Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003713.1 Hibiscus syriacus cultivar Beakdansim tig00007939_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77291
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Found at i:1012 original size:4 final size:4
Alignment explanation
Indices: 1003--14445 Score: 17569
Period size: 4 Copynumber: 3379.5 Consensus size: 4
993 TCTCCTTCCA
*
1003 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
1051 ATGC ATAC ATAC ATTC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1099 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
1147 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * *
1195 ATAC ATGC ATAC CTGC ATAC ATGC ATAC CTGC ATAC ATGC ATAC CTGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
1243 ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
1291 ATAC ATGC ATAC CTGC ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1339 ATAGC ATAC ATAC ATAC A-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATA-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
1387 ATAC ATGC ATAC ATAC ATGC ATAC ATAC --AC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1433 ACTAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC
1 A-TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1481 ATAC ATAC ATAC AT-C ATAC ATA- ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** * * * *
1527 ATAC ACGC ATAC ATGC -TAC AT-- ATAC ATGC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
1572 ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
1620 ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATGC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
1668 ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-GC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * *
1715 ATAC ATGC ATAC ATGC ATAC CTGC ATAC ATGC ATAC CTGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
1763 ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * *
1811 ATAC ATGC ATAC CTGC ATAC ATGC ATAC CTGC ATGC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * **
1859 ATGC ATAC ATGC ATGC ATGC ATAC ATGC ATGC ATGC ATAC ATGC ATGT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* ** * * * * * * * *
1907 ATGC ATGT ATGC ATGC ATGC ATGC ATAC ATGC ATGC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
1955 ATGC ATGC ATCC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
2003 ATAC ATAC ATAC A-AC ATAC ATAC ATGC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
2050 ATAC ATAC ATAC ATAC ATGAC ATAC ATAC ATGC ATAC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC AT-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
2099 ATAC ATAC ATAC ATAC ATA- ATAC ATAC ATAC ATAAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-AC ATAC ATAC ATAC
2147 ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC --AC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
2192 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATAC ATACGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA--C
* * * * *
2242 ATAC ATGC ATAC AT-- ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
2288 ATAC -TGC ATAC ATGC ATAC ATGC AT-C ATGC ATAC ATGC ATAC -TGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
2333 ATAC ATAC ATGC -TGC ATGC ATGC ATGC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
2380 ATAC ATAC -TAC ATAC ATAC ATAC ATAC CTAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
2427 ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
2474 ATAC ATAC ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATCC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
2520 ATA- ATCC ATAC ATCC ATAC ATAC ATAC ATCC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
2567 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
2615 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
2663 ATAC ATAC ATAC ATCC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
2711 ATAC ATAC ATGC ATGC ATAC ATGC ATAC ATAC ATGC ATGC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
2759 ATGC ATAC ATCC ATAC ATAC ATAC ATAC ATCC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
2807 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
2855 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATCC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
2903 ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATAC ATAC ATGC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
2951 A-AGC ATAC ATAC ATGC ATGC ATGC ATAC ATGC ATAC ATGC ATAC ATGC
1 ATA-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
2999 ATAC ATGC ATAC AT-G ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3046 ATAC ATAC AT-C ATAC ATAC ATAC ATAC ATAC ATAC ATAAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-AC ATAC ATAC
* *
3094 ATAC ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATCC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
3140 ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
3188 ATGC ATGC ATAC ATGC ATAC ATAC ATGC ATGC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
3236 ATAC ATGC ATAC ATGC ATAC ATAC ATAC ATAC ATGC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
3284 ATAC ATAC ATGC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
3332 ATAC ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-C ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
3379 ATAC AAAC ATGC ATAC ATGC ATATGC ATAC ATGC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATA--C ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
3429 ATAC ATGC ATAC ATGC ATAC ATAC ATAC ATGC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
3477 ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
3525 ATAC ATGC ATAC ATGC ATAC ATAC ATCC ATAC ATGC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
3573 ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATGC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
3621 --AC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATAC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
3667 ATGC -TAC ATGCC ATAC ATAC ATAC ATAC AT-C ATAC ATGC ATAC ATGC
1 ATAC ATAC AT-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
3714 ATAG ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3762 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
3810 ATAC ATAC ATAC ATAC ATGC ATGC ATAC ATGC ATAC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
3858 ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
3906 ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
3954 ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
4002 ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
4047 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
4095 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** * *
4143 ATGT ATAC ATGC ATAC ATAC ATGC ATGTAC ATAC ATAC ATAC ATAC AT--
1 ATAC ATAC ATAC ATAC ATAC ATAC A--TAC ATAC ATAC ATAC ATAC ATAC
* * * *
