Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003707.1 Hibiscus syriacus cultivar Beakdansim tig00007928_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114157
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Found at i:5405 original size:38 final size:36
Alignment explanation
Indices: 5268--5562 Score: 202
Period size: 38 Copynumber: 8.1 Consensus size: 36
5258 TGCAAATGGT
** *
5268 TTTTGAAAATATATATAATATATAGTTTTGAAAACA
1 TTTTGAAAACGTATATATTATATAGTTTTGAAAACA
*
5304 TGTTTGAAAACATTTATATATTATATAGTTTTTTGAAAACA
1 T-TTTGAAAAC--GTATATATTATATAG--TTTTGAAAACA
5345 TTTTGAAAATACGTATA-A-TATATAGTTTTGAAAACA
1 TTTTG-AAA-ACGTATATATTATATAGTTTTGAAAACA
* *
5381 TTTTGAAAACGTTTAAATATTATATAGTTTT-TAAACA
1 TTTTGAAAACG--TATATATTATATAGTTTTGAAAACA
* *
5418 TTTTGAAAAC--ATATAGTATATAGTTTTAAAAACA
1 TTTTGAAAACGTATATATTATATAGTTTTGAAAACA
* * * *
5452 TTTTTTGTAAAA-TTATATAATATATAGTTTTAAAAACTTTT
1 --TTTTG-AAAACGTATATATTATATAGTTTTGAAAAC---A
* *
5493 TTTTGAAAAC-T-TATA-TA-ATATTTTTAAAAACA
1 TTTTGAAAACGTATATATTATATAGTTTTGAAAACA
* * *
5525 TTTTTGGAAAC-TATGTA--ATATAGTTTTGAAAACT
1 -TTTTGAAAACGTATATATTATATAGTTTTGAAAACA
5559 TTTT
1 TTTT
5563 TAAAGTATAT
Statistics
Matches: 217, Mismatches: 18, Indels: 51
0.76 0.06 0.18
Matches are distributed among these distances:
33 30 0.14
34 23 0.11
35 16 0.07
36 27 0.12
37 32 0.15
38 45 0.21
39 19 0.09
40 8 0.04
41 15 0.07
42 2 0.01
ACGTcount: A:0.42, C:0.05, G:0.08, T:0.45
Consensus pattern (36 bp):
TTTTGAAAACGTATATATTATATAGTTTTGAAAACA
Found at i:5634 original size:5 final size:5
Alignment explanation
Indices: 5626--5660 Score: 54
Period size: 5 Copynumber: 7.0 Consensus size: 5
5616 TTATATCATA
5626 TTATT TTATT TTATT TTATT TTATT TCT-TT TTATT
1 TTATT TTATT TTATT TTATT TTATT T-TATT TTATT
5661 AATTTCATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 1 0.04
5 26 0.93
6 1 0.04
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:7048 original size:22 final size:20
Alignment explanation
Indices: 7005--7067 Score: 56
Period size: 21 Copynumber: 2.9 Consensus size: 20
6995 TAATTTAATT
*
7005 TAATTTTTTT-TTTACTTTAC
1 TAATTTTTTTATTT-TTTTAC
7025 TACATTTTTTTATTTTTTTAAC
1 TA-ATTTTTTTATTTTTTT-AC
7047 TAATCTTTTATTATTGTTTTT
1 TAAT-TTTT-TTATT-TTTTT
7068 TATTATTTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
20 2 0.06
21 13 0.36
22 11 0.31
23 5 0.14
24 5 0.14
ACGTcount: A:0.21, C:0.08, G:0.02, T:0.70
Consensus pattern (20 bp):
TAATTTTTTTATTTTTTTAC
Found at i:21025 original size:85 final size:84
Alignment explanation
Indices: 20840--21039 Score: 217
Period size: 85 Copynumber: 2.4 Consensus size: 84
20830 AAAAATGATT
* * * *
20840 AAATTAGGGGCCTAAACTATAAAAGTAAAAAGTATAATTGAAAAAATTAGAGACCTTAATTATAG
1 AAATTAGGGGCCTCAATTATAAAGGTAAAAAGTATAATTGAAAAAATTAGAGACCTAAATTATAG
*
20905 AGGTAAAAAGTGATAAAAA
66 AGGTAAAAAATGATAAAAA
* * * * *
20924 AAAATAGGGGCATCAATTTTAAAGGTAAAAAGTGAT-GTTGAAAAAAATTAGGGACCTAAATTAT
1 AAATTAGGGGCCTCAATTATAAAGGTAAAAAGT-ATAATTG-AAAAAATTAGAGACCTAAATTAT
**
20988 -GA-GTAAAAAATAGGATTGAAA
64 AGAGGTAAAAAAT--GATAAAAA
* *
21009 AAATTAGGGACCTCAATTATAAAGGGAAAAA
1 AAATTAGGGGCCTCAATTATAAAGGTAAAAA
21040 AGCGAGAATT
Statistics
Matches: 95, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
83 8 0.08
84 32 0.34
85 55 0.58
ACGTcount: A:0.52, C:0.06, G:0.19, T:0.23
Consensus pattern (84 bp):
AAATTAGGGGCCTCAATTATAAAGGTAAAAAGTATAATTGAAAAAATTAGAGACCTAAATTATAG
AGGTAAAAAATGATAAAAA
Found at i:21040 original size:43 final size:43
Alignment explanation
Indices: 20840--21039 Score: 176
Period size: 41 Copynumber: 4.7 Consensus size: 43
20830 AAAAATGATT
* * * *
20840 AAATTAGGGGCCTAAACTATAAAAGTAAAAAGTATAATTGAAA
1 AAATTAGGGACCTAAATTATAAAGGTAAAAAGTATGATTGAAA
* * * **
20883 AAATTAGAGACCTTAATTATAGAGGTAAAAAG--TGATAAAAA
1 AAATTAGGGACCTAAATTATAAAGGTAAAAAGTATGATTGAAA
* * * * *
20924 AAAATAGGGGCATCAATTTTAAAGGTAAAAAGTGATG-TTGAAAA
1 AAATTAGGGACCTAAATTATAAAGGTAAAAAGT-ATGATTG-AAA
* * *
20968 AAATTAGGGACCTAAATTAT-GA-GTAAAAAATAGGATTGAAA
1 AAATTAGGGACCTAAATTATAAAGGTAAAAAGTATGATTGAAA
* *
21009 AAATTAGGGACCTCAATTATAAAGGGAAAAA
1 AAATTAGGGACCTAAATTATAAAGGTAAAAA
21040 AGCGAGAATT
Statistics
Matches: 121, Mismatches: 29, Indels: 14
0.74 0.18 0.09
Matches are distributed among these distances:
41 55 0.45
42 12 0.10
43 34 0.28
44 20 0.17
ACGTcount: A:0.52, C:0.06, G:0.19, T:0.23
Consensus pattern (43 bp):
AAATTAGGGACCTAAATTATAAAGGTAAAAAGTATGATTGAAA
Found at i:28026 original size:30 final size:31
Alignment explanation
Indices: 27971--28029 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
27961 AGAATGACCG
27971 GAAACATTATTAGGCGCCAAAAAAATAACTA
1 GAAACATTATTAGGCGCCAAAAAAATAACTA
*
28002 GAAACATTATTAGGCG-CTAAAAAATAAC
1 GAAACATTATTAGGCGCCAAAAAAATAAC
28030 CGAAAATATT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 11 0.41
31 16 0.59
ACGTcount: A:0.51, C:0.15, G:0.14, T:0.20
Consensus pattern (31 bp):
GAAACATTATTAGGCGCCAAAAAAATAACTA
Found at i:38262 original size:35 final size:35
Alignment explanation
Indices: 38216--38336 Score: 128
Period size: 35 Copynumber: 3.6 Consensus size: 35
38206 AAAATTTCAA
*
38216 TGAGCTTAATGAGCAATGAGGCAAGCAACGAGCAT
1 TGAGCTTAATGAGCAACGAGGCAAGCAACGAGCAT
38251 TGAGCTTAATGAGCAACGAGGCAAGCAACGAGGCA-
1 TGAGCTTAATGAGCAACGAGGCAAGCAACGA-GCAT
* *
38286 --AGC--AACGAGCAACGATGCGAA-CAACGAGCAT
1 TGAGCTTAATGAGCAACGAGGC-AAGCAACGAGCAT
* **
38317 CGAATTTAATGAGCAACGAG
1 TGAGCTTAATGAGCAACGAG
38337 CTTAGATTAA
Statistics
Matches: 72, Mismatches: 7, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
30 3 0.04
31 19 0.26
32 2 0.03
33 4 0.06
35 41 0.57
36 3 0.04
