genome.fa.s369.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000369.1 Hibiscus syriacus cultivar Beakdansim tig00000670_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  189133

Tables:   1   

This is table  1  of  1  ( 107 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2--74	22	3.7	20	71	25	73	34	13	13	38	1.85
17--50	17	2.0	17	88	0	50	29	17	5	47	1.71
741--1363	74	8.4	74	93	2	988	25	21	21	31	1.98
1493--1547	3	18.7	3	88	3	85	36	0	0	63	0.95
2030--2058	10	2.9	10	100	0	58	72	0	27	0	0.85
4358--4423	30	2.2	30	94	2	116	39	15	30	15	1.88
12814--12882	36	1.9	36	84	0	93	33	5	26	34	1.80
18394--18899	93	5.5	93	83	5	584	32	17	24	25	1.97
18707--18873	84	2.0	84	86	2	237	33	16	24	25	1.96
18921--19102	93	2.0	93	87	4	269	32	17	25	24	1.97
31750--31830	39	2.1	39	100	0	162	56	14	2	25	1.51
35565--35604	21	1.9	21	89	0	62	42	0	0	57	0.98
39474--39550	38	2.0	38	89	0	118	25	28	23	22	1.99
39475--39547	18	3.9	18	80	7	92	26	30	23	20	1.99
40143--40245	44	2.3	45	85	5	129	29	16	18	35	1.93
40231--40278	19	2.5	19	93	0	78	25	25	18	31	1.98
41222--41246	13	1.9	13	100	0	50	72	0	0	28	0.86
47686--47984	81	3.7	81	90	2	420	27	21	12	38	1.89
47686--47984	162	1.8	163	89	0	465	27	21	12	38	1.89
48214--48421	74	2.8	75	83	2	247	24	30	23	21	1.99
54220--54259	21	1.9	21	89	0	62	25	40	25	10	1.86
56856--57062	74	2.7	75	82	3	236	24	30	23	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57782--58063	68	4.1	68	91	0	429	31	23	14	30	1.94
58279--58493	58	3.8	59	87	7	286	36	18	11	33	1.87
59975--60098	55	2.3	55	95	0	230	25	20	18	36	1.95
60107--60159	21	2.5	21	96	0	97	35	11	18	33	1.87
61174--61216	17	2.5	17	96	0	77	34	16	23	25	1.95
65278--65326	24	2.0	24	84	11	64	44	2	6	46	1.39
66858--66898	21	1.9	22	90	5	66	26	19	17	36	1.94
73220--73593	170	2.2	168	82	4	437	35	17	16	30	1.92
75139--75188	24	2.2	22	79	10	57	40	28	0	32	1.57
75147--75196	24	2.1	24	85	7	66	48	28	0	24	1.52
76586--76626	17	2.4	17	100	0	82	19	24	21	34	1.97
80258--80302	23	2.0	23	86	0	63	26	26	26	20	1.99
82126--82170	21	2.1	21	84	8	56	17	22	28	31	1.97
85439--85483	23	2.0	23	86	0	63	26	26	26	20	1.99
87302--87346	21	2.1	21	84	8	56	17	22	28	31	1.97
88642--88703	2	31.0	2	96	0	115	48	0	1	50	1.10
92667--92728	21	2.7	23	78	9	56	54	16	16	12	1.71
93201--93501	20	14.9	20	76	15	205	39	23	20	16	1.92
93282--93479	62	3.2	61	83	6	188	36	24	21	17	1.95
93278--93513	40	5.8	40	89	4	321	37	24	21	16	1.93
93282--93513	20	11.4	20	81	9	229	37	24	21	17	1.94
93575--93649	6	12.5	6	100	0	150	33	50	16	0	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94404--94502	6	16.5	6	100	0	198	0	16	50	33	1.45
94613--94722	20	5.4	20	76	10	116	16	21	25	36	1.94
94613--94726	40	2.8	40	93	2	192	15	21	24	37	1.93
94626--94784	20	7.9	19	73	13	115	16	21	21	40	1.91
102074--102113	17	2.3	19	79	16	50	67	22	5	5	1.30
112957--113000	22	2.1	22	87	8	65	40	0	0	59	0.98
112963--113009	20	2.4	20	75	3	51	36	2	0	61	1.08
113149--113234	36	2.3	35	82	9	100	45	1	1	52	1.16