4191 ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATAC ATGC ATAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * *
4239 ATAC ATGC ATAC ATGC ATGC ATGC ATAC ATGC ATGC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
4287 ATGC ATGC ATAC ATGC ATAC ATGC ATAC A-GC ATAC ATGC ATAC -TGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
4333 ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
4381 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
4429 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-C
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
4476 ATAC ATCC ATAC ATAC ATAC ATAC ATACC ATAC ATAC ATAC ATCC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC ATAC ATAC
* * * *
4525 ATCC ATAC ATAC ATCC ATAC ATAC ATAC ATAC ATAC AT-C ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
4572 ATGC ATGC ATGC ATGC AT-C -TAC ATAC ATAC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
4618 ATAC ATAC ATAC ATGC ATAC ATAC ATCC ATAC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
4666 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
4714 ATGC ATGC ATGGC ATGC ATGC AT-C -TGC ATGC ATAC ATAC ATAC ATAC
1 ATAC ATAC AT-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
4761 ATAC ATGC ATAC ATAC ATAC -TAC ATAC ATAC AT-C ATAC --AC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
4805 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
4853 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
4901 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
4949 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
4997 ATGC ATAC ATAC ATGC ATAC ATGC ATGC ATAC ATAC AT-C ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
5044 ATAC ATGC ATGC ATAC ATAC ATAC ATGC ATAC ATGC ATAC ATGC ATAT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** * * *
5092 ATGG ATAC ATAC ATAC ATAC ATGC ATAC ATAC AT-C ATAC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
5139 ATAC ATAC AT-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
5186 ATAC ATAC ATCC ATAC ATCC ATAC ATAC ATAC ATCC ATAC ATAC ATCC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
5234 ATAC ATCC ATAC AT-- ATAC AT-C ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * *
5279 ATGC ATGC ATGC ATGC ATGC ATGC ATGC ATAC ATAC ATAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
5327 ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATAC ATCC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
5375 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
5423 ATGC ATGC ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAT ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
5471 ATAC ATAC ATAC ATAC ATAC ATAC ATCC ATAC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
5519 ATAC ATGC ATAC ATGC ATAC ATAC ATAC ATAC ATGC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
5567 ATAC ATAC ATGC ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
5615 ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
5663 ATAC ATAC ATAC ATGC ATGC ATAC ATAC ATAC ATGC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
5711 ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
5759 ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATCC AT-- ATAC ATGC -TAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
5804 ATAC ATAC ATGC ATAC ATGCAC ATGC ATAC ATAC ATAC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC AT--AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
5854 ATAC ATAC AT-C ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
5901 ATAC ATAC ATAC ATAC ATAC AT-C ATAC ATGC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
5948 ATAC ATAC ATAC ATGC ATGC ATAC ATAC ATAC ATAC ATGC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
5996 ATGC ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAT ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
6044 ATAC ATAC ATAC ATAC AT-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
6091 ATAC ATAC ATGC ATAC ATAC ATCC ATAC ATGC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
6139 ATAC ATAC ATAC ATGC ATAC ATGC ATGC ATGC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
6187 ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATAC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
6235 ATGC ATAC ATGC ATGC ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
6283 ATGC ATAG ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAT ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
6331 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
6379 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
6427 ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
6475 ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
6523 ATGC ATAC ATGC ATAC ATGC ATATGC ATAC ATGC ATAC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATA--C ATAC ATAC ATAC ATAC ATAC ATAC
* *
6573 ATAC ATAC ATAC ATAC ATGC ATAC ATAC ATAC AT-C ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
6620 ATAC ATAC ATAC ATAC ATAC ATAC ATGCAC ATAC ATAC --AC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC AT--AC ATAC ATAC ATAC ATAC ATAC
* * * *
6668 ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATGC ATGC -TA- ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
6714 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
6760 ATAC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC AATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -ATAC
* * * * * *
6809 ATAC ATGC ATGC ATAC ATGC ATAC ATGC AT-C ATGC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
6856 ATGC ATAC ATGC ATGC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
6904 ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
6952 ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
7000 ATAC ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATACC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-C
* * * * *
7049 ATGC ATAC ATGC ATAC ATAC ATAC ATGC ATAC ATGC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
7097 ATAC AT-C ATAC ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
7144 ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATAC ATGC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
7192 ATAC ATAC ATGC ATGC ATAC ATGC ATAC ATAC -TGC ATAC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
7239 ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
7287 ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
7335 ATAC ATAC ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ACAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
7383 ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
7431 ATGC ATAC AT-C ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
7478 ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
7526 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
7574 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
7622 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