ACGTcount: A:0.39, C:0.20, G:0.28, T:0.13
Consensus pattern (35 bp):
TGAGCTTAATGAGCAACGAGGCAAGCAACGAGCAT
Found at i:38279 original size:12 final size:12
Alignment explanation
Indices: 38262--38294 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
38252 GAGCTTAATG
38262 AGCAACGAGGCA
1 AGCAACGAGGCA
38274 AGCAACGAGGCA
1 AGCAACGAGGCA
38286 AGCAACGAG
1 AGCAACGAG
38295 CAACGATGCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.42, C:0.24, G:0.33, T:0.00
Consensus pattern (12 bp):
AGCAACGAGGCA
Found at i:38298 original size:19 final size:19
Alignment explanation
Indices: 38274--38315 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
38264 CAACGAGGCA
38274 AGCAACGAGGC-AAGCAACG
1 AGCAACGAGGCGAA-CAACG
*
38293 AGCAACGATGCGAACAACG
1 AGCAACGAGGCGAACAACG
38312 AGCA
1 AGCA
38316 TCGAATTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.43, C:0.26, G:0.29, T:0.02
Consensus pattern (19 bp):
AGCAACGAGGCGAACAACG
Found at i:53070 original size:18 final size:18
Alignment explanation
Indices: 53047--53081 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
53037 ACATGATGAC
53047 TGAGA-TATGATAGTCATT
1 TGAGATTATGATA-TCATT
53065 TGAGATTATGATATCAT
1 TGAGATTATGATATCAT
53082 ATTTTATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.34, C:0.06, G:0.20, T:0.40
Consensus pattern (18 bp):
TGAGATTATGATATCATT
Found at i:55822 original size:6 final size:6
Alignment explanation
Indices: 55811--55848 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
55801 TAATACATCG
55811 TCGGGC TCGGGC TCGGGC TCGGGC TCGGGC TCGGGC TC
1 TCGGGC TCGGGC TCGGGC TCGGGC TCGGGC TCGGGC TC
55849 AAATCCATAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.00, C:0.34, G:0.47, T:0.18
Consensus pattern (6 bp):
TCGGGC
Found at i:59645 original size:48 final size:51
Alignment explanation
Indices: 59567--59675 Score: 154
Period size: 48 Copynumber: 2.2 Consensus size: 51
59557 ATACCAATTC
* *
59567 TTTTATTAAATCTATCAAAAGATAAGTGTAATGATTATG-TTTTTTAT-TT
1 TTTTATTAAAACTACCAAAAGATAAGTGTAATGATTATGTTTTTTTATATT
*
59616 TTTTATTAAAAC-ACCAAAAGATTAA-TGTAATGATTATGTTTTTTTCTATT
1 TTTTATTAAAACTACCAAAAGA-TAAGTGTAATGATTATGTTTTTTTATATT
59666 TTTTATTAAA
1 TTTTATTAAA
59676 TTTTTTTATC
Statistics
Matches: 54, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
48 21 0.39
49 21 0.39
50 12 0.22
ACGTcount: A:0.36, C:0.06, G:0.08, T:0.50
Consensus pattern (51 bp):
TTTTATTAAAACTACCAAAAGATAAGTGTAATGATTATGTTTTTTTATATT
Found at i:59753 original size:31 final size:31
Alignment explanation
Indices: 59715--59778 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
59705 TTTTATTTTT
*
59715 TTATTAAAGTTCTCTATTAAAGTATTATTCA
1 TTATTAAAGTTCTCTATTAAAATATTATTCA
* * *
59746 TTATTAAAGTTTTTTATTAAAATATTTTTCA
1 TTATTAAAGTTCTCTATTAAAATATTATTCA
59777 TT
1 TT
59779 TATTTCTTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.55
Consensus pattern (31 bp):
TTATTAAAGTTCTCTATTAAAATATTATTCA
Found at i:61635 original size:21 final size:21
Alignment explanation
Indices: 61609--61682 Score: 121
Period size: 21 Copynumber: 3.5 Consensus size: 21
61599 GTTTCCAGAT
*
61609 TCGCAACGCGAACATCGACTA
1 TCGCAACGCGAACTTCGACTA
61630 TCGCAACGCGAACTTCGACTA
1 TCGCAACGCGAACTTCGACTA
*
61651 TCGCAATGCGAACTTCGACTA
1 TCGCAACGCGAACTTCGACTA
*
61672 TCGCAATGCGA
1 TCGCAACGCGA
61683 TAGTCCAAGC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.19
Consensus pattern (21 bp):
TCGCAACGCGAACTTCGACTA
Found at i:61787 original size:42 final size:42
Alignment explanation
Indices: 61728--61914 Score: 304
Period size: 42 Copynumber: 4.5 Consensus size: 42
61718 TGCGATTTAT
* *
61728 TCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAG
1 TCGAAGTTCGCGTTGCGATTTATTCCAAATTCATTGCGATAG
*
61770 TCGAAGTTTGCGTTGCGATTTATTCCAAATT-AGTTGCGATAG
1 TCGAAGTTCGCGTTGCGATTTATTCCAAATTCA-TTGCGATAG
*
61812 TCGAAGTTCGCGTTGCGATTTATTCCAAATTCATTGCAATAG
1 TCGAAGTTCGCGTTGCGATTTATTCCAAATTCATTGCGATAG
* *
61854 TCGAAGTTCGCGTTGCGATTTATTCTAAGTTCATTGCGATAG
1 TCGAAGTTCGCGTTGCGATTTATTCCAAATTCATTGCGATAG
61896 TCGAAGTTCGCGTTGCGAT
1 TCGAAGTTCGCGTTGCGAT
61915 AGTCCAAAAT
Statistics
Matches: 135, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
42 134 0.99
43 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.36
Consensus pattern (42 bp):
TCGAAGTTCGCGTTGCGATTTATTCCAAATTCATTGCGATAG
Found at i:61927 original size:21 final size:21
Alignment explanation
Indices: 61887--61927 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
61877 TCTAAGTTCA
* **
61887 TTGCGATAGTCGAAGTTCGCG
1 TTGCGATAGTCCAAAATCGCG
61908 TTGCGATAGTCCAAAATCGC
1 TTGCGATAGTCCAAAATCGC
61928 AACGACTGGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (21 bp):
TTGCGATAGTCCAAAATCGCG
Found at i:63274 original size:64 final size:64
Alignment explanation
Indices: 63221--63383 Score: 211
Period size: 65 Copynumber: 2.5 Consensus size: 64
63211 CGGTGCACCA
*
63221 AGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAAATAGCCTG-GTGCATCGATGCATGG
1 AGTGTGCATCGATGCATGAAATGCATTCGATGTTTG-AAAATAGCCAGAGTGCATCGATGCATGG
** * * **
63285 CTTGTGCATCGATGCATCAAATGCATTTGATGTTTTGAAAATATTCAGAGTGCATCGATGCATGG
1 AGTGTGCATCGATGCATGAAATGCATTCGATG-TTTGAAAATAGCCAGAGTGCATCGATGCATGG
* * *
63350 AGAGTGCATCGGTGCATGGAATGCATTCGATGTT
1 AGTGTGCATCGATGCATGAAATGCATTCGATGTT
63384 CAATTAATTC
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
64 38 0.46
65 45 0.54
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (64 bp):
AGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAATAGCCAGAGTGCATCGATGCATGG
Found at i:63355 original size:19 final size:19
Alignment explanation