113342--113377	17	2.1	17	100	0	72	44	0	5	50	1.25
116791--116836	12	3.6	12	81	16	56	45	17	19	17	1.85
116797--116837	12	3.1	13	80	19	57	46	14	17	21	1.84
119129--119168	21	1.9	21	94	0	71	30	15	7	47	1.72
119163--119261	33	3.0	33	94	1	164	32	7	15	45	1.73
119247--119301	13	4.2	13	75	13	58	34	3	12	49	1.59
119697--119752	15	3.6	15	79	9	67	32	12	12	42	1.80
119716--119749	18	1.9	18	94	5	61	38	11	11	38	1.79
119843--119874	16	2.0	17	88	11	50	43	21	21	12	1.86
120171--120203	17	1.9	17	100	0	66	33	6	12	48	1.65
120298--120338	22	1.9	21	85	5	55	24	24	19	31	1.98
120650--120676	2	13.5	2	100	0	54	51	0	0	48	1.00
125862--125903	21	2.0	22	90	4	68	52	0	9	38	1.34
129725--129752	14	2.0	14	100	0	56	7	42	0	50	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142173--142275	36	2.9	36	88	0	161	41	14	16	27	1.87
150746--150844	36	2.8	36	93	0	162	44	18	14	23	1.86
155070--155208	36	3.9	36	96	0	242	43	14	16	25	1.86
157603--157730	31	4.1	31	90	4	132	32	15	5	46	1.69
157629--157730	31	3.3	31	97	0	186	31	16	4	47	1.68
161056--161102	21	2.2	21	80	0	58	34	19	21	25	1.96
161147--161183	19	1.9	19	94	0	65	21	16	29	32	1.95
164247--164581	36	9.5	36	73	17	187	46	2	3	46	1.35
164285--164407	64	1.9	65	88	1	185	46	1	4	47	1.33
164334--164496	77	2.1	76	86	4	220	47	1	4	46	1.33
164334--164503	40	4.4	39	77	8	163	47	2	4	46	1.34
164472--164564	12	7.3	12	69	15	62	50	2	2	45	1.25
164467--164535	29	2.3	30	82	2	86	50	2	2	43	1.32
164334--164527	77	2.5	79	81	8	186	47	2	4	45	1.35
164447--164567	66	1.9	63	85	8	165	52	3	2	42	1.31
165900--166011	4	27.0	4	74	10	66	22	3	0	73	1.04
165900--166011	16	6.8	16	72	11	82	22	3	0	73	1.04
165945--165999	21	2.6	21	81	16	60	16	5	1	76	1.06
165968--166011	17	2.7	16	89	10	63	22	2	0	75	0.92
169703--170029	110	3.0	109	86	2	444	35	23	18	23	1.96
170127--170511	84	4.6	83	85	4	533	30	26	18	23	1.98
170155--170510	165	2.1	164	86	4	489	31	25	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172309--172374	24	2.8	24	76	2	80	22	24	24	28	1.99
173406--174222	84	9.9	82	79	7	750	30	24	19	25	1.98
173447--174221	165	4.7	165	84	4	897	30	24	19	25	1.98
174869--175126	70	3.6	70	76	15	226	43	5	6	44	1.53
174850--175126	108	2.6	105	78	13	280	44	5	7	43	1.55
175088--175155	29	2.3	29	87	0	100	50	4	2	42	1.37
174868--175201	36	9.5	35	74	16	232	44	4	5	44	1.47
175216--175301	21	4.2	20	70	25	63	27	2	1	68	1.09
176504--176660	15	10.6	14	70	20	81	19	5	1	74	1.07
176504--176606	4	24.5	4	79	13	52	19	4	0	74	1.05
176527--176564	10	3.9	10	89	6	60	34	0	0	65	0.93
176556--176638	16	5.2	16	72	21	59	13	7	2	77	1.08
176556--176638	17	5.2	15	78	18	64	13	7	2	77	1.08
176551--176616	20	3.2	20	75	14	55	16	7	1	74	1.12
177194--177228	17	2.1	18	89	10	56	28	0	5	65	1.15
177299--177476	51	3.6	48	81	7	194	26	14	14	43	1.84
177299--177476	52	3.5	50	81	6	191	26	14	14	43	1.84
181283--181332	12	4.1	12	76	21	50	14	8	10	68	1.40
187753--187777	12	2.1	12	100	0	50	32	16	20	32	1.94

Tables:   1

The End!