Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003702.1 Hibiscus syriacus cultivar Beakdansim tig00007916_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110464

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3397--3439
18
2.3
18
88
8
59
46
0
6
46
1.30
4729--4829
42
2.4
42
89
0
157
25
21
20
31
1.98
5217--5266
14
3.4
14
78
21
57
36
16
0
48
1.46
5206--5283
31
2.5
31
75
6
86
32
11
0
56
1.35
6061--6096
2
18.0
2
100
0
72
50
0
0
50
1.00
9957--10005
24
2.0
25
84
4
64
46
4
4
44
1.41
10021--10112
27
3.6
27
74
14
86
48
2
1
47
1.20
10024--10129
26
4.0
27
75
15
96
47
1
0
50
1.18
17442--17479
3
12.7
3
100
0
76
34
0
0
65
0.93
17936--17983
24
2.0
23
84
4
60
64
2
27
6
1.28
18890--19118
30
7.7
30
91
1
354
17
13
9
59
1.59
23872--23993
37
3.3
37
80
8
151
34
18
9
37
1.83
24127--24238
36
3.2
35
69
16
90
30
22
10
36
1.88
24042--24266
66
3.4
67
81
11
223
27
21
11
39
1.87
24292--24472
43
4.2
43
70
21
126
27
33
15
23
1.95
24313--24589
134
2.1
131
83
2
338
25
32
17
24
1.97
24778--24825
3
16.7
3
91
8
82
33
0
0
66
0.92
25327--25373
25
2.0
25
87
8
71
72
2
21
4
1.12
26302--26471
30
5.7
30
85
1
209
17
14
7
60
1.57
30647--30685
20
2.1
20
86
13
57
58
17
7
15
1.59
31502--31581
32
2.5
32
97
0
151
23
17
27
31
1.97
35901--35971
18
4.0
18
90
1
108
15
46
23
14
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35981--36060
29
2.8
29
88
0
115
23
8
22
45
1.80
35979--36081
29
3.6
29
83
0
89
24
7
25
42
1.81
36039--36104
29
2.3
29
86
0
87
27
6
19
46
1.73
49641--49680
21
1.9
21
89
0
62
10
25
40
25
1.86
53518--53557
21
1.9
21
85
10
55
35
10
2
52
1.48
54592--54694
4
25.0
4
75
14
77
73
1
2
21
1.06
54592--54717
12
11.2
12
69
19
60
71
1
3
23
1.11
54651--54734
19
4.4
20
78
14
74
67
0
4
27
1.10
56457--57233
105
7.4
105
92
1
1250
23
18
25
33
1.97
58063--58102
14
3.0
13
89
10
55
0
0
10
90
0.47
58065--58101
9
3.9
9
89
10
56
0
0
10
89
0.49
58065--58101
19
1.9
19
94
0
65
0
0
10
89
0.49
58064--58102
10
3.9
10
90
10
62
0
0
10
89
0.48
62847--64435
793
2.0
793
99
0
3142
23
23
19
32
1.97
68318--68351
10
3.4
10
87
0
50
73
0
5
20
1.04
69189--69279
4
22.0
4
72
16
53
73
2
3
20
1.08
69193--69301
48
2.2
48
79
9
114
72
1
4
21
1.12
69249--69316
19
3.6
19
74
16
54
67
0
5
26
1.13
76519--76576
26
2.2
26
78
0
62
62
12
5
20
1.49
77205--77301
7
13.9
7
75
8
72
42
35
2
20
1.64
77210--77301
21
4.4
21
73
4
87
42
34
2
20
1.64
78849--78915
23
2.9
23
84
0
89
32
17
22
26
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104592--104653
31
2.0
31
81
6
72
48
0
4
46
1.23
104686--104747
25
2.5
25
86
0
79
50
1
1
46
1.20
104696--104757
22
2.6
24
85
7
74
53
0
1
45
1.10

Tables:   1

The End!