genome.fa.s3693.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003693.1 Hibiscus syriacus cultivar Beakdansim tig00007894_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122399

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1534--1569	2	18.0	2	100	0	72	0	50	0	50	1.00
2132--2323	70	2.8	67	77	10	210	28	12	10	47	1.75
15029--15071	23	2.0	22	86	13	63	65	9	2	23	1.34
16466--16705	37	6.4	37	75	8	182	23	18	22	35	1.95
16364--16668	115	2.6	116	91	2	488	23	19	22	34	1.96
16466--16822	153	2.3	152	94	0	615	24	18	21	35	1.95
16619--16938	116	2.8	115	84	2	428	24	18	21	35	1.95
16734--16813	37	2.1	38	86	2	108	27	16	18	37	1.92
16365--16970	268	2.3	268	87	2	873	23	18	22	35	1.96
16861--17003	36	4.0	36	74	11	123	20	17	22	39	1.92
17832--17865	17	2.0	18	88	11	54	20	29	2	47	1.65
17988--18219	125	1.9	125	82	1	295	25	24	15	34	1.95
19361--19396	2	18.5	2	88	5	56	47	2	0	50	1.15
21497--21525	12	2.3	13	94	5	51	48	3	17	31	1.64
25594--25983	195	2.0	194	97	0	735	47	12	5	35	1.63
26437--26479	23	2.0	22	86	13	63	65	9	2	23	1.34
29267--29391	48	2.6	48	83	5	153	27	22	16	33	1.96
29305--29403	48	2.1	48	92	0	162	25	23	16	35	1.95
29432--29566	48	2.8	48	90	0	216	28	22	17	31	1.97
29254--29669	163	2.5	163	90	2	620	27	22	17	32	1.96
29479--29808	115	2.9	115	86	2	459	28	22	16	32	1.96
29715--29812	49	2.0	48	80	9	110	28	18	17	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30061--30090	15	1.9	16	93	6	53	36	0	0	63	0.95
30290--30389	24	4.0	25	75	7	96	23	44	19	14	1.86
30290--30388	50	2.0	50	84	4	128	22	44	19	14	1.86
31045--31134	2	45.0	2	100	0	180	0	50	0	50	1.00
31724--32002	73	3.8	73	80	8	289	27	11	11	49	1.74
35695--35736	2	21.5	2	95	4	77	47	0	0	52	1.00
42063--42087	4	6.2	4	100	0	50	76	0	0	24	0.80
42251--42328	35	2.2	35	97	0	147	25	19	17	37	1.94
42468--42705	84	2.9	82	84	4	284	24	17	25	31	1.97
42760--43231	124	3.8	124	93	0	775	25	18	24	31	1.98
43076--43536	249	1.9	249	87	1	692	25	18	22	33	1.97
44427--44507	23	3.7	23	85	8	98	24	33	19	22	1.97
47629--47668	21	1.9	21	89	0	62	30	10	10	50	1.69
52037--52062	6	4.3	6	100	0	52	53	0	0	46	1.00
52132--52182	18	3.0	16	78	16	50	78	5	1	13	1.02
52157--52245	43	2.0	43	89	6	135	69	5	7	16	1.32
52157--52263	43	2.5	42	85	10	128	67	4	7	20	1.34
52426--52469	16	2.8	16	100	0	88	56	13	22	6	1.61
54126--54215	42	2.2	41	84	6	110	18	12	17	51	1.76
54506--54574	19	3.6	18	71	21	52	49	0	1	49	1.09
54555--54613	23	2.5	23	83	2	64	50	1	1	45	1.21
54642--54689	22	2.1	23	88	11	73	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56902--56958	14	3.9	14	79	6	69	35	21	0	43	1.52
80679--80721	20	2.3	19	84	11	61	25	30	6	37	1.82
89169--89247	23	3.5	22	77	8	88	25	21	27	25	1.99
89169--89231	21	2.9	22	80	4	74	23	23	25	26	2.00
94923--94974	21	2.5	21	96	0	95	23	21	30	25	1.99
95042--95197	64	2.4	64	85	4	199	30	19	21	29	1.97
96551--96584	11	3.1	11	91	0	59	26	23	8	41	1.83
96549--96598	22	2.3	22	82	6	66	22	22	12	44	1.85
99521--99595	1	75.0	1	72	0	60	86	1	9	2	0.72
99522--99606	5	17.2	5	73	18	54	84	1	11	2	0.77
99527--99604	30	2.8	27	81	12	86	85	1	10	2	0.74
106704--106741	15	2.3	18	73	26	55	55	5	34	5	1.45
106709--106743	15	2.3	15	100	0	70	54	8	31	5	1.54
108702--108762	23	2.7	22	92	2	95	22	32	26	18	1.97
108702--108783	23	3.8	22	82	10	89	24	32	25	17	1.96
116741--117241	233	2.2	232	87	1	716	33	15	16	33	1.91
117276--119011	233	7.5	233	86	1	2248	32	16	16	33	1.92
118438--118524	41	2.1	42	84	2	113	29	14	19	35	1.92
119722--119774	3	17.3	3	80	7	54	32	1	0	66	1.03
121514--121584	21	3.5	20	79	7	65	29	1	1	67	1.07
121515--121582	20	3.3	20	73	4	64	27	1	1	69	1.06
121593--121692	51	2.0	50	86	9	143	57	2	4	37	1.29

Tables:   1

The End!