Indices: 63331--63381 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
63321 GAAAATATTC
63331 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGCATGG
*
63350 AGAGTGCATCGGTGCATGG
1 AGAGTGCATCGATGCATGG
63369 A-A-TGCATTCGATG
1 AGAGTGCA-TCGATG
63382 TTCAATTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 4 0.14
18 6 0.21
19 19 0.66
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.24
Consensus pattern (19 bp):
AGAGTGCATCGATGCATGG
Found at i:67632 original size:5 final size:5
Alignment explanation
Indices: 67624--67649 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
67614 TATTATTATT
67624 TCGGG TCGGG TCGGG TCGGG TCGGG T
1 TCGGG TCGGG TCGGG TCGGG TCGGG T
67650 TTCTAAGTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.19, G:0.58, T:0.23
Consensus pattern (5 bp):
TCGGG
Found at i:71265 original size:64 final size:66
Alignment explanation
Indices: 71160--71322 Score: 233
Period size: 65 Copynumber: 2.5 Consensus size: 66
71150 CGGTGCACCA
*
71160 AGTGTGCATCGATGCATGAAATGCATTCGATG-TTTGAAAAATA-GCATGGTGCATCGATGCATG
1 AGTGTGCATCGATGCATGAAATGCATTCGATGTTTTGAAAAATATGCATAGTGCATCGATGCATG
71223 G
66 G
** * *
71224 CTTGTGCATCGATGCATCAAATGCATTCGATGTTTTG-AAAATATTCATAGTGCATCGATGCATG
1 AGTGTGCATCGATGCATGAAATGCATTCGATGTTTTGAAAAATATGCATAGTGCATCGATGCATG
71288 G
66 G
* * *
71289 AGAGTGCATCGGTGCATGGAATGCATTCGATGTT
1 AGTGTGCATCGATGCATGAAATGCATTCGATGTT
71323 CAATTAATTC
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
64 35 0.41
65 51 0.59
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (66 bp):
AGTGTGCATCGATGCATGAAATGCATTCGATGTTTTGAAAAATATGCATAGTGCATCGATGCATG
G
Found at i:71296 original size:19 final size:18
Alignment explanation
Indices: 71272--71320 Score: 64
Period size: 19 Copynumber: 2.7 Consensus size: 18
71262 AAATATTCAT
71272 AGTGCATCGATGCATGGA
1 AGTGCATCGATGCATGGA
*
71290 GAGTGCATCGGTGCATGGA
1 -AGTGCATCGATGCATGGA
71309 A-TGCATTCGATG
1 AGTGCA-TCGATG
71321 TTCAATTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 4 0.15
18 6 0.22
19 17 0.63
ACGTcount: A:0.24, C:0.16, G:0.35, T:0.24
Consensus pattern (18 bp):
AGTGCATCGATGCATGGA
Found at i:71903 original size:19 final size:19
Alignment explanation
Indices: 71879--72004 Score: 128
Period size: 19 Copynumber: 6.2 Consensus size: 19
71869 TCGTTGTGAT
71879 TTTGGACTATCGCAACGAA
1 TTTGGACTATCGCAACGAA
*
71898 TTTGGAATAAATCGCAACGCGAAA
1 TTTGGACT--ATCGCAA--CG-AA
71922 TTT-GACTATCGCAACGAA
1 TTTGGACTATCGCAACGAA
*
71940 TTTGGAATAAATCGCAACGTGAA
1 TTTGGACT--ATCGCAAC--GAA
*
71963 CTTGGACTATCGCAACGAA
1 TTTGGACTATCGCAACGAA
*
71982 TTTGGACTATCGCAACAAA
1 TTTGGACTATCGCAACGAA
72001 TTTG
1 TTTG
72005 AAAAATCGCA
Statistics
Matches: 90, Mismatches: 7, Indels: 20
0.77 0.06 0.17
Matches are distributed among these distances:
18 5 0.06
19 36 0.40
21 30 0.33
23 14 0.16
24 5 0.06
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (19 bp):
TTTGGACTATCGCAACGAA
Found at i:71942 original size:42 final size:42
Alignment explanation
Indices: 71880--71987 Score: 189
Period size: 42 Copynumber: 2.6 Consensus size: 42
71870 CGTTGTGATT
71880 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAAA
1 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAAA
* * *
71922 TTTGACTATCGCAACGAATTTGGAATAAATCGCAACGTGAAC
1 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAAA
71964 TTGGACTATCGCAACGAATTTGGA
1 TTGGACTATCGCAACGAATTTGGA
71988 CTATCGCAAC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (42 bp):
TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAAA
Found at i:72012 original size:19 final size:19
Alignment explanation
Indices: 71971--72016 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
71961 AACTTGGACT
* * **
71971 ATCGCAACGAATTTGGACT
1 ATCGCAACAAATTTGAAAA
71990 ATCGCAACAAATTTGAAAA
1 ATCGCAACAAATTTGAAAA
72009 ATCGCAAC
1 ATCGCAAC
72017 GCGGACTTCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.41, C:0.22, G:0.15, T:0.22
Consensus pattern (19 bp):
ATCGCAACAAATTTGAAAA
Found at i:72036 original size:59 final size:60
Alignment explanation
Indices: 71920--72036 Score: 166
Period size: 59 Copynumber: 2.0 Consensus size: 60
71910 CGCAACGCGA
* * * *
71920 AATTTGACTATCGCAACGAATTTGGAATAAATCGCAACGTGAACTTGGACTATCGCAACG
1 AATTTGACTATCGCAACAAATTTGGAATAAATCGCAACGCGAACTTCGACAATCGCAACG
*
71980 AATTTGGACTATCGCAACAAATTT-GAA-AAATCGCAACGCGGACTTCGACAATCGCAA
1 AATTT-GACTATCGCAACAAATTTGGAATAAATCGCAACGCGAACTTCGACAATCGCAA
72037 TGCGATAGTC
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
59 26 0.51
60 8 0.16
61 17 0.33
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (60 bp):
AATTTGACTATCGCAACAAATTTGGAATAAATCGCAACGCGAACTTCGACAATCGCAACG
Found at i:72100 original size:20 final size:20
Alignment explanation
Indices: 72077--72123 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
72067 GGAAACTGAT
*
72077 TTGCGATACCGGAGATCGCA
1 TTGCGATACCGGAGATCGAA
72097 TTGCGATACCGGAGATCGAA
1 TTGCGATACCGGAGATCGAA
72117 TTGCGAT
1 TTGCGAT
72124 TTAGTTGGTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (20 bp):
TTGCGATACCGGAGATCGAA
Found at i:72362 original size:26 final size:26
Alignment explanation
Indices: 72325--72380 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
72315 ACAGCAAAAA
72325 AATTGTTATTTCCAACATGTTTGACT
1 AATTGTTATTTCCAACATGTTTGACT
*
72351 AATTGTTGTTTCCAACATGTTTGACT
1 AATTGTTATTTCCAACATGTTTGACT
72377 AATT
1 AATT
72381 TTTTACTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.14, G:0.12, T:0.46
Consensus pattern (26 bp):
AATTGTTATTTCCAACATGTTTGACT
Found at i:73520 original size:58 final size:58
Alignment explanation
