genome.fa.s3703.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003703.1 Hibiscus syriacus cultivar Beakdansim tig00007918_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75759

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7336--7428	18	5.5	18	71	14	63	8	35	8	47	1.65
7337--7399	30	2.1	30	82	5	74	7	39	6	46	1.59
10755--10797	22	1.9	22	86	13	61	4	9	4	81	0.97
19837--19891	21	2.6	22	85	5	78	21	23	18	36	1.95
19875--20052	20	8.9	20	84	3	198	32	19	19	29	1.96
19837--20055	20	10.8	21	81	8	107	29	20	18	31	1.97
20584--20655	20	3.6	19	83	5	81	51	19	15	13	1.76
20599--20662	21	3.1	21	84	6	87	51	17	20	10	1.75
21286--21753	94	5.1	94	91	1	734	21	12	18	47	1.82
21846--21907	20	3.2	20	81	4	90	50	16	22	11	1.76
21844--21903	19	3.1	19	83	4	84	50	16	23	10	1.75
21931--22016	19	4.8	19	81	13	110	13	23	16	46	1.83
22505--22571	21	3.2	21	66	6	55	23	35	19	20	1.95
22453--22571	42	2.8	42	82	5	116	21	36	18	23	1.95
23921--23957	14	2.6	14	86	0	56	35	0	18	45	1.50
24066--24155	19	5.3	19	67	24	83	47	16	21	14	1.82
24068--24176	33	3.3	33	90	0	155	48	18	20	12	1.80
24112--24176	14	4.3	14	75	17	58	49	20	20	10	1.78
24184--24293	33	3.3	33	94	0	184	12	23	20	43	1.86
24202--24313	19	6.4	19	67	20	73	13	23	20	42	1.87
24287--24359	20	3.6	20	71	10	67	24	19	23	32	1.97
26825--26878	24	2.2	24	90	0	81	42	20	16	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27741--27807	20	3.3	20	78	12	73	32	19	22	25	1.97
27687--27828	41	3.5	41	71	13	105	32	17	22	27	1.96
48468--49014	289	1.9	289	85	3	753	37	11	11	39	1.78
50157--50190	2	17.0	2	93	0	59	52	0	47	0	1.00
50313--50340	14	2.0	14	100	0	56	28	35	0	35	1.58
59122--59166	18	2.5	19	85	7	67	71	4	6	17	1.25
60012--60074	26	2.4	26	97	0	117	26	26	19	26	1.99
67833--67875	20	2.2	20	86	0	59	34	20	13	30	1.92

Tables:   1

The End!