Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000037.1 Hibiscus syriacus cultivar Beakdansim tig00000058_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71886

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3228--3295
21
3.4
21
66
25
65
23
39
1
35
1.64
3224--3316
39
2.4
39
94
0
168
22
39
4
33
1.74
3460--3489
2
15.0
2
100
0
60
50
0
0
50
1.00
11008--11032
3
8.3
3
100
0
50
64
0
0
36
0.94
11714--11745
3
10.7
3
100
0
64
65
0
0
34
0.93
13541--13595
20
2.8
20
91
0
92
27
34
27
10
1.90
13572--13663
33
2.8
33
88
3
116
27
28
35
8
1.86
13557--13651
10
8.9
10
70
13
64
25
29
34
10
1.89
13729--13774
14
3.3
14
96
0
83
6
30
36
26
1.82
14352--14406
27
2.1
26
86
3
74
43
3
0
52
1.18
17172--17210
16
2.4
16
100
0
78
38
20
0
41
1.53
20446--20491
3
15.3
3
100
0
92
67
0
0
32
0.91
27840--27879
21
1.9
21
94
0
71
17
20
17
45
1.86
27835--27907
21
3.5
21
81
1
67
26
23
17
32
1.97
27877--28010
20
6.7
20
86
1
187
39
20
19
20
1.93
28208--28273
22
3.0
22
86
4
89
25
37
13
22
1.91
28625--28677
20
2.7
20
90
0
79
16
18
26
37
1.93
30569--30713
20
7.6
20
83
9
187
40
20
20
17
1.91
30569--30732
40
4.4
39
78
14
172
42
20
20
17
1.89
30569--30743
93
1.9
93
93
0
305
42
20
20
17
1.89
30625--30749
20
6.7
19
81
10
107
43
18
20
18
1.89
30572--30732
73
2.2
73
84
5
209
42
19
20
16
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31268--31372
21
5.0
21
74
3
95
20
37
19
22
1.95
31265--31375
42
2.6
42
78
5
118
20
37
18
22
1.94
32777--32861
36
2.4
36
100
0
170
24
4
14
56
1.57
32922--33050
33
3.9
34
91
2
199
44
18
23
13
1.86
32955--33055
19
5.8
19
68
23
87
46
17
22
12
1.82
33065--33160
33
2.8
33
87
3
120
14
22
19
42
1.88
36375--36421
20
2.3
20
100
0
94
23
19
25
31
1.98
36415--36496
20
4.1
20
98
0
155
20
19
18
41
1.91
36498--36542
21
2.1
21
87
0
63
42
17
22
17
1.89
37590--37622
15
2.1
16
88
5
50
36
3
3
57
1.29
46599--46630
15
2.1
15
94
0
55
28
34
0
37
1.57
48172--48241
34
2.1
32
86
5
95
22
30
15
31
1.95
48524--48565
21
2.0
21
95
0
75
26
28
21
23
1.99
48678--48733
15
3.5
15
75
13
58
21
23
33
21
1.97
48677--48761
33
2.5
35
86
5
120
20
25
34
20
1.96
48726--48766
21
2.0
21
90
9
66
17
29
36
17
1.92
51731--51800
34
2.1
32
86
5
95
22
30
15
31
1.95
52084--52124
21
2.0
21
95
0
73
26
29
17
26
1.97
52236--52314
33
2.3
35
86
6
117
22
22
32
21
1.98
52286--52345
20
3.0
20
80
4
68
18
28
31
21
1.97
53122--53160
20
2.0
20
89
0
60
12
25
38
23
1.90
63845--63962
60
2.0
60
89
0
182
15
41
9
33
1.79

Tables:   1

The End!