Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003706.1 Hibiscus syriacus cultivar Beakdansim tig00007926_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65935

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2067--2157
42
2.2
42
91
0
146
21
13
23
41
1.88
3867--3893
14
1.9
14
100
0
54
51
11
29
7
1.64
8285--8311
4
6.8
4
100
0
54
25
0
0
74
0.83
18479--18642
37
4.5
37
77
7
165
45
4
6
44
1.48
18507--18643
71
1.9
71
85
2
186
45
4
5
44
1.47
19604--19681
41
1.9
41
100
0
156
20
19
25
34
1.96
19608--19725
62
1.9
62
98
0
227
20
17
26
35
1.95
19608--19702
21
4.6
21
84
2
138
22
17
27
32
1.96
19738--19779
19
2.2
19
95
0
75
21
21
14
42
1.88
28512--28702
93
2.0
94
97
1
366
30
18
14
36
1.91
29768--29809
14
3.0
14
85
0
57
9
14
19
57
1.64
31317--31352
2
18.5
2
94
5
65
47
0
0
52
1.00
31446--31652
106
2.0
106
98
0
396
32
16
7
42
1.77
32600--32657
26
2.2
26
81
9
64
31
36
8
24
1.85
33165--33217
24
2.4
23
76
14
58
45
3
0
50
1.19
33196--33257
12
4.7
14
71
16
53
41
3
0
54
1.16
33217--33257
14
2.8
15
85
7
57
39
4
0
56
1.21
34952--34995
19
2.3
19
96
0
79
47
13
34
4
1.63
38447--38485
8
4.9
8
87
0
51
28
0
20
51
1.48
38452--38485
16
2.1
16
100
0
68
29
0
17
52
1.45
38447--38494
24
2.0
24
87
0
69
31
0
18
50
1.48
38452--38494
8
5.4
8
85
0
59
32
0
16
51
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38582--38621
21
1.9
21
90
10
64
45
7
0
47
1.31
38616--38653
19
2.1
19
90
5
60
31
7
0
60
1.25
38636--38709
26
2.8
26
75
22
66
36
9
1
52
1.42
39117--39167
12
4.1
12
72
18
50
23
1
1
72
1.05
39261--39397
45
3.0
45
93
0
229
41
15
14
28
1.86
41334--41415
29
2.8
29
94
1
137
32
14
9
42
1.79
42703--42732
15
2.0
15
93
0
51
56
23
0
20
1.42
46100--46181
29
2.8
29
94
1
137
32
14
9
42
1.79
47010--47119
2
55.0
2
100
0
220
50
0
0
50
1.00
47857--47892
17
2.1
18
94
5
65
50
0
0
50
1.00
50971--51012
13
3.2
13
75
18
50
76
2
7
14
1.10
52314--52387
2
37.5
2
94
2
132
50
1
0
48
1.09
55498--55568
30
2.4
31
83
7
92
43
0
1
54
1.08
58245--58288
20
2.2
20
91
0
70
18
11
34
36
1.86
62551--62598
21
2.2
23
85
7
64
54
0
12
33
1.38
63952--64003
21
2.5
21
81
3
70
21
26
19
32
1.97
63993--64039
20
2.3
20
85
3
58
40
17
21
21
1.91
64030--64167
41
3.4
41
77
2
143
34
25
15
23
1.95
64034--64147
20
5.7
20
77
6
95
31
27
16
24
1.96
64617--64673
20
2.8
20
86
0
69
15
17
22
43
1.87

Tables:   1

The End!