Indices: 73435--73573 Score: 253
Period size: 58 Copynumber: 2.4 Consensus size: 58
73425 ATAATTAACT
*
73435 ATATATTAGTCCG-CTTTCTGGAGACAATCCCATAATGTTAACTGTATATTATCAATA
1 ATATATTAGTCCGCCTTTCCGGAGACAATCCCATAATGTTAACTGTATATTATCAATA
*
73492 ATATATTAGTCCGCCTTTCCGGAGACAATCCCATAATGTTAACTGTATATTATTAATA
1 ATATATTAGTCCGCCTTTCCGGAGACAATCCCATAATGTTAACTGTATATTATCAATA
73550 ATATATTAGTCCGCCTTTCCGGAG
1 ATATATTAGTCCGCCTTTCCGGAG
73574 TTATGTTAAG
Statistics
Matches: 79, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
57 13 0.16
58 66 0.84
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (58 bp):
ATATATTAGTCCGCCTTTCCGGAGACAATCCCATAATGTTAACTGTATATTATCAATA
Found at i:84445 original size:20 final size:20
Alignment explanation
Indices: 84420--84459 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
84410 GGGCAAGTGC
84420 CCTCTTGCCCATGCTCAGGA
1 CCTCTTGCCCATGCTCAGGA
84440 CCTCTTGCCCATGCTCAGGA
1 CCTCTTGCCCATGCTCAGGA
84460 TGTGCCTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.15, C:0.40, G:0.20, T:0.25
Consensus pattern (20 bp):
CCTCTTGCCCATGCTCAGGA
Found at i:88962 original size:228 final size:227
Alignment explanation
Indices: 88522--88969 Score: 781
Period size: 229 Copynumber: 2.0 Consensus size: 227
88512 GTAAATTATC
* * *
88522 TATCCTTTTTATAAAAGTATCCATACTTATTTCACTGTGAAAATATATTTATTATTATCTTTAGT
1 TATCATTTTTATAAAAGTATCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
**
88587 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
66 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATTT
88652 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
131 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
88717 AAACATAAATTACATAACTTTCAAAAAAGTATA
196 AAACATAAATTACATAACTTT-AAAAAAGTATA
* *
88750 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTTGAAAACATATTTATTATTATATTTGG
1 TATCATTTTTATAAAAGTATCCATACTTATTTCACTG-TGAAAACATATTTATTATTATATTTAG
*
88815 TTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATT
65 TTAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATT
* *
88880 TTGTGTAAATTAAATTATTAAATTAATATTGTAGGTGGAAAACATG-AACACTATTAAATAAATT
130 TTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATT
88944 GAAACATAAATTACATAACTTTAAAA
195 GAAACATAAATTACATAACTTTAAAA
88970 GCAGTTTTAA
Statistics
Matches: 209, Mismatches: 10, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
227 4 0.02
228 74 0.35
229 131 0.63
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.40
Consensus pattern (227 bp):
TATCATTTTTATAAAAGTATCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATTT
TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
AAACATAAATTACATAACTTTAAAAAAGTATA
Found at i:89058 original size:20 final size:19
Alignment explanation
Indices: 89035--89080 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 19
89025 AGATATACCA
89035 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
89055 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
89075 GGTAAA
1 GGTAAA
89081 TTTAAAAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:89225 original size:20 final size:19
Alignment explanation
Indices: 89202--89248 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 19
89192 CGATATAACA
89202 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
89222 GGTAATAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
89242 GGTAAAA
1 GGTAAAA
89249 TGATACCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.55, C:0.09, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:89247 original size:17 final size:18
Alignment explanation
Indices: 89211--89253 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
89201 AGGTAAAAAT
89211 ATGATAAAACCGGTAATAAA
1 ATGATAAAACCGG--ATAAA
89231 ATGATAAAACCGG-TAAA
1 ATGATAAAACCGGATAAA
89248 ATGATA
1 ATGATA
89254 CCGGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.43
20 13 0.57
ACGTcount: A:0.53, C:0.09, G:0.16, T:0.21
Consensus pattern (18 bp):
ATGATAAAACCGGATAAA
Found at i:91592 original size:33 final size:33
Alignment explanation
Indices: 91550--91615 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
91540 AAATAGAAGG
*
91550 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
***
91583 AGTGGTGAAAGAAGTTTCGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
91616 TATTAAGATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.29, C:0.02, G:0.45, T:0.24
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:93454 original size:19 final size:19
Alignment explanation
Indices: 93410--93453 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
93400 AATGTCGAGT
93410 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
93429 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
93448 T-ATTTT
1 TAATTTT
93454 TTTATGTGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.32, C:0.02, G:0.09, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:94274 original size:396 final size:398
Alignment explanation
Indices: 93533--95346 Score: 3448
Period size: 396 Copynumber: 4.6 Consensus size: 398
93523 TTAAGGGTCA
* *
93533 TGTCGATACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTACAGAATGAATTAAAAACAAGGTGCATC
93598 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCA-ATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
93663 TAATATGTAA-TTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
130 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
*
93727 AATGTGTCGACACTAATATAGTCTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTG
195 AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTG
