genome.fa.s3705.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003705.1 Hibiscus syriacus cultivar Beakdansim tig00007924_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  206937

Tables:   1   

This is table  1  of  1  ( 92 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8952--8986	17	2.1	17	89	5	54	54	5	0	40	1.24
9130--9168	19	2.0	20	90	5	62	38	2	0	58	1.12
10113--10156	22	2.0	22	86	4	61	47	4	2	45	1.35
11024--11063	20	2.0	20	85	4	55	42	15	7	35	1.75
11294--11337	17	2.5	18	88	7	72	6	20	40	31	1.79
12694--12726	3	11.0	3	100	0	66	66	0	0	33	0.92
23530--23627	9	10.7	9	71	21	53	82	3	6	8	0.92
23527--23615	23	3.7	23	77	15	92	80	1	7	10	0.94
23537--23594	22	2.8	20	79	20	73	81	0	6	12	0.88
23540--23605	7	9.7	7	74	21	52	80	0	7	12	0.91
23580--23637	20	2.9	19	80	16	64	86	6	1	5	0.77
24959--25683	53	13.7	53	95	2	1289	30	18	25	25	1.98
24959--25683	107	6.8	106	96	1	1289	30	18	25	25	1.98
25661--25765	54	1.9	55	86	1	149	29	15	27	27	1.96
25661--25790	54	2.4	54	79	12	142	30	16	26	26	1.96
30363--30497	67	2.0	67	92	0	225	49	18	14	17	1.80
39251--39386	21	6.6	21	76	6	143	22	17	27	32	1.97
39251--39386	62	2.2	62	96	2	247	22	17	27	32	1.97
39313--39409	41	2.4	41	94	3	169	19	17	28	34	1.95
39337--39470	41	3.2	41	86	6	148	17	18	26	38	1.92
39378--39497	22	5.7	22	75	9	108	15	18	25	40	1.90
39421--39509	22	4.3	20	74	13	65	17	15	23	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39602--39627	6	4.3	6	100	0	52	34	46	19	0	1.50
40123--40170	6	8.5	6	95	2	66	0	16	56	27	1.41
40275--40324	22	2.3	22	82	0	64	40	30	14	16	1.87
40352--40415	21	3.1	21	72	4	67	37	25	18	18	1.94
41461--41498	17	2.2	17	86	9	51	26	2	2	68	1.16
48339--48373	3	12.0	3	87	6	54	31	2	0	65	1.07
48339--48373	17	2.0	17	88	5	52	31	2	0	65	1.07
58452--58570	36	3.2	37	84	8	161	39	21	18	21	1.93
64272--64331	23	2.8	22	82	7	70	21	33	25	20	1.97
66629--66686	29	2.0	29	100	0	116	37	0	41	20	1.53
67726--68274	213	2.6	213	91	0	875	33	15	18	32	1.92
75843--75961	37	3.2	37	76	8	125	38	19	19	22	1.93
76079--76185	42	2.6	39	79	10	106	28	22	19	29	1.98
75964--76563	216	2.8	214	90	3	954	34	14	17	32	1.91
84813--84861	19	2.6	18	78	9	53	71	2	4	22	1.13
86662--86711	11	4.6	11	87	5	57	78	4	4	14	1.05
86663--86724	21	2.8	21	82	7	70	75	6	4	12	1.15
86663--86711	5	9.2	5	78	12	53	77	4	4	14	1.06
91344--91392	19	2.6	18	81	9	62	73	0	4	22	1.00
91730--91937	65	3.2	63	80	11	208	32	24	16	25	1.96
91909--91957	19	2.6	19	84	9	57	24	28	20	26	1.99
97736--97813	24	3.4	24	68	21	69	21	24	23	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99738--99766	14	2.0	15	93	6	51	6	3	27	62	1.37
100430--100638	64	3.3	63	77	10	192	31	22	19	26	1.98
100610--100658	19	2.6	19	84	9	57	24	28	20	26	1.99
100695--100762	29	2.3	29	89	0	109	26	23	26	23	2.00
108018--108315	74	4.0	74	74	5	224	41	18	18	20	1.90
120931--121040	45	2.4	45	100	0	220	20	40	20	18	1.91
122433--122470	2	20.0	2	89	10	62	50	0	0	50	1.00
124507--124547	7	6.0	7	83	13	50	14	14	12	58	1.63
124610--124647	20	2.0	19	90	10	60	15	18	5	60	1.53
127885--127917	8	4.2	8	88	3	50	78	0	21	0	0.75
132120--132270	54	2.8	54	80	2	169	37	16	21	24	1.93
132640--132718	22	3.6	22	87	0	95	34	13	10	41	1.79
133070--133522	113	4.0	112	87	3	592	37	15	19	28	1.92
135068--135112	22	2.0	22	83	8	56	26	0	4	68	1.08
136559--136623	2	32.5	2	100	0	130	49	0	0	50	1.00
141799--141838	22	1.9	20	85	10	53	45	2	2	50	1.28
143127--143156	2	15.0	2	100	0	60	50	0	0	50	1.00
143340--143490	77	2.0	75	89	6	236	43	28	7	19	1.79
145154--145193	19	2.2	18	90	4	62	37	10	10	42	1.72
146800--146850	24	2.1	24	96	0	93	27	19	33	19	1.96
156198--156380	97	1.9	97	87	1	269	33	18	16	31	1.93
156294--156678	134	2.9	133	83	2	475	34	22	15	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156107--156524	231	1.8	231	83	3	563	32	22	15	28	1.95
156595--156762	87	1.9	87	81	2	203	35	24	14	25	1.94
156906--156949	3	14.7	3	100	0	88	31	0	0	68	0.90
157228--157268	20	2.0	21	90	4	66	21	43	12	21	1.85
157530--157584	18	3.0	18	79	12	67	76	5	10	7	1.15
165416--165591	3	55.3	3	66	20	58	35	3	3	57	1.34
165416--165591	10	18.4	9	65	20	58	35	3	3	57	1.34
169570--169631	31	2.0	31	87	0	88	30	12	24	32	1.93
169573--169641	31	2.2	31	84	0	84	30	14	23	31	1.94
170451--170646	75	2.6	76	90	3	290	19	24	32	23	1.97
171254--171297	17	2.6	17	89	7	63	59	27	0	13	1.35
177113--177152	21	1.9	21	85	10	55	35	10	2	52	1.48
179073--179271	77	2.6	77	89	4	298	20	24	32	23	1.98
183984--184184	58	3.5	58	79	5	203	22	24	15	36	1.94
183961--184194	29	8.1	29	72	6	145	21	24	16	37	1.94
187021--187077	26	2.2	27	84	6	73	43	1	0	54	1.10
189633--189706	35	2.1	36	94	2	132	27	6	8	58	1.52
195054--195151	29	3.3	29	79	8	117	40	8	6	44	1.59
198867--198909	18	2.4	18	96	0	77	18	11	13	55	1.68
198940--198980	20	2.0	20	86	9	57	19	2	17	60	1.46
199522--199594	20	3.7	20	83	5	85	32	28	17	20	1.96
199521--199594	19	3.7	20	71	8	62	32	29	17	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
201212--201271	20	3.0	20	80	4	68	53	1	1	43	1.20
201189--201238	26	1.9	26	84	8	66	52	4	0	44	1.20
201216--201271	19	2.8	20	81	2	60	51	1	1	44	1.22
201218--201593	184	2.0	185	90	2	587	41	4	9	45	1.55

Tables:   1

The End!