genome.fa.s3690.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003690.1 Hibiscus syriacus cultivar Beakdansim tig00007884_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65802

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8588--8617	15	2.0	15	93	0	51	43	23	13	20	1.86
9524--9566	22	2.0	22	100	0	86	18	20	13	46	1.83
13280--13358	23	3.4	24	80	5	72	43	21	10	25	1.84
13293--13361	23	3.0	24	82	2	79	42	20	10	27	1.84
14878--14941	21	3.0	21	90	0	101	34	20	28	17	1.95
15002--15215	43	5.1	42	80	7	218	31	18	24	25	1.98
14997--15215	86	2.6	82	83	6	269	32	18	23	25	1.97
19080--19419	41	8.2	41	82	2	351	36	20	17	25	1.94
23377--23437	2	30.5	2	100	0	122	49	0	0	50	1.00
29578--29653	37	2.0	38	87	2	109	43	11	11	32	1.78
31441--31660	108	2.1	104	84	9	277	20	13	19	46	1.83
31463--31673	105	2.0	108	85	8	290	20	13	18	46	1.83
32507--32857	131	2.7	131	89	0	515	31	11	16	39	1.85
34480--34532	18	2.9	18	94	0	88	22	33	24	18	1.97
35431--35488	20	2.7	20	81	10	62	27	20	18	32	1.97
39651--40327	341	2.0	335	90	3	1072	43	5	7	43	1.56
40420--40472	10	5.4	10	82	10	65	24	1	7	66	1.28
40420--40473	20	2.7	20	83	11	74	24	1	7	66	1.27
42525--42594	2	36.5	2	72	18	51	52	2	0	44	1.15
42531--42692	18	8.6	17	72	18	76	48	4	2	44	1.35
42613--42692	18	4.3	18	78	13	83	48	5	2	43	1.38
42555--42735	98	1.9	97	92	3	310	46	4	4	44	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42530--42757	13	16.4	13	71	17	122	47	4	3	43	1.43
42982--43067	7	12.4	7	76	7	86	18	0	31	50	1.48
42981--43040	20	3.0	20	87	4	93	20	0	30	50	1.49
43036--43075	21	1.9	21	89	0	62	22	0	27	50	1.50
43028--43074	14	3.4	14	80	11	51	21	0	31	46	1.51
43302--43365	19	3.3	19	88	2	92	21	35	1	40	1.63
43474--43517	24	1.9	24	86	9	65	56	4	2	36	1.32
43950--44002	2	26.5	2	100	0	106	49	0	0	50	1.00
44095--44164	20	3.5	20	72	14	72	41	0	34	24	1.55
44634--44680	14	3.7	14	71	26	50	51	4	0	44	1.21
44632--44681	23	2.1	24	96	3	93	48	4	0	48	1.20
45802--45835	15	2.3	15	90	5	52	50	0	0	50	1.00
48913--48963	19	2.7	19	96	3	95	19	9	15	54	1.68
49416--49524	55	2.0	55	85	0	146	49	11	22	16	1.77
49583--49622	16	2.5	16	91	0	62	22	2	27	47	1.64
50481--50589	55	2.0	55	83	0	137	47	10	25	16	1.78
50648--50678	16	1.9	16	93	0	53	19	6	32	41	1.77
55090--55118	3	9.7	3	100	0	58	31	0	0	68	0.89
55248--55495	42	5.8	42	74	11	155	27	18	4	50	1.67
55336--55528	84	2.2	87	79	7	205	25	17	5	51	1.65
55336--55528	42	4.5	43	70	17	116	25	17	5	51	1.65
56453--56485	3	10.7	3	93	6	57	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58630--58986	131	2.7	131	79	0	410	33	10	15	40	1.82
62685--62982	149	2.0	149	80	2	339	37	15	24	23	1.93
64241--64279	2	20.0	2	94	5	71	48	0	0	51	1.00
64582--64651	8	8.8	8	82	6	63	84	0	8	7	0.78
64582--64643	9	6.8	9	81	15	65	83	0	8	8	0.80
64618--64690	6	12.5	6	77	13	64	80	0	17	1	0.78
64617--64679	22	2.9	22	81	11	51	82	0	15	1	0.74
64584--64679	46	2.1	46	86	11	135	81	0	13	5	0.86
64592--64686	38	2.5	38	85	10	115	80	0	15	4	0.87
64601--64686	29	2.9	29	84	6	102	80	0	16	3	0.85
64582--64666	9	9.4	9	73	14	59	82	0	11	5	0.83

Tables:   1

The End!