93792 CACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
260 CACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
93857 TAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTC
325 TAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTC
93922 TAAATAATG
390 TAAATAATG
93931 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTACAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTACAGAATGAATTAAAAACAAGGTGCATC
93996 AATAAAGTGTCGATCC-ATATAAAAAGTGTCGATCCC-AAATCATCGAACCCAAAAGTATAATGT
66 AATAAAGTGTCGATCCAATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGT
94059 AATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAATA
131 AATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAATA
* *
94124 ATGTGTCGACACTAATATAGTCTGTGTCGATATTTTTTCCCCAGAATGAATTAAAAACAAGGTGC
196 ATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGC
94189 ACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
261 ACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
94254 AATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
326 AATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
94319 AAATAATG
391 AAATAATG
94327 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTACAGAATGAATT-AAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTACAGAATGAATTAAAAACAAGGTGCATC
*
94391 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGAATAATG
66 AATAAAGTGTCGATCCA-ATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
94456 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
130 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
94521 AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTG
195 AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTG
94586 CACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCC-AAAGTA
260 CACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
94650 TAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTC
325 TAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTC
94715 TAAATAATG
390 TAAATAATG
94724 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTACAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTACAGAATGAATTAAAAACAAGGTGCATC
*
94789 AATAAAGTGTCGATCC-ATATATAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGAATAATG
66 AATAAAGTGTCGATCCAATATA-AAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
94853 TAATATGTAATTTTTCAATCTAACCGGTACAATTATA-CGGTTTTATGAGAGAATAAGTCTAAAT
130 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
94917 AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTG
195 AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTG
94982 CACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
260 CACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
95047 TAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTC
325 TAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTC
95112 TAAATAATG
390 TAAATAATG
95121 TGTCGACACTAATATAG-TTGTGTCGATATTTTTTTTACAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTACAGAATGAATTAAAAACAAGGTGCATC
95185 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCA-ATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
95250 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
130 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
95315 AATGTGTCGACACT-ATATAGTTTGTGTCGATA
195 AATGTGTCGACACTAATATAGTTTGTGTCGATA
95347 CTAATTTAAA
Statistics
Matches: 1397, Mismatches: 9, Indels: 21
0.98 0.01 0.01
Matches are distributed among these distances:
395 67 0.05
396 544 0.39
397 420 0.30
398 366 0.26
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (398 bp):
TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTACAGAATGAATTAAAAACAAGGTGCATC
AATAAAGTGTCGATCCAATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGT
AATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAATA
ATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGC
ACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
AATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
AAATAATG
Found at i:94544 original size:198 final size:199
Alignment explanation
Indices: 93533--95346 Score: 3306
Period size: 199 Copynumber: 9.1 Consensus size: 199
93523 TTAAGGGTCA
*
93533 TGTCGATACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
93598 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
93663 TAATATGTAA-TTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
93727 AATG
196 AATG
* * *
93731 TGTCGACACTAATATAGTCTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
*
93796 CATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
66 AATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
93861 GTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
130 GTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
93926 TAATG
195 TAATG
*
93931 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTACAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
93996 AATAAAGTGTCGATCC--ATATAAAAAGTGTCGATCCC-AAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
94058 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
94123 AATG
196 AATG
* ** *
94127 TGTCGACACTAATATAGTCTGTGTCGATATTTTTTCCCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
*
94192 CATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
66 AATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
94257 GTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
130 GTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
94322 TAATG
195 TAATG
*
94327 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTACAGAATGAATT-AAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
*
