genome.fa.s3682.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003682.1 Hibiscus syriacus cultivar Beakdansim tig00007863_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73365

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1337--1372	2	18.0	2	88	0	54	44	2	0	52	1.15
3084--3182	43	2.3	44	81	10	123	25	22	4	48	1.68
17697--17998	81	3.7	81	86	2	392	28	25	11	34	1.91
17697--17988	162	1.8	162	87	1	433	29	25	11	34	1.91
17961--18333	68	5.5	68	87	1	516	29	23	15	31	1.95
17961--18333	135	2.7	135	86	0	512	29	23	15	31	1.95
17948--18331	203	1.9	204	86	1	556	29	23	14	32	1.94
18548--18748	55	3.7	55	83	0	242	32	17	12	36	1.88
18556--18754	110	1.8	111	86	4	296	31	16	13	38	1.88
19059--19109	22	2.5	21	84	9	61	29	19	17	33	1.95
22444--22533	40	2.2	41	83	9	123	48	0	0	51	1.00
22550--22585	12	3.0	12	91	0	54	11	16	50	22	1.77
23699--24073	81	4.6	81	84	2	403	29	22	11	36	1.89
23737--24073	81	4.2	81	84	2	408	30	22	11	36	1.89
24031--24489	68	6.8	68	86	1	609	30	23	14	31	1.94
24700--24907	55	3.8	55	89	3	303	32	19	12	35	1.89
25263--25315	22	2.6	21	85	8	65	32	16	15	35	1.90
28894--28918	12	2.1	12	100	0	50	16	16	16	52	1.76
30506--30582	2	38.0	2	77	12	50	50	6	3	38	1.47
30557--30584	10	2.8	10	100	0	56	60	0	0	39	0.97
31147--31174	2	14.0	2	100	0	56	50	0	0	50	1.00
33349--33406	8	7.5	8	71	21	52	15	43	24	17	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33357--33393	18	2.1	18	100	0	74	16	48	24	10	1.77
33344--33380	13	2.8	13	100	0	74	16	48	24	10	1.77
36269--36359	47	1.9	48	88	2	139	25	16	19	38	1.92
36269--36359	24	3.8	24	86	2	130	25	16	19	38	1.92
38555--38622	13	5.5	13	80	19	67	16	48	23	11	1.79
38551--38628	18	4.2	18	95	5	129	16	48	21	12	1.80
38596--38657	8	8.5	8	83	16	82	14	37	25	22	1.92
38612--38658	7	6.4	7	92	7	76	12	34	27	25	1.92
38612--38658	15	3.2	15	96	3	87	12	34	27	25	1.92
41136--41217	24	3.5	24	86	3	121	25	18	20	35	1.95
43407--43478	18	4.3	18	76	16	91	16	48	20	13	1.80
43411--43478	31	2.2	31	91	0	118	16	47	22	14	1.82
43429--43465	13	2.8	13	87	0	56	16	45	21	16	1.84
43447--43504	26	2.1	28	81	6	66	17	37	25	18	1.93
45956--46046	24	3.8	24	82	2	112	25	17	18	38	1.92
54450--54489	21	1.9	21	89	0	62	10	25	40	25	1.86
54471--54532	20	2.9	21	78	9	63	17	25	33	22	1.96
64505--64555	22	2.3	22	93	0	84	17	25	27	29	1.98
68882--68952	19	3.5	21	79	12	85	33	15	25	25	1.95
68875--69047	95	1.8	94	85	9	244	35	12	24	26	1.92
69377--69796	54	7.8	54	83	1	491	29	16	20	33	1.95
69373--69795	162	2.6	162	85	0	569	29	16	20	33	1.95

Tables:   1

The End!