genome.fa.s3676.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003676.1 Hibiscus syriacus cultivar Beakdansim tig00007856_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62930

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2271--2355	13	5.8	13	75	24	80	11	16	47	24	1.80
2271--2357	31	2.8	31	98	0	165	11	17	47	24	1.80
2264--2342	18	4.7	18	78	15	105	12	16	46	24	1.81
3131--3191	20	3.2	20	62	29	51	40	11	19	27	1.86
3119--3193	37	2.0	37	100	0	150	42	13	16	28	1.85
10214--10320	31	3.2	32	75	14	101	46	8	7	37	1.62
10207--10316	37	3.1	37	77	11	124	47	8	7	37	1.61
11715--11767	20	2.7	19	82	11	63	37	26	11	24	1.89
13478--13594	30	3.9	30	77	11	107	43	8	16	31	1.78
16220--16340	61	2.0	61	90	0	188	30	19	23	27	1.98
27214--27295	39	2.1	39	97	0	155	26	20	10	41	1.86
27374--27401	13	2.2	13	100	0	56	35	32	7	25	1.83
28807--28856	3	16.3	3	91	4	82	34	2	0	64	1.05
29244--29328	6	16.2	5	77	20	61	36	1	2	60	1.18
29245--29326	9	9.4	8	77	22	69	35	1	2	60	1.17
29259--29328	3	24.0	3	83	11	92	34	0	2	62	1.10
30460--30962	43	10.9	43	75	17	388	28	13	26	31	1.94
30500--30998	98	5.2	97	77	17	480	28	14	27	30	1.95
30451--30962	141	3.6	141	95	0	927	28	13	26	31	1.94
31012--31311	90	3.4	90	84	4	382	26	16	21	35	1.95
31454--31755	132	2.3	131	85	6	430	37	19	19	23	1.95
31992--32047	20	2.6	22	78	21	57	41	1	0	57	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31991--32095	6	19.6	5	77	17	56	37	0	1	60	1.15
31995--32095	9	12.4	8	73	23	70	36	0	1	60	1.15
32019--32097	3	27.0	3	83	10	101	34	0	2	63	1.08
32006--32098	23	4.0	23	82	12	84	36	1	2	60	1.16
38650--38817	64	2.6	64	81	6	169	35	20	18	26	1.95
39044--39101	25	2.3	25	79	8	64	36	12	10	41	1.76
39397--39461	23	2.8	23	83	2	85	21	29	24	24	1.99
44543--44676	67	2.0	67	89	1	207	29	19	13	38	1.90
44625--44711	37	2.4	37	86	0	111	28	19	12	39	1.88
44720--45267	138	4.0	138	85	1	670	27	27	17	26	1.98
44720--45267	277	2.0	277	83	2	699	27	27	17	26	1.98
45751--45789	2	19.5	2	94	0	69	46	0	2	51	1.14
49797--50029	29	8.3	29	84	9	279	36	3	19	41	1.67
49797--50029	27	8.4	27	84	7	263	36	3	19	41	1.67
49798--50029	83	2.8	83	86	5	308	36	3	19	41	1.67
57500--57733	27	8.4	28	82	7	260	35	2	20	41	1.67
57501--57733	83	2.8	83	86	3	299	35	3	19	41	1.67
58818--58863	23	2.0	23	91	0	74	28	26	23	21	1.99
58841--59293	149	3.0	149	96	0	843	35	20	15	28	1.93
59749--59907	63	2.5	63	86	2	203	27	21	19	32	1.97
59875--59912	19	2.0	20	94	5	69	26	28	15	28	1.96

Tables:   1

The End!