Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000370.1 Hibiscus syriacus cultivar Beakdansim tig00000671_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127574

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
836--866
15
2.0
16
93
6
55
51
25
9
12
1.70
2516--2580
24
2.5
26
76
14
64
55
9
3
32
1.47
3263--3597
43
7.8
42
84
1
409
34
20
21
23
1.97
6922--7388
41
11.3
41
76
8
358
37
17
17
27
1.93
6907--7388
83
5.8
84
76
8
346
36
18
18
27
1.93
12414--12567
29
5.3
29
79
6
177
38
7
0
53
1.35
12401--12567
60
2.8
59
81
6
196
37
7
0
53
1.34
26728--26764
2
19.0
2
94
5
67
51
0
0
48
1.00
27142--27192
20
2.5
20
96
0
93
29
9
17
43
1.81
27330--28192
74
11.8
74
83
6
961
35
13
11
40
1.80
34162--34262
24
4.2
24
83
5
125
37
18
14
28
1.91
39317--39354
19
2.1
18
85
9
51
44
2
10
42
1.52
49100--49145
18
2.5
19
92
3
76
52
2
0
45
1.13
49331--49381
21
2.4
21
75
12
59
41
11
15
31
1.83
50039--50063
5
5.0
5
100
0
50
40
0
20
40
1.52
50762--50858
35
2.7
36
81
7
117
28
1
26
43
1.62
55569--55649
31
2.6
31
96
0
144
38
23
19
18
1.93
58211--58249
18
2.2
18
85
0
51
25
25
0
48
1.51
60425--60549
31
4.0
31
92
2
198
37
22
19
20
1.94
69658--70611
149
6.6
148
83
8
921
20
34
20
24
1.97
69811--70077
46
5.8
46
69
17
148
19
34
22
23
1.96
69819--70616
137
5.7
137
84
7
843
20
34
20
23
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69663--70642
286
3.4
281
81
8
1038
20
34
20
24
1.97
71561--71677
52
2.2
52
82
7
139
41
11
17
29
1.85
72086--72130
17
2.6
18
82
13
58
62
6
0
31
1.21
72085--72130
18
2.6
18
83
13
60
63
6
0
30
1.20
75267--75305
16
2.5
16
91
4
62
30
20
10
38
1.86
76828--76882
24
2.3
24
78
9
60
29
16
9
45
1.78
78647--78689
20
2.2
19
83
4
50
30
2
2
65
1.18
81281--81678
197
2.0
197
98
0
771
33
20
18
27
1.96
85992--86029
17
2.2
17
95
0
67
34
0
2
63
1.09
89210--89255
20
2.6
18
86
13
60
39
10
26
23
1.88
98925--98993
23
3.1
23
83
4
70
30
24
21
23
1.99
99009--99329
103
3.1
103
97
0
606
36
23
13
26
1.92
105263--105304
17
2.6
16
81
7
50
42
0
4
52
1.22
105085--106107
334
3.0
334
91
4
1597
43
4
8
43
1.55
115677--115740
24
2.5
26
75
12
71
54
10
3
31
1.51
115825--115873
15
3.3
15
77
5
55
28
2
2
67
1.13
115838--115896
23
2.7
22
76
7
57
35
0
5
59
1.20
127378--127430
20
2.7
20
88
5
72
33
22
24
18
1.97
127398--127523
59
2.2
56
80
6
139
25
20
24
29
1.99
127533--127573
21
2.0
21
100
0
82
21
19
39
19
1.93

Tables:   1

The End!