genome.fa.s3712.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003712.1 Hibiscus syriacus cultivar Beakdansim tig00007938_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84003

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4142--4183	18	2.3	19	84	12	61	61	4	9	23	1.45
9690--9731	18	2.3	19	84	12	61	61	4	9	23	1.45
10148--10182	18	1.9	18	100	0	70	40	0	11	48	1.39
16167--16228	29	2.1	30	84	3	81	35	19	4	40	1.73
17159--17229	24	3.2	24	63	29	66	57	0	5	36	1.22
17152--17238	42	2.1	42	97	0	165	55	0	6	37	1.27
18615--18660	22	2.1	22	87	0	65	26	4	4	65	1.30
19986--20029	2	22.0	2	100	0	88	50	0	0	50	1.00
28578--28612	17	2.1	17	100	0	70	28	0	22	48	1.51
29249--29278	13	2.2	14	94	5	53	46	6	6	40	1.56
30531--30582	26	2.0	26	85	3	70	28	23	3	44	1.71
31133--31186	11	4.8	11	83	2	63	11	1	9	77	1.06
33334--33401	35	1.9	36	88	8	104	20	11	7	60	1.55
33807--33846	18	2.2	18	100	0	80	42	27	7	22	1.80
33904--34158	95	2.7	94	87	2	352	32	17	18	31	1.94
35205--35324	43	2.8	43	82	2	161	33	29	14	23	1.94
35463--36049	124	4.7	124	89	0	816	31	24	17	26	1.97
36059--36622	84	6.7	84	84	0	644	33	23	18	23	1.96
36059--36622	168	3.4	168	86	0	716	33	23	18	23	1.96
38465--38548	7	11.1	7	72	22	64	20	3	0	76	0.94
38446--38547	41	2.6	40	77	12	95	23	3	0	71	1.09
38474--38547	16	4.7	15	74	22	71	20	4	0	75	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38465--38562	21	4.4	21	75	21	85	19	5	0	75	0.98
38492--38542	18	2.8	18	82	8	59	23	3	0	72	1.01
38613--38656	23	1.9	23	86	9	63	11	4	4	79	1.02
38681--38728	11	4.5	11	78	2	53	8	2	12	77	1.08
44302--44344	18	2.4	18	80	0	50	51	0	18	30	1.47
46003--46457	80	5.7	80	93	1	707	21	21	25	31	1.98
46617--46642	13	2.0	13	100	0	52	38	15	7	38	1.76
51536--51986	80	5.7	80	89	1	645	23	20	24	31	1.98
54083--54124	18	2.3	18	80	8	50	33	9	0	57	1.31
54277--54337	32	1.9	32	86	0	86	26	13	18	42	1.86
55870--55910	16	2.5	16	88	4	55	48	2	0	48	1.14
56140--56197	6	9.7	6	84	0	62	8	0	43	48	1.34
56077--56197	18	6.8	18	70	1	64	9	4	42	43	1.57
56890--57016	61	2.1	60	83	1	155	37	8	5	48	1.57
57086--57224	18	7.9	18	74	16	105	41	5	5	47	1.49
57083--57225	51	2.8	51	90	2	205	41	4	5	47	1.48
57150--57237	33	2.7	31	84	10	106	40	6	4	47	1.50
57209--57247	13	3.0	13	84	0	51	35	5	5	53	1.45
57360--57394	15	2.4	15	95	4	63	48	0	5	45	1.26
57363--57434	27	2.7	27	82	0	72	47	2	6	43	1.45
57554--57588	18	1.9	18	88	0	52	45	5	5	42	1.51
57683--57802	2	58.5	2	71	14	84	44	2	5	47	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57471--57799	13	24.9	13	65	20	91	44	4	6	43	1.51
57724--57791	29	2.3	29	80	7	75	47	4	4	44	1.43
57417--57802	73	5.4	71	69	21	231	43	4	7	44	1.53
59499--59543	21	2.1	21	88	8	65	73	0	0	26	0.84
59500--59543	22	2.0	21	86	4	61	75	0	0	25	0.81
61027--61149	45	2.8	45	86	3	153	23	37	17	21	1.94
61069--61167	45	2.2	45	85	0	126	25	38	15	21	1.92
63281--63307	12	2.2	12	100	0	54	48	0	0	51	1.00
65386--65421	17	2.1	18	89	5	56	22	0	0	77	0.76
65388--65439	9	5.8	9	84	6	52	32	0	0	67	0.91
65407--65447	2	21.0	2	80	14	50	43	0	2	53	1.13
65511--65591	33	2.4	33	93	2	135	46	3	6	43	1.46
65421--65721	159	1.9	164	84	12	419	46	2	5	44	1.40
65544--65643	50	2.0	48	90	5	155	49	4	5	42	1.43
65544--65643	49	2.1	47	87	9	139	49	4	5	42	1.43
65591--65837	36	6.8	36	70	20	153	45	3	4	46	1.42
65705--65745	2	20.5	2	100	0	82	51	0	0	48	1.00
65591--65723	39	3.4	38	78	18	123	48	3	3	45	1.36
65729--65837	38	2.8	38	82	9	141	42	4	6	46	1.50
65795--65849	28	2.0	28	89	3	85	43	3	7	45	1.49
65579--65851	140	2.0	138	87	7	398	45	3	4	46	1.39
67018--67066	22	2.2	22	82	7	55	20	6	0	73	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66997--67060	18	3.7	17	74	10	58	15	6	1	76	1.06
67131--67174	23	1.9	23	85	0	61	18	6	0	75	1.02
67141--67193	26	2.2	23	83	10	61	20	3	1	73	1.08
67238--67267	12	2.5	12	94	0	51	36	0	3	60	1.14
72623--73092	255	1.8	255	86	1	683	35	19	18	27	1.95
72621--73092	85	5.6	84	86	2	613	35	19	18	27	1.95
73592--73630	13	3.1	13	77	7	53	17	0	2	79	0.84
73592--73641	25	2.0	25	84	4	64	22	2	2	74	1.03
73653--73913	34	7.3	35	77	15	200	45	3	6	43	1.47
73723--73915	36	5.4	35	85	9	248	47	4	6	42	1.48
73723--73916	73	2.7	71	83	9	261	46	4	6	42	1.47
73901--73957	2	29.5	2	92	7	100	50	0	0	49	1.00
73723--73972	73	3.4	75	81	9	200	46	3	6	43	1.45
73946--74040	23	4.0	24	80	13	117	46	4	6	43	1.48
73948--74041	22	4.0	23	79	15	95	45	4	6	43	1.49
73946--74040	48	2.0	47	86	8	131	46	4	6	43	1.48
75455--75490	11	3.3	11	88	0	54	22	0	0	77	0.76
81889--81949	22	2.7	23	82	5	70	18	24	32	24	1.97

Tables:   1

The End!