94391 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGAATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
94456 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
94521 AATG
196 AATG
* *
94525 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
*
94590 CATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCC-AAAGTATAAT
66 AATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
94654 GTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
130 GTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
94719 TAATG
195 TAATG
*
94724 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTACAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
*
94789 AATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGAATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
94853 TAATATGTAATTTTTCAATCTAACCGGTACAATTATA-CGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
94917 AATG
196 AATG
* *
94921 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
*
94986 CATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
66 AATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
95051 GTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
130 GTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
95116 TAATG
195 TAATG
*
95121 TGTCGACACTAATATAG-TTGTGTCGATATTTTTTTTACAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
95185 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
95250 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
95315 AATG
196 AATG
95319 TGTCGACACT-ATATAGTTTGTGTCGATA
1 TGTCGACACTAATATAGTTTGTGTCGATA
95347 CTAATTTAAA
Statistics
Matches: 1557, Mismatches: 46, Indels: 26
0.96 0.03 0.02
Matches are distributed among these distances:
196 170 0.11
197 166 0.11
198 426 0.27
199 442 0.28
200 353 0.23
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (199 bp):
TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
AATG
Found at i:95068 original size:794 final size:794
Alignment explanation
Indices: 93533--95346 Score: 3485
Period size: 794 Copynumber: 2.3 Consensus size: 794
93523 TTAAGGGTCA
* *
93533 TGTCGATACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTACAGAATGAATTAAAAACAAGGTGCATC
93598 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
93663 TAATATGTAATTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAATA
131 TAATATGTAATTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAATA
*
93728 ATGTGTCGACACTAATATAGTCTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGC
196 ATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGC
93793 ACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
261 ACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
93858 AATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
326 AATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
93923 AAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTACAGAATGAATTAAAAACAA
391 AAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTACAGAATGAATTAAAAACAA
*
93988 GGTGCATCAATAAAGTGTCGATCCATATAAAAAGTGTCGATCCCAAATCATCGAACCCAAAAGTA
456 GGTGCATCAATAAAGTGTCGATCCATATAAAAAGTGTCGATCCCAAATCATCGAACCCAAAAGAA
*
94053 TAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTC
521 TAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTC
94118 TAAATAATGTGTCGACACTAATATAGTCTGTGTCGATATTTTTTCCCCAGAATGAATTAAAAACA
586 TAAATAATGTGTCGACACTAATATAGTCTGTGTCGATATTTTTTCCCCAGAATGAATTAAAAACA
94183 AGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAA
651 AGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAA
94248 AAGTATAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAAT
716 AAGTATAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAAT
94313 AAGTCTAAATAATG
781 AAGTCTAAATAATG
94327 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTACAGAATGAATT-AAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTACAGAATGAATTAAAAACAAGGTGCATC
*
94391 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGAATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
94456 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTT-AATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
94521 AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTG
195 AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTG
94586 CACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCC-AAAGTA
260 CACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
94650 TAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTC
325 TAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTC
94715 TAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTACAGAATGAATTAAAAACA
390 TAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTACAGAATGAATTAAAAACA
94780 AGGTGCATCAATAAAGTGTCGATCCATATATAAAAGTGTCGATCCCAAAATCATCGAACCCAAAA
455 AGGTGCATCAATAAAGTGTCGATCCATATA-AAAAGTGTCGATCCC-AAATCATCGAACCCAAAA
94845 GAATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATA-CGGTTTTATGAGAGAATAA
518 GAATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAA
* *
94909 GTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAA
583 GTCTAAATAATGTGTCGACACTAATATAGTCTGTGTCGATATTTTTTCCCCAGAATGAATTAAAA
94974 ACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACC
648 ACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACC
95039 CAAAAGTATAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
713 CAAAAGTATAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
95104 AATAAGTCTAAATAATG
778 AATAAGTCTAAATAATG
95121 TGTCGACACTAATATAG-TTGTGTCGATATTTTTTTTACAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTACAGAATGAATTAAAAACAAGGTGCATC
