genome.fa.s3688.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003688.1 Hibiscus syriacus cultivar Beakdansim tig00007877_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61386

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8598--8692	18	4.9	18	77	12	100	31	31	16	20	1.95
8597--8692	38	2.5	37	83	6	111	31	31	16	20	1.95
9441--9485	19	2.4	19	96	0	81	24	35	13	26	1.92
9509--9551	21	2.0	21	90	0	68	27	18	20	32	1.96
15600--15692	18	4.8	18	72	12	60	27	27	21	22	1.99
24013--24051	17	2.3	17	86	0	60	58	0	0	41	0.98
24312--24343	2	17.0	2	87	12	50	46	0	0	53	1.00
24350--24413	3	22.3	3	80	15	55	73	0	1	25	0.92
24350--24413	14	5.1	14	73	24	70	73	0	1	25	0.92
25665--25709	3	15.0	3	92	0	72	62	2	0	35	1.08
25884--26661	76	10.4	76	93	1	1130	32	20	21	25	1.97
25884--26661	229	3.4	225	90	3	1120	32	20	21	25	1.97
26602--26958	185	1.9	186	95	1	644	38	15	14	31	1.87
27526--27584	22	2.7	22	91	0	100	40	15	11	32	1.83
31529--31808	73	3.8	73	80	7	280	48	11	11	28	1.73
31531--31808	146	1.9	148	82	10	354	48	11	11	28	1.73
33048--33143	24	3.8	26	75	8	83	16	17	41	23	1.89
33356--33385	15	1.9	16	93	6	53	63	0	0	36	0.95
46578--46672	18	4.9	18	77	12	100	31	31	16	20	1.95
46577--46672	38	2.5	37	83	6	111	31	31	16	20	1.95
47419--47463	19	2.4	19	96	0	81	24	35	13	26	1.92
47487--47529	21	2.0	21	90	0	68	27	18	20	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53606--53640	18	1.9	18	88	0	52	25	28	22	22	1.99
53857--53914	24	2.5	21	75	25	55	32	22	5	39	1.76
58444--58474	10	3.1	10	100	0	62	19	9	19	51	1.74

Tables:   1

The End!