genome.fa.s3680.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003680.1 Hibiscus syriacus cultivar Beakdansim tig00007860_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106805

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3083--3142	29	2.1	28	81	9	68	51	0	1	46	1.10
9640--9669	15	2.0	15	93	0	51	26	16	13	43	1.85
18647--18728	34	2.4	34	100	0	164	28	23	15	32	1.95
42486--42519	12	2.8	12	90	0	50	41	5	5	47	1.52
43958--43987	15	2.0	15	93	0	51	26	16	13	43	1.85
44470--44551	17	4.7	17	75	8	76	21	20	18	39	1.93
44542--44580	18	2.2	17	90	4	60	15	15	12	56	1.68
44730--44779	26	1.9	26	83	0	64	58	0	2	40	1.10
46094--46148	27	2.0	27	100	0	110	43	14	7	34	1.73
50028--50155	28	4.6	27	78	8	94	34	9	12	43	1.75
50027--50155	56	2.3	57	80	1	143	34	10	12	43	1.76
50298--50391	28	3.4	28	71	10	68	40	9	12	37	1.76
50446--50501	29	2.0	29	85	3	78	32	12	14	41	1.83
50510--50563	27	2.0	27	85	3	72	37	11	16	35	1.84
50884--51159	117	2.4	114	79	6	297	37	13	11	38	1.80
51094--51196	29	3.6	29	73	12	86	37	9	11	40	1.75
50976--51281	143	2.1	143	86	3	420	37	12	12	38	1.80
51236--51492	28	9.2	28	71	8	125	32	11	11	43	1.77
51259--51386	56	2.3	56	79	2	141	35	11	9	43	1.73
51630--51687	20	2.8	21	89	7	91	29	17	1	51	1.55
53508--53751	36	6.8	36	91	0	362	31	23	27	17	1.97
63475--63588	43	2.7	43	75	5	113	46	11	24	17	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64408--64450	10	4.3	10	80	11	52	34	27	0	37	1.57
64484--64517	17	1.9	18	88	5	52	29	0	5	64	1.17
64513--64572	13	4.8	13	72	15	63	28	1	3	66	1.17
64490--64569	21	4.0	21	68	18	62	30	1	5	63	1.23
67297--67352	28	2.0	28	100	0	112	28	10	32	28	1.90
68630--69160	263	2.0	265	99	0	1048	33	17	20	29	1.95
70378--70734	91	3.9	91	90	0	561	24	22	16	37	1.93
76236--76284	23	2.1	23	81	7	55	75	4	0	20	0.96
86440--86718	42	6.6	42	81	8	280	25	20	5	48	1.71
86440--86710	85	3.2	81	81	9	294	25	21	5	47	1.72
86440--86718	127	2.2	127	81	6	334	25	20	5	48	1.71
87910--88051	75	1.9	75	86	0	203	39	14	21	25	1.90
88134--88228	32	3.0	32	80	0	109	30	25	13	30	1.94
94020--94113	32	2.9	32	82	0	107	25	19	14	40	1.90
100374--100412	20	2.0	20	100	0	78	23	10	30	35	1.88
100376--100421	20	2.3	20	88	7	67	23	10	26	39	1.88
103155--103217	31	2.0	32	96	3	119	49	15	9	25	1.75
104330--104362	2	17.5	2	87	12	52	51	0	0	48	1.00

Tables:   1

The End!