95185 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
95250 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAA-TTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
95315 AATGTGTCGACACT-ATATAGTTTGTGTCGATA
195 AATGTGTCGACACTAATATAGTTTGTGTCGATA
95347 CTAATTTAAA
Statistics
Matches: 1006, Mismatches: 9, Indels: 11
0.98 0.01 0.01
Matches are distributed among these distances:
793 309 0.31
794 631 0.63
795 66 0.07
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (794 bp):
TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTACAGAATGAATTAAAAACAAGGTGCATC
AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
TAATATGTAATTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAATA
ATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGC
ACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
AATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
AAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTACAGAATGAATTAAAAACAA
GGTGCATCAATAAAGTGTCGATCCATATAAAAAGTGTCGATCCCAAATCATCGAACCCAAAAGAA
TAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTC
TAAATAATGTGTCGACACTAATATAGTCTGTGTCGATATTTTTTCCCCAGAATGAATTAAAAACA
AGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAA
AAGTATAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAAT
AAGTCTAAATAATG
Found at i:96833 original size:6 final size:6
Alignment explanation
Indices: 96808--96905 Score: 56
Period size: 6 Copynumber: 16.3 Consensus size: 6
96798 ATCGGTCGCA
* * * *
96808 GAAGAT GAAGCT GACA-AT GAAGAT GACA-AT GATGAT GATGAT GACGAT
1 GAAGAT GAAGAT GA-AGAT GAAGAT GA-AGAT GAAGAT GAAGAT GAAGAT
* ** * * * * *
96856 GAAGCT GGCGAT GAAGAT GATGAC GATGAT GATGAT GATGAT GAAGAT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
96904 GA
1 GA
96906 TGATCCAAAC
Statistics
Matches: 73, Mismatches: 15, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
5 1 0.01
6 70 0.96
7 2 0.03
ACGTcount: A:0.39, C:0.07, G:0.33, T:0.21
Consensus pattern (6 bp):
GAAGAT
Found at i:96844 original size:3 final size:3
Alignment explanation
Indices: 96836--96909 Score: 76
Period size: 3 Copynumber: 24.7 Consensus size: 3
96826 GAAGATGACA
* * * ** * *
96836 ATG ATG ATG ATG ATG ACG ATG AAG CTG GCG ATG AAG ATG ATG ACG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
*
96884 ATG ATG ATG ATG ATG AAG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG AT
96910 CCAAACAAGT
Statistics
Matches: 56, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.35, C:0.05, G:0.34, T:0.26
Consensus pattern (3 bp):
ATG
Found at i:96857 original size:42 final size:42
Alignment explanation
Indices: 96811--96901 Score: 128
Period size: 42 Copynumber: 2.2 Consensus size: 42
96801 GGTCGCAGAA
*
96811 GATGAAGCTGACAATGAAGATGACAATGATGATGATGATGAC
1 GATGAAGCTGACAATGAAGATGACAACGATGATGATGATGAC
* * ** *
96853 GATGAAGCTGGCGATGAAGATGATGACGATGATGATGATGAT
1 GATGAAGCTGACAATGAAGATGACAACGATGATGATGATGAC
96895 GATGAAG
1 GATGAAG
96902 ATGATGATCC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.37, C:0.08, G:0.33, T:0.22
Consensus pattern (42 bp):
GATGAAGCTGACAATGAAGATGACAACGATGATGATGATGAC
Found at i:98687 original size:184 final size:184
Alignment explanation
Indices: 98378--99233 Score: 1622
Period size: 184 Copynumber: 4.7 Consensus size: 184
98368 CTTTCAACAT
** **
98378 ATTATAATAAAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGGCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
98443 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
98508 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
*
98562 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
* *
98627 GGTCTATAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATATCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
98692 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
98746 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
*
98811 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATATCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
98876 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
98930 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
98995 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
99060 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
*
99114 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
*
99179 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCATA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATA
99234 CCATTTAAAA
Statistics
Matches: 662, Mismatches: 10, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
184 662 1.00
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (184 bp):
ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
Found at i:102532 original size:404 final size:404
Alignment explanation
Indices: 101691--102639 Score: 1764
Period size: 405 Copynumber: 2.3 Consensus size: 404
101681 AATTCGCAGT
101691 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTT-AAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACAT-A-TTTTAAAAAAAGTATCGATCCTTTTTATA
101755 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
64 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
*
101820 TAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCAC
129 TAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCAA
101885 TGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATA
194 TGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATA
101950 GGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTAAAATTTAAAATTCTAAATAATA
259 GGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTAAAATTTAAAATTCTAAATAATA
