Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003700.1 Hibiscus syriacus cultivar Beakdansim tig00007914_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92510

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13940--14033
46
2.0
46
97
0
179
18
17
31
32
1.93
15002--15047
20
2.3
19
85
14
58
50
8
15
26
1.73
15786--16006
95
2.3
95
85
1
273
29
15
25
28
1.96
15953--16010
22
2.8
20
73
14
55
32
15
29
22
1.95
16456--16581
45
2.8
45
86
0
171
43
9
15
30
1.79
16450--16601
45
3.4
45
83
0
169
42
8
17
32
1.79
22720--22778
19
2.9
20
73
14
66
32
11
32
23
1.91
22556--22775
94
2.3
94
79
7
234
32
13
24
29
1.93
23259--23448
41
4.5
41
77
11
202
19
21
24
34
1.96
23284--23356
20
3.6
20
75
3
83
10
21
27
39
1.87
23263--23368
20
5.2
21
68
7
67
17
19
26
35
1.95
23553--23642
6
15.8
6
97
2
145
30
53
16
0
1.44
23648--23713
19
3.3
19
72
12
69
40
21
19
18
1.91
23663--23734
22
3.4
22
73
11
87
37
25
19
18
1.94
23641--23754
41
2.8
41
93
4
185
40
22
19
17
1.91
23657--23864
41
5.0
41
91
4
248
38
23
19
18
1.93
23723--23861
20
6.8
21
71
4
113
38
24
18
18
1.93
23723--23868
21
7.1
21
71
4
127
38
24
18
18
1.93
24117--24268
45
3.4
45
90
0
214
40
8
17
33
1.80
25685--25736
20
2.6
20
90
0
77
36
15
7
40
1.76
26993--27067
29
2.6
29
95
2
134
37
6
4
52
1.47
27428--27484
3
19.0
3
100
0
114
33
0
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27824--27897
30
2.4
31
82
6
80
28
12
12
47
1.77
32735--32832
45
2.2
45
88
5
144
34
18
17
29
1.94
32787--33101
54
5.8
54
79
6
323
37
20
16
25
1.93
32787--33101
108
2.9
107
82
7
359
37
20
16
25
1.93
42697--42736
19
2.1
19
86
9
55
27
25
12
35
1.92
47900--47969
3
23.7
3
91
2
115
62
1
0
35
1.04
48230--48401
91
1.9
91
91
2
283
24
19
15
40
1.90
49517--49577
21
2.9
21
80
4
70
8
9
1
80
0.98
62818--62878
3
20.7
3
89
3
97
62
1
0
36
1.05
76663--76738
35
2.2
35
90
0
116
42
21
0
36
1.53
76735--76809
35
2.1
35
97
0
141
30
0
25
44
1.55
78694--78768
35
2.1
36
90
2
116
42
25
1
30
1.63
81509--81569
31
2.0
31
93
6
106
47
13
16
22
1.81
87072--87146
21
3.7
20
87
8
107
45
13
5
36
1.66
87072--87167
21
4.9
18
80
12
68
45
13
5
35
1.66
87072--87163
40
2.3
39
83
12
107
46
13
5
34
1.65
87112--87173
19
3.1
19
79
11
54
50
14
6
29
1.68
87242--87279
20
1.9
20
88
0
58
44
13
2
39
1.57
89076--89103
6
4.7
6
100
0
56
17
32
0
50
1.47
90291--90367
2
38.5
2
89
5
120
50
2
0
46
1.15
91612--91672
30
2.1
29
82
14
72
36
11
6
45
1.66

Tables:   1

The End!