Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000368.1 Hibiscus syriacus cultivar Beakdansim tig00000669_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99581

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
450--501
15
3.4
15
83
2
59
38
11
15
34
1.83
958--1112
45
3.4
45
89
2
195
41
9
20
28
1.82
3718--3801
14
5.9
14
70
13
57
28
1
1
69
1.04
3980--4012
15
2.1
16
88
5
50
9
12
0
78
0.95
3942--4020
40
2.0
41
80
9
92
17
10
3
68
1.33
4029--4077
2
24.5
2
100
0
98
48
0
0
51
1.00
4089--4131
15
3.1
14
80
19
54
6
2
9
81
0.95
4099--4127
12
2.3
13
94
5
51
6
3
6
82
0.93
7229--7373
29
5.0
29
80
5
166
35
8
1
54
1.39
7222--7377
58
2.7
58
86
5
215
35
8
1
54
1.39
7222--7421
30
6.8
29
80
5
197
37
8
1
54
1.37
7464--7493
10
2.8
11
90
10
53
70
0
0
30
0.88
14209--14239
16
1.9
16
93
0
53
19
12
19
48
1.81
16798--16847
2
25.0
2
100
0
100
50
0
0
50
1.00
17839--17890
18
2.8
18
88
2
68
1
28
17
51
1.56
18286--18331
3
15.0
3
86
4
65
65
0
2
32
1.05
18446--19068
45
13.8
45
91
1
933
35
18
22
22
1.96
21128--21266
74
1.9
75
86
1
199
28
20
17
33
1.96
29337--29394
28
2.2
26
84
6
71
60
1
5
32
1.29
31636--31702
3
22.0
3
96
3
125
67
0
0
32
0.91
38540--38584
21
2.1
21
100
0
90
28
13
4
53
1.59
42833--42874
20
2.1
20
86
0
57
50
0
2
47
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46449--46492
3
14.0
3
81
9
52
34
2
2
61
1.21
46453--46489
19
1.9
19
94
0
65
32
2
2
62
1.23
50443--50482
18
2.3
18
86
4
55
32
17
25
25
1.97
50801--50850
26
2.0
26
84
7
68
26
8
6
60
1.48
51056--51123
23
3.0
23
82
0
91
29
19
25
26
1.98
55992--56107
3
38.7
3
94
3
207
34
0
0
64
1.00
59926--59951
11
2.4
11
100
0
52
23
0
53
23
1.46
60498--60533
19
1.9
19
94
5
65
69
0
0
30
0.89
60441--60636
110
1.8
106
87
4
293
46
8
8
37
1.63
60758--60813
28
2.1
28
83
6
71
69
3
0
26
1.04
62120--62186
3
22.3
3
80
6
55
61
0
1
37
1.05
62314--63066
44
16.7
46
86
8
978
34
17
20
26
1.95
62314--63066
179
4.2
183
86
7
974
34
17
20
26
1.95
63764--63811
19
2.4
19
89
6
69
37
16
6
39
1.74
63775--63813
19
2.1
19
100
0
78
38
15
10
35
1.81
65147--65319
75
2.3
75
82
0
202
30
21
16
31
1.95
65932--66161
113
2.0
114
99
0
453
26
19
20
33
1.96
67548--67609
32
1.9
32
96
0
115
19
19
17
43
1.88
68065--68105
20
2.2
20
86
8
59
2
19
0
78
0.87
68038--68274
115
2.0
115
93
4
402
16
18
10
54
1.70
68186--68224
8
4.9
8
90
9
62
0
20
0
79
0.73
68193--68223
9
3.6
9
91
8
55
0
19
0
80
0.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68186--68223
17
2.3
16
95
4
67
0
18
0
81
0.69
72556--72613
26
2.2
25
80
14
64
62
1
3
32
1.22
73175--73210
19
1.9
19
94
5
65
69
0
0
30
0.89
73118--73312
109
1.8
105
89
8
304
44
8
9
36
1.68
73425--73480
25
2.2
26
84
9
71
67
3
0
28
1.07
74747--74826
3
27.3
3
76
9
76
61
0
2
36
1.10
74753--74805
20
2.7
20
87
0
88
58
0
1
39
1.09
82090--82264
89
2.0
90
90
3
282
42
5
10
41
1.62
83826--83878
23
2.4
22
75
9
54
37
30
0
32
1.58
85120--85154
2
17.5
2
100
0
70
51
0
0
48
1.00
86304--86344
20
2.0
20
86
9
57
29
21
19
29
1.98
87384--87501
32
3.7
32
71
6
105
33
18
13
33
1.90
93068--93140
32
2.3
32
80
0
83
36
23
10
28
1.89
94665--95044
189
2.0
190
93
2
658
33
16
17
32
1.92

Tables:   1

The End!