Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003678.1 Hibiscus syriacus cultivar Beakdansim tig00007858_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77782

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3515--3562
8
5.6
9
79
20
50
70
0
8
20
1.12
3610--3647
16
2.2
18
90
9
62
71
0
5
23
1.07
4106--4137
12
2.7
12
90
0
55
65
3
21
9
1.35
4927--4952
12
2.2
12
100
0
52
42
15
19
23
1.89
6411--6466
21
2.7
21
77
5
60
69
3
12
14
1.31
17010--17058
22
2.2
22
82
7
55
20
2
20
57
1.51
24215--24313
9
10.3
9
76
12
81
29
27
27
16
1.97
24217--24314
19
5.1
19
78
13
92
29
27
25
17
1.97
24240--24314
29
2.5
31
87
8
111
30
26
25
17
1.97
24257--24313
30
1.9
29
89
3
87
33
24
26
15
1.95
31470--31500
7
4.4
7
100
0
62
25
29
29
16
1.96
31497--31537
5
7.8
5
84
10
55
4
21
53
19
1.63
31534--31601
9
7.3
9
83
6
82
26
29
27
16
1.97
31536--31593
19
3.1
19
100
0
116
25
31
25
17
1.97
31534--31601
28
2.4
27
83
7
82
26
29
27
16
1.97
32912--33122
90
2.3
90
96
0
386
36
24
16
22
1.94
33964--34023
5
11.2
5
79
13
66
6
21
53
18
1.67
33957--34023
22
3.0
22
100
0
134
8
22
50
17
1.74
34015--34056
19
2.2
19
91
0
66
21
26
33
19
1.97
34023--34059
19
1.9
19
100
0
74
24
27
27
21
1.99
40326--40382
28
2.0
28
86
3
78
52
15
3
28
1.59
40477--40507
16
1.9
16
93
0
53
48
35
6
9
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41521--41572
28
1.9
28
88
7
81
57
11
3
26
1.51
42651--42712
26
2.4
27
75
8
65
38
1
0
59
1.07
43902--43953
27
2.0
27
88
3
79
32
19
13
34
1.90
44003--44215
36
5.9
35
85
8
277
18
22
20
38
1.93
44003--44215
108
2.0
108
87
3
313
18
22
20
38
1.93
44003--44220
72
3.0
72
92
2
350
18
22
19
39
1.92
51041--51111
26
2.7
26
97
0
133
33
8
29
28
1.86
58003--58051
21
2.3
21
80
10
55
8
12
8
71
1.31
69004--69105
45
2.2
46
85
1
134
34
16
18
30
1.93
71741--71837
44
2.2
44
83
10
119
27
20
24
26
1.99
77560--77736
63
2.8
65
81
6
202
28
16
24
30
1.96

Tables:   1

The End!