Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003684.1 Hibiscus syriacus cultivar Beakdansim tig00007870_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88721

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5358--5487
64
2.0
65
86
7
185
30
21
18
29
1.97
11203--11282
23
3.6
23
77
6
101
26
22
22
28
1.99
13245--13271
2
13.5
2
100
0
54
48
0
0
51
1.00
20547--20586
16
2.5
16
84
8
55
27
30
7
35
1.84
20716--20793
16
5.0
16
73
19
51
21
8
7
61
1.51
23389--23413
8
3.1
8
100
0
50
36
12
0
52
1.39
25749--25810
24
2.5
25
80
10
74
33
6
1
58
1.34
32354--32631
101
2.7
101
78
6
283
33
16
11
38
1.85
32267--32579
167
1.9
166
80
5
371
33
16
12
37
1.86
34436--34502
28
2.4
27
85
5
71
29
13
5
50
1.65
34732--34774
16
2.7
16
88
0
68
30
32
6
30
1.84
38503--38581
31
2.5
31
85
6
97
50
13
7
27
1.69
38634--38684
20
2.6
20
85
11
70
50
1
0
47
1.12
39234--39273
3
13.3
3
100
0
80
35
0
0
65
0.93
39779--39831
17
2.9
18
88
8
72
28
0
52
18
1.46
40757--40801
18
2.5
18
92
0
72
33
6
13
46
1.69
43165--43192
12
2.3
12
100
0
56
46
17
21
14
1.84
44514--44558
18
2.5
18
85
0
63
33
8
13
44
1.75
46753--46802
10
5.1
10
76
13
59
20
22
28
30
1.98
46753--46804
19
2.7
20
90
3
79
19
25
26
28
1.98
46799--46855
17
3.4
17
97
0
105
17
43
22
15
1.87
46845--46887
7
6.4
7
89
10
72
16
30
30
23
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46845--46883
13
3.0
13
100
0
78
15
30
30
23
1.95
46845--46887
20
2.2
20
91
8
70
16
30
30
23
1.96
47759--47833
31
2.4
30
82
4
96
14
24
32
29
1.95
47759--47881
62
2.0
63
82
7
153
17
26
29
26
1.97
54062--54170
19
5.7
19
88
5
130
19
23
28
28
1.98
54164--54221
17
3.4
17
97
0
107
17
43
24
15
1.87
54211--54240
7
4.4
7
91
8
53
16
30
30
23
1.96
54211--54236
13
2.0
13
100
0
52
15
30
30
23
1.95
55105--55225
31
3.9
31
72
10
97
17
26
28
27
1.97
55105--55227
62
2.0
63
82
7
153
17
26
29
27
1.97
56286--56317
16
2.1
15
94
5
55
18
15
6
59
1.57
58697--58730
17
2.0
17
100
0
68
35
17
5
41
1.74
60475--60548
38
1.9
39
86
8
107
28
22
13
35
1.92
60777--60951
65
2.6
66
87
6
248
26
19
16
37
1.92
60955--61493
136
4.0
136
83
2
629
26
30
16
25
1.97
61679--61727
3
16.3
3
91
8
82
34
2
0
63
1.06
70578--70789
103
2.1
103
95
0
379
30
21
14
33
1.93
71656--71711
18
3.1
18
80
12
69
23
17
10
48
1.79
73734--73805
36
2.0
36
91
0
117
29
25
20
25
1.99
75730--75766
19
1.9
19
94
0
65
24
24
10
40
1.87
87027--87070
21
2.1
21
88
12
65
54
11
13
20
1.69
86097--87657
182
8.7
181
85
5
1961
43
13
15
27
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88077--88143
19
3.6
19
93
2
109
46
0
17
35
1.49

Tables:   1

The End!