genome.fa.s3711.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003711.1 Hibiscus syriacus cultivar Beakdansim tig00007937_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66733

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5621--5665	19	2.4	19	92	0	81	42	15	20	22	1.89
5680--5777	21	4.8	20	83	2	79	37	24	19	18	1.94
5700--5753	21	2.6	21	100	0	108	29	29	16	24	1.97
6832--6902	37	1.9	37	85	5	99	46	8	2	42	1.49
17041--17075	4	8.8	4	100	0	70	74	0	0	25	0.82
21485--21511	14	1.9	14	100	0	54	7	29	11	51	1.64
23240--23336	42	2.3	42	89	0	149	41	23	14	20	1.89
29508--29584	39	2.0	39	97	0	145	33	6	6	53	1.53
29606--29709	49	2.1	50	89	7	158	23	22	3	50	1.65
33772--33824	20	2.7	20	93	0	88	18	9	37	33	1.83
33911--33966	21	2.7	21	88	0	85	26	19	17	35	1.94
34015--34065	21	2.4	21	90	0	75	25	15	15	43	1.86
34071--34146	20	3.8	20	84	1	100	36	17	9	36	1.81
35100--35141	19	2.2	19	86	0	57	33	14	26	26	1.94
35516--35676	54	3.0	54	85	0	214	36	11	19	32	1.87
35878--36078	68	3.0	68	83	1	242	33	14	20	30	1.93
36010--36247	81	2.9	81	94	0	422	34	13	23	28	1.93
36256--36407	45	3.3	45	91	4	234	48	7	19	25	1.75
36261--36444	92	2.0	90	84	6	237	46	8	20	25	1.78
40331--40402	22	3.5	20	87	9	101	33	15	25	26	1.95
40747--40878	55	2.4	54	84	1	174	37	11	18	33	1.86
46199--46317	42	2.8	42	94	0	202	18	18	16	46	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46476--46526	21	2.3	23	86	10	70	50	0	0	49	1.00
46493--46587	22	4.0	23	73	20	70	50	1	0	48	1.07
46489--46674	29	6.3	29	70	22	99	47	0	1	50	1.12
46690--46859	90	1.9	86	81	9	200	49	4	0	45	1.27
47004--47055	20	2.5	21	93	6	88	32	15	11	40	1.83
47020--47064	20	2.2	20	88	0	63	35	17	6	40	1.76
47038--47089	15	3.5	15	89	5	79	36	19	7	36	1.80
55478--55512	15	2.3	15	95	0	61	62	8	22	5	1.45
60923--61108	68	2.7	67	92	0	300	30	14	24	30	1.95
61082--61292	81	2.6	81	89	0	323	36	10	21	31	1.88
61306--61494	45	4.2	45	87	4	240	46	6	20	27	1.75
62097--62143	2	24.0	2	95	4	87	48	0	0	51	1.00
65114--65170	30	1.9	30	100	0	114	22	10	35	31	1.88
65981--66040	24	2.4	25	84	15	72	50	3	0	46	1.18
66001--66047	13	3.8	12	78	10	51	44	2	0	53	1.12
66007--66089	42	1.9	44	83	9	109	45	1	1	51	1.16
66067--66152	18	4.6	18	76	18	61	41	0	2	55	1.12
66205--66255	22	2.3	22	80	9	59	52	0	1	45	1.12
66278--66319	14	2.8	15	82	7	50	45	0	4	50	1.23
66394--66448	14	4.1	15	73	21	59	58	0	1	40	1.09

Tables:   1

The End!