genome.fa.s3697.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003697.1 Hibiscus syriacus cultivar Beakdansim tig00007906_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129590

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2863--2910	20	2.5	20	89	3	71	39	25	0	35	1.56
7933--7980	20	2.5	20	86	3	62	37	25	2	35	1.68
9353--9389	16	2.4	16	90	4	58	62	0	24	13	1.31
13108--13155	20	2.5	20	89	3	71	39	25	0	35	1.56
14714--14750	16	2.4	16	90	4	58	62	0	24	13	1.31
14992--15021	2	15.0	2	100	0	60	50	0	0	50	1.00
16379--16490	49	2.3	49	100	0	224	39	21	12	26	1.89
18515--18562	20	2.5	20	89	3	71	39	25	0	35	1.56
23774--23821	20	2.5	20	89	3	71	39	25	0	35	1.56
28077--28101	10	2.5	10	100	0	50	36	0	0	64	0.94
29044--29091	20	2.5	20	89	3	71	39	25	0	35	1.56
30654--30690	16	2.4	16	90	4	58	62	0	24	13	1.31
31819--31874	23	2.4	23	100	0	112	55	12	10	21	1.67
34204--34250	20	2.4	20	89	3	69	36	25	0	38	1.56
35814--35850	16	2.4	16	90	4	58	62	0	24	13	1.31
36323--36351	13	2.2	13	100	0	58	48	0	0	51	1.00
38669--38715	20	2.4	20	89	3	69	42	21	0	36	1.53
40485--40542	2	29.0	2	100	0	116	50	0	0	50	1.00
42112--42164	5	9.8	5	76	15	52	7	22	50	18	1.72
42105--42165	17	3.3	17	79	20	77	11	22	47	18	1.80
42078--42115	7	5.4	7	100	0	76	26	28	28	15	1.96
42098--42164	22	3.0	22	93	4	107	11	23	46	17	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42161--42211	10	5.3	10	80	17	63	27	31	29	11	1.92
42161--42211	19	2.7	18	88	11	75	27	31	29	11	1.92
42169--42231	9	6.6	9	79	13	63	30	28	26	14	1.95
42194--42232	21	1.9	21	89	5	62	33	23	25	17	1.96
48440--48516	31	2.5	31	80	2	91	27	31	27	14	1.95
48393--48516	63	2.0	63	82	6	153	25	29	28	16	1.97
49413--49465	5	9.8	5	76	15	52	7	22	50	18	1.72
49406--49466	17	3.3	17	79	20	77	11	22	47	18	1.80
49386--49416	7	4.4	7	100	0	62	25	29	29	16	1.96
49399--49465	22	3.0	22	93	4	107	11	23	46	17	1.82
49462--49580	9	12.3	9	78	11	94	30	26	27	15	1.96
49462--49540	19	4.2	18	78	16	88	27	29	29	13	1.95
49487--49581	20	4.8	19	82	11	104	30	25	26	17	1.98
49487--49580	29	3.2	29	84	14	122	30	25	26	17	1.97
53649--53696	20	2.5	20	86	3	62	37	25	2	35	1.68
62813--62887	31	2.4	31	84	4	89	13	21	30	34	1.92
62892--62944	23	2.3	23	83	0	61	18	20	28	32	1.97
62914--62982	31	2.2	31	86	0	102	13	27	30	28	1.94
63975--64014	20	2.0	20	95	0	71	45	5	17	32	1.70
67237--67273	16	2.4	16	90	4	58	62	0	24	13	1.31
73795--73838	20	2.2	20	88	4	63	36	25	0	38	1.56
75389--75425	16	2.4	16	90	4	58	62	0	24	13	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77605--77675	36	2.0	35	94	2	124	32	5	15	46	1.69
78476--78503	12	2.3	12	100	0	56	10	14	42	32	1.80
82208--82268	21	3.2	21	65	26	62	31	4	16	47	1.68
82207--82277	36	2.0	35	97	2	133	30	5	16	46	1.70
84105--84148	20	2.2	20	84	4	54	38	22	0	38	1.55
91779--91813	18	1.9	18	100	0	70	45	5	17	31	1.71
113541--113621	20	4.1	20	80	0	90	24	14	18	41	1.88
118165--118204	20	2.0	20	100	0	80	45	5	20	30	1.72
119043--119070	13	2.2	13	100	0	56	39	0	10	50	1.37
124884--124923	20	2.0	21	90	5	64	40	27	0	32	1.57
127765--127834	31	2.3	31	79	0	77	12	28	30	28	1.93

Tables:   1

The End!