7670 ATAC ATGC ATAC ATAC ATGC ATAC ATAC ATAC ATGC ATAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
7718 ATGC ATAC ATGC ATAC ATAC ATGC ATGC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
7766 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
7814 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
7862 ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
7910 ATAC ATAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
7956 ATAC ATGC AT-C ATAC ATGC ATGC ATGC ATAC ATGC ATGC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * *
8003 ATGC ATAC ATGC ATAC ATGC ATGC ATGC ATAC ATGC ATGC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
8051 ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
8099 ATGC ATAC ATGC ATGC ATGCAC ATAC ATGC ATAT ATGC ATGC AT-- ATAC
1 ATAC ATAC ATAC ATAC AT--AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * *
8147 ATGC ATGC ATAC ATGC ATGC ATGC ATAC ATGC ATGC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
8195 ATGC ATAC ATAC ATGC AT-C ATGC ATAC ATGC ATAC ATAC AT-G ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
8241 ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
8289 ATAC ATAC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * **
8337 ATAC ATGC ATAC ATAC ATGC ATGC ATAC ATGC ATAC ATAC ATGT ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
8385 ATGC ATAC ATAC ATGC ATAC ATGC ATAC ATAC ATAC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
8433 ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
8481 ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
8529 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
8577 ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
8625 ATAC ATGC ATAC ATAC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
8673 ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATAC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
8721 ATAC ATGC ATAC ATGC ATAC ATGC ATGC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
8769 ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
8817 ATAC ATAC ATAC ATGC ATGC ATAC ATGC ATAC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
8865 ATGC ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATAC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
8913 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
8961 ATAC ATAC AT-G ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
9008 ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATGC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
9054 ATAC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
9102 ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATAC ATAC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
9150 ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
9198 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
9246 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
9294 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
9342 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-- ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
9388 ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
9434 ATAC ATAC ATGC ATGC ATAC ATGC ATAC ATAC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
9482 ATGC ATGC ATGC ATAC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
9530 ATAC ATGC ATGC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
9578 ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
9626 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
9674 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC AT--
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
9719 ATAC ATCC ATAC ATAC ATAC ATCC ATACC ATAC ATCC ATAC ATAC ATCC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC ATAC ATAC
* * *
9768 ATAC AT-C ATAC ATATCC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATA--C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
9817 ATGC ATGC ATGC AT-C ATAC ATAC ATAC ATAC A-GC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
9863 ATAC ATAC ATAC ATGC ATAC ATAC ATCC ATAC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
9911 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * *
9959 ATGC ATGC ATGC ATGC ATGC ATGC ATGC ATGC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
10007 ATAC ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
10055 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
10103 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
10151 ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
10198 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA- ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
10245 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
10293 ATAC ATAC ATAC --AC ATAC ATGC ATAC ATAC ATGC -TAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
10338 ATAC ATGC ATGC ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * **
10386 ATAC ATAC ATAC ATGC ATAC ATGC ATAC ATGC ATAT ATGG ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
10434 ATAC ATAC ATGC ATAC ATAC ATCC ATAC ATGC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
10482 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATCC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
10530 ATAC ATCC ATAC ATAC ATAC ATCC ATAC ATAC ATCC ATAC ATCC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
10578 ATCC ATAC ATCC ATAC ATAC ATCC ATAC ATAC ATAC ATAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
10626 ATGC ATGC ATGC ATGC ATGC ATGC ATAC ATAC ATAC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
10674 ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATAC ATCC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
10722 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
10770 ATGC ATGC ATGCAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC AT--AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
10820 ATAC ATAC ATAC ATAC ATAC ATCC ATAC ATAC ATGC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
10868 ATGC ATAC ATGC ATAC ATAC ATAC ATAC ATGC ATGC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
10916 ATAC ATGC ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATGC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
10964 ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
11012 ATAC ATAC ATGC ATGC ATAC ATAC ATAC ATGC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
11060 ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATGC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
11108 ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
11156 ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATCC ATAC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
11204 ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATGC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
11252 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
11300 ATAC ATGC ATAC ATGC ATGC ATAC ATAC ATAC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
