genome.fa.s3695.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003695.1 Hibiscus syriacus cultivar Beakdansim tig00007900_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59557

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1086--1128	3	14.7	3	95	4	79	67	0	0	32	0.91
1090--1128	20	2.0	20	100	0	78	66	0	0	33	0.92
4236--4352	39	3.0	39	80	15	127	36	11	1	49	1.50
4501--4527	2	13.5	2	100	0	54	48	0	0	51	1.00
5492--5554	31	2.0	31	96	0	117	30	25	9	34	1.88
7001--7043	14	3.1	14	100	0	86	13	30	0	55	1.39
7571--7713	71	2.0	71	98	0	277	42	10	13	32	1.79
17002--17062	23	2.8	23	75	7	65	22	34	24	18	1.96
17043--17082	21	1.9	21	89	0	62	25	40	25	10	1.86
17449--17498	27	1.9	27	88	8	77	54	4	4	38	1.38
23036--23087	26	2.0	25	85	10	70	42	7	3	46	1.51
29590--29752	87	1.9	87	86	0	236	42	12	10	33	1.77
30131--31800	182	9.3	182	85	5	2259	26	15	13	44	1.84
30131--31801	363	4.6	364	91	3	2696	26	15	13	44	1.84
30125--31801	715	2.3	718	93	1	2846	26	15	13	44	1.84
31951--31989	20	2.0	20	94	0	69	38	12	10	38	1.78
33127--33268	36	3.9	36	89	4	223	31	6	12	49	1.66
33125--33266	73	1.9	73	92	4	241	32	6	13	47	1.68
33253--34393	574	2.0	575	94	0	2016	35	9	17	37	1.82
36737--36765	15	1.9	15	100	0	58	24	13	27	34	1.93
37061--37101	21	2.0	21	85	0	55	53	2	31	12	1.51
37087--37227	71	2.0	71	88	2	212	39	17	21	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37108--37230	35	3.5	35	85	8	178	36	18	22	21	1.95
41011--41303	117	2.5	117	88	2	419	32	32	16	18	1.93
42253--42351	29	3.4	29	81	5	121	40	20	8	31	1.81
43749--43793	22	2.0	23	95	4	83	22	15	13	48	1.79
48495--48796	117	2.6	117	86	3	405	32	32	15	19	1.94
49751--49828	30	2.6	30	79	2	86	39	24	6	29	1.80
49831--49869	18	2.2	18	90	4	62	15	20	43	20	1.88
57071--57131	18	3.3	18	74	19	63	65	9	1	22	1.31
58376--58408	16	1.9	18	88	11	52	33	18	6	42	1.75
58924--58976	21	2.7	20	85	5	63	28	24	22	24	2.00
58939--58982	21	2.1	21	95	0	79	27	27	20	25	1.99

Tables:   1

The End!