genome.fa.s3689.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003689.1 Hibiscus syriacus cultivar Beakdansim tig00007879_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68942

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
716--1661	182	5.2	180	89	4	1331	43	12	15	28	1.84
716--1661	360	2.6	362	88	4	1396	43	12	15	28	1.84
1589--1634	20	2.3	19	75	10	56	50	15	19	15	1.79
4817--4978	87	1.9	88	89	2	256	30	14	11	43	1.81
7776--7834	29	2.0	29	100	0	118	23	13	13	49	1.78
12430--12493	29	2.2	29	91	2	103	31	12	12	43	1.80
12437--12495	29	2.0	29	96	0	109	25	13	13	47	1.79
13625--13686	32	1.9	32	83	0	79	40	6	9	43	1.63
15180--15289	53	2.0	55	94	3	197	40	0	3	54	1.24
15272--15306	17	2.0	18	88	5	54	42	0	2	54	1.15
16093--16250	79	2.0	79	83	2	201	42	13	16	27	1.86
21941--21980	18	2.2	18	91	8	64	0	32	22	45	1.53
23522--23582	23	2.7	23	87	2	88	19	26	31	22	1.98
25469--25538	34	2.1	34	86	5	99	21	30	15	32	1.94
25887--25950	21	3.0	21	90	0	101	15	23	40	20	1.90
27343--27390	19	2.5	20	82	3	62	29	12	6	52	1.63
32828--32971	72	2.0	72	100	0	288	43	15	11	30	1.81
33339--33419	41	2.0	42	82	2	101	29	18	19	32	1.96
33376--33607	83	2.8	83	77	5	227	31	12	18	37	1.88
37290--37376	43	2.0	43	82	4	104	31	21	17	29	1.96
38399--38462	27	2.3	28	94	2	112	39	6	12	42	1.68
38412--38470	28	2.2	27	87	6	84	42	11	10	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38923--38968	19	2.4	19	85	3	56	30	6	13	50	1.66
38934--38970	19	1.9	19	94	0	65	32	2	10	54	1.49
39775--39841	33	2.0	34	85	2	91	67	2	5	23	1.27
40054--40098	20	2.3	19	81	7	54	51	2	4	42	1.34
40923--41946	182	5.6	181	85	4	1360	44	12	15	27	1.83
40923--41946	364	2.8	363	90	1	1550	44	12	15	27	1.83
42378--42439	19	3.3	19	97	0	115	50	1	14	33	1.53
43702--43757	24	2.5	22	77	13	60	41	1	5	51	1.35
45927--45977	19	2.7	19	90	0	75	33	1	7	56	1.39
46766--47129	177	2.1	177	94	1	640	41	15	14	27	1.87
47123--47147	12	2.1	12	100	0	50	24	16	16	44	1.86
46360--47745	586	2.3	596	88	5	2073	41	15	14	27	1.86
46348--47835	199	7.5	198	87	5	1942	41	15	14	28	1.87
48183--48240	15	3.7	15	83	6	71	22	50	1	25	1.59
49388--49425	12	3.2	12	92	0	58	39	2	31	26	1.70
50775--50827	24	2.2	24	89	0	79	37	1	13	47	1.54
51000--52586	200	7.9	200	90	1	2060	40	16	14	28	1.87
51000--52797	200	9.0	200	88	3	1075	40	16	14	28	1.87
58609--58671	23	3.0	20	71	15	63	52	15	4	26	1.63
58766--58819	29	1.9	27	92	3	81	53	11	12	22	1.70
59172--59219	24	2.0	24	91	0	78	33	6	27	33	1.82

Tables:   1

The End!