genome.fa.s3683.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003683.1 Hibiscus syriacus cultivar Beakdansim tig00007867_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143997

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4013--4216	44	4.5	44	96	2	363	27	33	8	30	1.87
9849--9925	2	38.5	2	94	0	136	49	2	0	48	1.15
17704--17741	18	2.1	18	100	0	76	26	21	18	34	1.96
18733--19215	240	2.0	240	94	0	849	42	15	12	29	1.83
19293--19339	24	2.0	24	91	8	78	61	4	2	31	1.27
21532--21708	44	4.0	44	84	4	223	44	11	20	23	1.84
26055--26145	3	30.0	3	80	14	89	38	2	1	58	1.18
27977--28015	15	2.6	15	91	0	69	51	12	23	12	1.74
33411--33460	22	2.4	20	83	6	55	50	2	4	44	1.32
47570--47630	24	2.6	24	94	2	106	11	9	36	42	1.74
47695--47720	3	8.7	3	100	0	52	65	0	0	34	0.93
48967--49063	32	3.0	32	75	3	106	40	11	7	41	1.69
53072--53096	2	12.5	2	100	0	50	52	0	0	48	1.00
53227--53357	60	2.2	60	80	4	147	32	15	12	40	1.84
54551--54621	20	3.5	21	79	9	67	30	15	25	28	1.96
58811--58864	24	2.3	23	81	6	65	44	1	5	48	1.37
58811--58866	23	2.5	23	78	18	64	46	1	5	46	1.36
59389--59435	24	1.9	24	87	12	69	57	2	6	34	1.36
59590--59644	16	3.5	16	75	5	58	16	16	20	47	1.83
60521--60649	68	1.9	68	82	6	163	41	10	14	34	1.80
61150--61208	2	29.5	2	100	0	118	49	0	0	50	1.00
64505--64732	102	2.2	101	78	7	239	34	21	17	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65381--65472	29	3.2	29	93	0	148	16	32	32	18	1.93
65539--65576	20	1.9	20	88	0	58	18	10	50	21	1.76
65526--65631	50	2.1	51	94	1	187	16	10	50	22	1.76
65694--65776	43	2.0	40	84	11	105	19	22	27	30	1.98
66146--66189	21	2.1	21	91	0	70	29	0	15	54	1.42
66166--66228	28	2.2	30	91	5	103	31	0	11	57	1.34
66729--66773	21	2.2	21	84	4	56	35	0	8	55	1.31
67032--67090	26	2.3	25	75	18	66	47	8	3	40	1.51
69385--69507	40	3.0	41	73	15	112	47	12	0	40	1.41
69399--69535	41	3.3	39	75	13	89	48	11	0	39	1.45
69910--70069	29	5.6	29	94	1	261	24	30	30	15	1.95
70164--70210	21	2.2	21	100	0	94	14	29	25	29	1.95
70211--70270	29	2.1	29	96	0	111	18	28	28	25	1.98
71822--71893	19	3.8	18	70	17	56	56	2	1	38	1.22
72417--72484	15	4.5	15	71	15	59	32	0	2	64	1.08
75990--76051	32	1.9	33	83	9	83	45	6	9	38	1.63
78709--78961	68	3.7	68	90	1	364	31	15	22	29	1.95
78911--79150	81	3.0	81	88	3	335	37	12	22	27	1.91
79203--79234	2	16.0	2	100	0	64	50	0	0	50	1.00
82910--82958	21	2.3	21	100	0	98	36	26	12	24	1.91
83028--83250	95	2.3	94	81	6	236	30	16	26	26	1.96
83193--83250	21	2.7	21	80	12	64	29	15	27	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83561--83733	58	3.0	58	88	9	262	34	12	18	34	1.89
84082--84276	68	2.9	67	92	2	322	30	14	25	29	1.95
86338--86410	29	2.5	29	79	16	80	36	2	19	41	1.66
88611--88946	168	2.0	168	97	2	640	27	16	16	39	1.90
89341--89428	3	30.7	3	86	8	94	40	1	0	57	1.06
89340--89436	11	8.5	11	73	15	81	42	1	0	56	1.06
91322--91454	66	2.0	66	100	0	266	29	25	13	31	1.94
94959--94990	15	2.2	15	94	5	57	46	6	3	43	1.44
102250--102314	9	7.1	9	73	3	58	78	1	16	3	0.96
102251--102314	18	3.5	19	76	6	69	78	1	17	3	0.96
102252--102314	17	3.5	18	75	14	58	77	1	17	3	0.97
103451--103764	84	3.7	84	91	1	495	27	13	21	37	1.91
104381--104920	113	4.8	113	91	1	834	37	13	18	29	1.89
105224--105318	3	31.7	3	95	0	172	34	1	0	64	1.01
108958--108987	14	2.1	14	93	0	51	23	10	36	30	1.87
110947--111001	21	2.6	21	79	0	65	30	5	29	34	1.80
111037--111095	20	3.0	20	82	0	82	27	22	22	28	1.99
118813--118861	26	1.9	26	84	12	66	28	0	4	67	1.09
118839--118891	25	2.0	26	85	7	72	32	1	1	64	1.15
118851--118893	16	2.7	16	85	7	52	30	2	2	65	1.18
124346--124395	24	2.1	24	88	0	73	44	2	6	48	1.39
126392--126437	15	3.3	13	80	16	56	60	2	4	32	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126392--126438	14	3.3	14	79	5	58	61	2	4	31	1.27
137222--137355	68	2.0	68	93	0	232	29	32	15	23	1.95
143412--143508	43	2.2	42	85	8	124	55	3	14	26	1.54

Tables:   1

The End!