genome.fa.s3699.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003699.1 Hibiscus syriacus cultivar Beakdansim tig00007911_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54052

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4414--4978	106	5.4	106	91	4	902	33	25	17	23	1.96
11395--11431	2	19.0	2	88	5	58	45	0	0	54	1.00
12578--12665	4	20.5	4	75	15	52	29	1	0	69	0.96
12578--12665	9	10.2	8	70	18	52	29	1	0	69	0.96
12592--12640	23	2.1	23	88	0	71	32	0	0	67	0.91
12588--12664	27	2.7	29	80	13	88	31	1	0	67	0.99
12580--12661	31	2.7	31	83	7	98	30	1	0	68	0.98
12756--12803	7	6.6	7	79	9	51	8	22	0	68	1.16
12762--12812	22	2.3	23	89	3	77	11	23	0	64	1.26
12744--12802	30	1.9	31	89	6	93	11	22	0	66	1.24
12930--12963	13	2.5	13	95	4	59	23	0	0	76	0.79
16982--17237	100	2.6	99	88	6	376	32	17	17	32	1.94
18350--19437	85	12.8	85	83	1	1225	34	21	18	25	1.96
20165--20229	3	22.0	3	93	3	114	35	0	0	64	0.94
21074--21101	2	14.0	2	100	0	56	50	0	0	50	1.00
21285--21323	17	2.2	17	90	9	60	28	0	5	66	1.12
21391--21473	9	9.1	9	70	15	55	25	2	1	71	1.06
21391--21472	28	2.8	28	73	19	78	25	2	1	70	1.06
21349--21430	42	1.9	42	80	11	96	21	4	1	71	1.11
21393--21472	31	2.7	30	79	11	85	26	2	1	70	1.08
21519--21586	24	2.8	23	82	8	64	23	7	1	67	1.24
21574--21657	7	11.6	7	79	12	71	7	17	0	75	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21581--21652	23	3.2	22	88	7	108	8	18	0	73	1.07
21575--21646	30	2.4	29	86	11	94	5	19	0	75	1.00
21580--21666	46	1.9	45	86	4	122	8	19	1	71	1.18
22865--22892	2	14.0	2	100	0	56	50	0	0	50	1.00
25181--25221	12	3.4	12	87	9	57	85	0	2	12	0.70
27518--27637	33	3.8	32	85	9	158	32	10	20	37	1.85
27691--27795	37	2.9	36	85	2	138	40	16	21	21	1.91
27918--28647	104	7.0	104	94	1	1210	22	18	25	33	1.97
27918--28647	210	3.5	209	94	0	1246	22	18	25	33	1.97
27918--28647	315	2.3	314	94	1	1264	22	18	25	33	1.97
32419--32463	20	2.1	22	88	8	67	66	2	4	26	1.22
32470--32510	11	3.9	11	90	9	68	82	0	0	17	0.66
35550--35617	15	4.8	14	71	14	59	25	19	32	23	1.97
35551--35630	42	1.9	42	86	0	115	25	17	33	23	1.96
39284--39326	13	3.4	12	87	9	59	37	9	9	44	1.69
40935--40981	16	3.0	16	75	12	53	19	4	6	70	1.26
41078--41124	19	2.6	18	77	16	51	27	10	2	59	1.42
47612--47746	36	3.6	36	71	8	117	33	18	9	38	1.83
47573--47754	77	2.4	76	81	6	185	33	18	10	37	1.85
47791--47958	37	4.5	37	88	3	212	30	20	10	39	1.85
47906--47958	15	2.8	20	65	28	53	22	22	13	41	1.88
47823--48088	36	7.2	36	81	7	176	31	17	12	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48013--48097	39	2.2	39	87	4	127	30	14	17	37	1.89
48101--48295	98	2.0	98	90	0	309	32	11	18	36	1.88
48338--48598	39	6.9	38	83	6	284	29	18	14	37	1.91
48339--48589	36	6.7	36	85	5	261	29	19	14	36	1.91
48429--48490	21	3.2	21	65	32	57	27	17	14	40	1.89
48600--48928	98	3.4	98	86	5	416	31	12	19	36	1.89
48934--49072	42	3.3	42	83	3	174	24	23	20	30	1.98
50704--50740	7	5.4	7	90	6	58	18	29	27	24	1.98
50704--50740	13	2.7	14	87	8	58	18	29	27	24	1.98

Tables:   1

The End!