Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003704.1 Hibiscus syriacus cultivar Beakdansim tig00007919_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79699

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
533--566
17
2.0
17
100
0
68
41
11
11
35
1.78
1444--1480
2
18.5
2
100
0
74
51
0
48
0
1.00
7416--7444
2
14.5
2
100
0
58
51
0
0
48
1.00
14055--14084
2
15.0
2
92
0
51
50
3
0
46
1.18
15358--15411
10
5.1
10
80
12
63
61
14
9
14
1.57
15358--15404
23
2.0
23
91
0
76
61
12
8
17
1.55
15368--15394
13
2.1
13
100
0
54
62
7
7
22
1.46
18144--18173
2
15.5
2
93
6
53
53
0
0
46
1.00
24679--24754
36
2.1
36
85
7
100
47
1
3
47
1.29
24904--24970
20
3.3
20
95
0
116
26
20
4
47
1.69
25469--25574
48
2.2
48
93
1
178
36
6
8
48
1.60
29107--29134
2
14.0
2
100
0
56
50
0
0
50
1.00
40201--40245
21
2.1
21
87
0
63
31
28
24
15
1.96
41568--41667
31
3.2
31
75
12
114
29
17
18
36
1.93
41656--41749
30
3.1
30
90
3
136
21
20
26
31
1.98
45215--45347
30
4.2
30
81
13
169
47
0
2
50
1.13
45292--45392
22
4.5
22
71
7
94
38
0
9
51
1.35
45215--45347
15
8.5
15
81
11
151
47
0
2
50
1.13
45327--45421
32
3.3
32
72
27
120
33
0
11
54
1.36
45245--45402
69
2.3
67
84
6
203
43
0
6
50
1.27
45452--45569
32
3.7
32
94
0
200
32
0
12
55
1.38
45699--45746
22
2.4
18
73
23
51
33
0
14
52
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45516--45808
80
3.7
80
95
0
525
32
0
15
52
1.42
45372--45973
303
2.0
308
96
2
1124
32
0
14
53
1.42
45755--45956
32
6.7
32
81
10
232
33
0
14
52
1.42
45779--45835
18
3.4
18
69
18
59
33
0
12
54
1.38
45819--45973
84
1.9
80
92
5
256
31
0
16
52
1.44
45675--45956
148
1.9
144
94
4
494
32
0
14
52
1.42
45901--45951
14
3.1
17
72
18
54
31
0
15
52
1.43
45936--45978
22
2.0
22
95
0
77
37
0
11
51
1.39
46636--46663
6
4.7
6
100
0
56
17
14
53
14
1.73
50850--50997
76
1.9
78
90
2
237
50
15
14
20
1.78
51294--51428
68
2.0
68
84
5
175
46
11
14
27
1.79
60868--61118
76
3.3
73
82
10
272
42
3
9
44
1.55
60893--61199
38
8.1
36
76
15
232
41
4
8
45
1.54
61048--61200
74
2.0
80
86
7
219
39
4
7
48
1.51
61266--61300
5
7.0
5
87
12
54
17
2
0
80
0.84
62665--62726
23
2.8
20
83
16
61
19
8
1
70
1.20
76450--76646
41
4.7
43
72
12
151
50
6
19
23
1.69
76940--76981
22
1.9
22
85
9
59
64
0
4
30
1.14

Tables:   1

The End!