genome.fa.s3691.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003691.1 Hibiscus syriacus cultivar Beakdansim tig00007888_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116979

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
749--774	12	2.2	12	100	0	52	23	19	15	42	1.89
1565--1595	12	2.6	12	89	0	53	9	19	3	67	1.33
2061--2100	16	2.3	18	91	8	66	20	5	2	72	1.15
2127--2202	20	3.7	20	76	15	66	23	7	0	68	1.16
2152--2200	13	3.6	14	71	17	50	20	8	0	71	1.11
4512--4573	26	2.4	25	81	13	63	53	6	3	37	1.43
15561--15686	37	3.3	37	85	7	139	45	16	20	17	1.86
15576--15690	37	3.2	37	88	4	164	45	18	19	17	1.86
18366--18408	19	2.2	20	83	4	52	30	13	2	53	1.53
19785--20002	5	43.6	5	100	0	436	39	0	0	60	0.97
20125--20180	3	18.7	3	100	0	112	33	0	0	66	0.92
21873--21907	18	1.9	18	100	0	70	17	11	25	45	1.81
22459--22565	43	2.4	43	78	9	117	42	18	14	24	1.87
23754--23816	31	2.1	31	87	3	92	25	4	11	58	1.51
24030--24103	32	2.4	30	84	8	87	41	0	0	58	0.98
24025--24104	31	2.7	29	81	11	81	41	0	0	58	0.98
25294--25853	55	10.2	55	87	1	691	32	19	19	27	1.96
26130--26202	23	3.2	23	67	18	71	49	5	19	26	1.69
26104--26274	45	3.8	45	93	0	281	46	6	22	24	1.75
26592--26619	6	4.7	6	100	0	56	71	0	0	28	0.86
26742--26822	37	2.2	36	82	8	92	74	4	4	16	1.17
26895--26923	13	2.2	13	100	0	58	79	0	6	13	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28462--30425	84	23.4	84	81	4	1954	23	18	24	32	1.97
31567--31835	100	2.7	99	84	4	314	32	15	16	34	1.91
35058--35101	20	2.2	20	100	0	88	20	34	15	29	1.94
35214--35248	6	5.7	6	96	3	61	68	0	0	31	0.90
35214--35253	18	2.2	18	86	8	55	70	2	0	27	1.01
35433--35481	26	2.0	24	84	8	62	71	0	6	22	1.08
36906--36950	3	14.3	3	86	4	54	68	0	2	28	1.01
36906--37023	15	7.5	15	68	15	60	68	0	6	23	1.19
37259--37304	20	2.2	22	84	7	60	58	10	13	17	1.62
38697--38849	37	4.4	36	71	17	128	37	13	22	27	1.91
38728--38880	64	2.3	65	88	3	218	37	13	20	28	1.91
38913--39064	36	4.4	36	67	17	124	40	15	18	25	1.89
38868--39064	101	1.9	102	91	3	326	39	14	18	27	1.90
39189--40217	106	9.6	106	91	2	1592	23	17	25	33	1.96
42682--42725	22	2.0	22	90	0	70	25	11	22	40	1.87
43368--43422	16	3.4	17	78	7	53	0	16	9	74	1.06
43369--43442	22	3.0	25	69	15	64	0	16	9	74	1.07
43384--43440	16	3.6	16	75	20	57	0	14	8	77	0.99
46419--46467	3	15.3	3	87	4	53	69	0	2	28	1.00
46419--46541	17	7.4	16	69	13	79	69	0	5	23	1.14
46423--46611	18	10.5	18	65	22	53	69	1	6	21	1.20
46778--46823	20	2.2	22	84	7	60	58	10	13	17	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50191--50309	31	3.8	30	75	10	114	32	22	21	23	1.98
50187--50311	62	2.0	62	92	0	205	32	23	20	23	1.98
51581--51611	16	1.9	16	93	0	53	64	6	6	22	1.40
56525--56551	2	13.5	2	100	0	54	48	0	0	51	1.00
56757--56940	60	3.1	59	83	7	228	33	22	4	39	1.74
62792--62835	22	2.0	22	100	0	88	40	9	22	27	1.84
69688--69712	3	8.3	3	100	0	50	36	64	0	0	0.94
69907--69960	27	2.0	27	92	0	90	37	18	16	27	1.93
71076--71113	13	2.9	13	88	7	51	68	0	0	31	0.90
71557--71598	22	1.9	22	90	0	66	64	2	0	33	1.07
73415--73467	22	2.4	22	96	0	97	39	15	3	41	1.65
78874--78917	22	2.0	23	90	4	72	29	15	27	27	1.96
80432--80475	15	2.9	15	75	0	52	22	36	4	36	1.75
83201--83472	54	5.0	54	78	5	244	31	16	16	34	1.92
83219--83472	108	2.4	108	81	2	296	32	16	16	35	1.91
89053--89326	54	5.1	54	82	4	295	33	17	17	31	1.93
89053--89330	108	2.6	106	83	2	333	33	17	17	31	1.94
94853--94897	13	3.5	13	90	0	63	46	11	2	40	1.52
103363--103525	45	3.6	44	82	8	195	37	11	14	36	1.82
103378--103547	45	3.8	45	83	3	175	37	11	14	37	1.81
103787--104272	58	8.4	58	79	7	506	35	7	14	42	1.75
103787--104272	117	4.2	114	80	8	454	35	7	14	42	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103789--104329	116	4.7	117	77	10	344	35	8	14	41	1.76
104393--104504	39	2.9	39	80	5	120	35	4	16	43	1.68
113628--113670	14	2.9	15	75	6	52	23	34	4	37	1.76

Tables:   1

The End!