102015 TTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATCAATATTGT
324 TTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATCAATATTGT
102080 AGGTGGAAAACATGAA
389 AGGTGGAAAACATGAA
*
102096 ACA-TACTTAAAAAATATTGAAACATAAATTACATATCTTTAAAAAAAGTATCGATCCTTTTTAT
1 ACACT-GTTAAAAAA-ATTGAAACATAAATTACATAT-TTTAAAAAAAGTATCGATCCTTTTTAT
102160 AAAAAGTATGGACACTTTC-A-ATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAAT
63 AAAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAAT
102223 GTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATAC-TTTTTCA
128 GTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCA
102287 ATGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTAT
193 ATGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTAT
102352 AGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTTAAAATTCTAAATA
258 AGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTA--AAATTTAAAATTCTAAATA
102417 ATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATCAATAT
321 ATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATCAATAT
102482 TGTAGGTGGAAAACATGAA
386 TGTAGGTGGAAAACATGAA
102501 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACAT-A-TTTTAAAAAAAGTATCGATCCTTTTTATA
102566 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
64 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
102631 TAATAGGTA
129 TAATAGGTA
102640 TCGTTTATAT
Statistics
Matches: 530, Mismatches: 3, Indels: 20
0.96 0.01 0.04
Matches are distributed among these distances:
403 115 0.22
404 121 0.23
405 177 0.33
406 64 0.12
407 53 0.10
ACGTcount: A:0.41, C:0.09, G:0.13, T:0.38
Consensus pattern (404 bp):
ACACTGTTAAAAAAATTGAAACATAAATTACATATTTTAAAAAAAGTATCGATCCTTTTTATAAA
AAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGTA
ATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCAATG
TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
CGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTAAAATTTAAAATTCTAAATAATATT
TTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATCAATATTGTAG
GTGGAAAACATGAA
Found at i:102663 original size:23 final size:23
Alignment explanation
Indices: 102600--102664 Score: 94
Period size: 23 Copynumber: 2.8 Consensus size: 23
102590 ATAGGTAAAC
* *
102600 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTATCCCTT
**
102623 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTATCCCTT
102646 ATATAATGTAATAGGTATC
1 ATATAATGTAATAGGTATC
102665 TATCTCGCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCCCTT
Found at i:102889 original size:18 final size:18
Alignment explanation
Indices: 102868--102904 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
102858 GTAATTGGAG
102868 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
102886 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
102904 T
1 T
102905 ATATATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:102912 original size:24 final size:24
Alignment explanation
Indices: 102860--102906 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
102850 TTTCATATGT
* *
102860 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATC
*
102884 AATTTGAGTTTGAATTTCAATAT
1 AATTTGAGTTTGAATTTAAATAT
102907 ATATTTCGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATC
Found at i:103275 original size:20 final size:20
Alignment explanation
Indices: 103250--103288 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
103240 GGTTATATTG
* *
103250 TAAAGTGTCTATCCTTTTTA
1 TAAAGTGTCCATACTTTTTA
103270 TAAAGTGTCCATACTTTTT
1 TAAAGTGTCCATACTTTTT
103289 TCACTGTGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.15, G:0.10, T:0.49
Consensus pattern (20 bp):
TAAAGTGTCCATACTTTTTA
Found at i:104429 original size:3 final size:3
Alignment explanation
Indices: 104421--104480 Score: 113
Period size: 3 Copynumber: 20.3 Consensus size: 3
104411 ATTTGACCTT
104421 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
104469 TTA -TA TTA TTA T
1 TTA TTA TTA TTA T
104481 AAGTTTAACA
Statistics
Matches: 56, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 2 0.04
3 54 0.96
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:104659 original size:19 final size:21
Alignment explanation
Indices: 104619--104661 Score: 63
Period size: 19 Copynumber: 2.1 Consensus size: 21
104609 AGAATAAAAT
*
104619 ATATTTTTTAAAATTAATTAA
1 ATATTTTTTAAAATTAAATAA
104640 ATATTTTTT-AAA-TAAATAA
1 ATATTTTTTAAAATTAAATAA
104659 ATA
1 ATA
104662 ATCTATTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 9 0.43
20 3 0.14
21 9 0.43
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
ATATTTTTTAAAATTAAATAA
Found at i:107062 original size:99 final size:100
Alignment explanation
Indices: 106868--107068 Score: 350
Period size: 99 Copynumber: 2.0 Consensus size: 100
106858 AATAAATTTA
**
106868 ATAATCAATCAAATTTTATAAATTTAAAAAATCTTCATGAGTCTAATAATTTTTTTTTGGGGTGC
1 ATAATCAATCAAATTTTATAAATTTAAAAAATCTTCATGAG-CTAATAAAATTTTTTTGGGGTGC
*
106933 TTACAAGCCTAAAAATTCATCTTCAATTAAATGTCT
65 TTACAAGCCTAAAAATTCACCTTCAATTAAATGTCT
*
106969 ATAATCAATCAAATTTTATAAATTTAAAAAGTCTTCATGAG-TAATAAAATTTTTTTGGGGTGCT
1 ATAATCAATCAAATTTTATAAATTTAAAAAATCTTCATGAGCTAATAAAATTTTTTTGGGGTGCT
107033 TACAAGCCTAAAAATTCACCTTCAATTAAATGTCT
66 TACAAGCCTAAAAATTCACCTTCAATTAAATGTCT
107068 A
1 A
107069 CTAAACCTGG
Statistics
Matches: 96, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
99 56 0.58
101 40 0.42
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (100 bp):
ATAATCAATCAAATTTTATAAATTTAAAAAATCTTCATGAGCTAATAAAATTTTTTTGGGGTGCT
TACAAGCCTAAAAATTCACCTTCAATTAAATGTCT
Done.