genome.fa.s3681.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003681.1 Hibiscus syriacus cultivar Beakdansim tig00007862_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121594

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325--353	2	14.5	2	100	0	58	0	48	0	51	1.00
353--383	2	15.5	2	100	0	62	48	0	0	51	1.00
7764--7789	13	2.0	13	100	0	52	53	15	0	30	1.42
10703--10731	2	14.5	2	100	0	58	51	0	0	48	1.00
12613--12661	19	2.5	20	86	6	64	26	0	0	73	0.83
12613--12661	20	2.5	20	87	12	66	26	0	0	73	0.83
13710--13750	19	2.3	18	88	12	66	34	0	7	58	1.26
16541--16575	17	2.0	17	88	5	52	74	0	0	25	0.82
16541--16606	28	2.3	29	84	5	91	69	1	0	28	0.97
16604--16884	36	7.4	38	84	7	308	40	8	4	46	1.54
16591--16884	39	7.8	38	84	8	336	42	8	4	44	1.54
16591--16947	38	9.4	38	80	10	290	42	8	4	44	1.55
25000--25038	3	13.0	3	84	10	53	69	2	0	28	1.02
26301--26334	18	1.9	17	88	5	50	73	2	0	23	0.97
26301--26366	28	2.3	29	84	5	91	68	4	0	27	1.09
26376--26664	38	7.6	36	79	8	227	41	7	5	45	1.56
26352--26664	77	4.1	75	75	13	257	41	7	5	45	1.57
28007--28073	31	2.2	31	89	5	100	31	1	4	62	1.24
28870--28911	19	2.2	19	95	0	75	16	26	35	21	1.94
29449--29590	50	2.8	50	86	2	185	19	17	10	52	1.74
29701--29732	2	16.0	2	100	0	64	50	0	0	50	1.00
30821--30992	20	8.5	20	74	10	107	38	24	18	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30882--30994	20	5.6	20	82	3	136	38	23	19	18	1.93
30839--31010	61	2.8	60	75	9	177	37	24	18	19	1.94
30882--30992	41	2.7	41	90	1	170	37	24	18	18	1.94
31852--31905	24	2.2	24	93	0	90	20	18	20	40	1.91
34326--34492	33	4.8	33	77	9	172	44	17	21	15	1.86
34334--34496	19	9.3	19	68	20	95	45	18	22	14	1.85
34492--34537	19	2.4	20	89	7	69	13	10	26	50	1.74
36068--36134	21	3.2	21	68	4	55	19	20	35	23	1.95
36068--36190	42	2.9	41	81	9	115	24	17	34	22	1.96
36587--36705	19	6.7	19	70	20	96	45	21	21	12	1.84
36611--36704	33	2.8	33	96	0	170	44	21	22	11	1.84
36713--36750	19	2.0	19	94	0	67	5	13	31	50	1.63
36867--37152	94	3.1	93	94	1	491	48	18	12	21	1.80
37002--37034	17	1.9	17	88	11	50	45	12	18	24	1.83
38856--38963	33	2.9	39	80	10	102	45	19	23	12	1.83
38856--38968	19	6.1	19	76	13	101	44	19	23	12	1.85
38980--39036	14	3.7	14	72	20	51	10	22	22	43	1.84
38964--39044	33	2.5	33	93	0	135	9	20	22	46	1.80
39028--39099	20	3.5	20	84	5	92	12	16	19	51	1.76
39656--39848	20	9.5	20	71	15	130	18	17	24	39	1.92
39657--39848	40	4.7	41	87	1	271	18	17	24	39	1.92
39857--39930	20	3.7	20	96	1	130	10	17	24	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39897--40017	21	5.8	21	76	7	102	20	21	19	38	1.94
39855--40016	42	3.9	41	72	10	132	19	19	20	40	1.91
39980--40054	20	3.7	20	75	8	71	17	20	28	34	1.95
45300--45329	15	2.0	15	93	0	51	50	3	0	46	1.18
47880--47921	20	2.1	20	91	8	68	28	47	21	2	1.63
51124--51212	19	4.7	19	77	0	79	47	13	22	16	1.82
61129--61204	16	4.7	15	78	14	62	76	0	7	15	1.01
61137--61208	26	2.8	26	81	8	76	76	0	6	16	0.99
61157--61204	10	4.6	10	80	10	60	77	0	6	16	0.97
61147--61209	22	2.8	22	81	11	74	76	0	6	17	0.99
62853--62901	21	2.3	21	79	6	55	61	0	2	36	1.08
62851--62906	23	2.4	23	82	8	60	57	0	5	37	1.22
63708--63749	12	3.4	12	78	15	50	42	7	0	50	1.30
64734--64879	64	2.3	64	83	3	168	28	27	27	17	1.97
64734--64879	32	4.5	32	78	4	150	28	27	27	17	1.97
65957--66020	27	2.3	28	86	2	85	20	7	25	46	1.77
72336--72397	32	1.9	32	83	6	81	38	20	12	27	1.90
74407--74457	20	2.5	21	87	9	79	27	15	23	33	1.95
77018--77088	31	2.3	31	95	0	124	28	14	32	25	1.94
82616--82649	14	2.5	14	90	4	52	58	0	0	41	0.98
82610--82647	17	2.2	18	95	4	69	57	0	0	42	0.98
103943--103980	19	2.1	19	85	5	51	21	2	5	71	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105963--106016	17	2.8	21	67	21	53	57	0	0	42	0.98
106197--106254	30	2.0	29	80	12	66	70	6	8	13	1.32
109186--109686	55	9.1	55	83	5	539	28	23	18	29	1.98
109186--109686	110	4.6	109	85	3	608	28	23	18	29	1.98
109186--109686	165	3.0	165	85	4	609	28	23	18	29	1.98
113028--113253	59	3.8	59	81	5	269	38	10	21	30	1.87
113028--113347	118	2.7	118	79	4	299	38	11	20	29	1.87
113028--113300	59	4.6	59	79	6	266	38	9	21	30	1.86
113276--113388	59	1.9	59	82	7	140	35	12	20	31	1.90
115847--116195	186	1.9	186	93	0	599	45	9	4	40	1.56
116166--116222	19	2.9	20	78	5	62	45	1	0	52	1.11

Tables:   1

The End!