11348 ATAC ATGC ATAG ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
11396 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
11444 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* ** * * * *
11492 ATAC ATAC ATGC ATGT ATAC ATGC ATGC ATAC ATAC ATGC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
11540 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
11588 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
11636 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
11684 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
11732 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* ** *
11780 ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGT ATAC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
11828 ATGC ATGTAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC
1 ATAC A--TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
11878 ATGC ATAC ATGC ATAC ATAC ATGC ATAC ATGC ATAC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
11926 ATAC ATGC ATGC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
11974 ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATAC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
12022 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
12070 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
12118 -TAC ATAC ATAC ATAC ATAC ATAC ATCC ATAC AT-C ATAC -TAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
12163 AT-C ATAC ATAC ATCC ATAC ATCC ATAC ATCC ATAC ATCC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
12210 ATCC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATGC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
12258 ATGC ATAC ATAC ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
12306 ATAC ATAC ATCC ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
12354 ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATGC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
12402 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
12450 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
12498 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
12546 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
12594 ATAC ATAC ATAC ATAC ATGC ATGC ATAC ATGC ATAC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
12642 ATGC ATGC ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * **
12690 ATAC ATAC ATGC ATAC ATGC ATAC ATGC ATAT ATGT ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
12738 ATAC ATGC ATAC ATAC ATCC ATAC ATGC ATGC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
12786 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
12834 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
12882 ATAC ATAC ATAC ATGC ATGC ATAC ATGC ATAC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** * ** *
12930 ATAC ATAC ATAC ATAC ATGT ATAC ATGC ATAC ATAC ATGT ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
12978 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
13026 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
13074 ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATAC ATAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
13122 ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
13170 ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
13218 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
13266 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
13314 ATAC ATAC ATAC ATCC ATAC ATCC ATAC ATAC ATAC ATCC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
13362 ATCC ATAC ATCC ATAC ATCC ATAC ATCC ATAC ATAC AT-- ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * * *
13408 ATAC ATAC ATGC ATGC ATGC ATGC ATGC ATGC ATGC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
13456 ATAC ATAC ATAC ATGC ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
13504 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
13552 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * **
13600 ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATGC ATGG ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
13648 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
13696 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
13744 ATAC ATAC ATAC ATAC ATAT ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
13792 ATAC ATAC ATAC ATAC ATAC ATAT ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
13840 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATCC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
13888 ATAC ATCC ATAC ATCC ATAC ATCC ATAC ATCC ATAC ATCC ATAC ATCC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
13936 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
13984 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
14032 ATAC ATGC ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
14080 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
14128 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
14176 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
14224 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
14272 ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
14320 ATAC ATAC ATAC ATAC ATGC ATGC ATAC ATGC ATGC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
14368 ATAC ATGC ATAC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
14416 ATAC ATGC ATAC ATGC ATAC ATGC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
14446 CCAAGATAGT
Statistics
Matches: 11909, Mismatches: 1391, Indels: 278
0.88 0.10 0.02
Matches are distributed among these distances:
2 46 0.00
3 161 0.01
4 11624 0.98
5 42 0.00
6 36 0.00
ACGTcount: A:0.43, C:0.25, G:0.06, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:15005 original size:109 final size:104
Alignment explanation
Indices: 14859--15106 Score: 267
Period size: 106 Copynumber: 2.3 Consensus size: 104
14849 ATTTAAGACA
* * * *
14859 ATTTCTGTT-AAAACAAACTTCGTCTTGCTTCAGACATTTTTTTTCCTTTG-ATATAAAAATTTT
1 ATTTCT-TTCAAAACAAATTTCGTCTCGCTTGAGACA---TTTTTCCTTTGTA-ATAAAAATTTC
*
14922 GAATTTGATTCAC-TTGAAACAAAAATTAATCTCACTTGAGATTGTT
61 GAATTTGATTCACATT-AAAC-AAAATTAATCTCACTTGAGATCG-T
* *
14968 ATTTCTTTCAAAACAAATTTCGTCTCGTTTGAGACATTTTTCCTTTGTGAATACAAATTTCGAAT
1 ATTTCTTTCAAAACAAATTTCGTCTCGCTTGAGACATTTTTCCTTTGT-AATAAAAATTTCGAAT
* *
15033 TTGTTTCACATTAAACAAAGTTAATCTCACTTGAGATCGT
65 TTGATTCACATTAAACAAAATTAATCTCACTTGAGATCGT
15073 -TTTC--TCAAAAACAAACTTT-GTCTCGCTTGAGACA
1 ATTTCTTTC-AAAACAAA-TTTCGTCTCGCTTGAGACA
15107 ATTTCTCTAA
Statistics
Matches: 123, Mismatches: 10, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
102 2 0.02
103 22 0.18
104 7 0.06
105 1 0.01
106 32 0.26
107 25 0.20
108 5 0.04
109 29 0.24
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.41
Consensus pattern (104 bp):
ATTTCTTTCAAAACAAATTTCGTCTCGCTTGAGACATTTTTCCTTTGTAATAAAAATTTCGAATT
TGATTCACATTAAACAAAATTAATCTCACTTGAGATCGT
Found at i:15102 original size:36 final size:35
Alignment explanation
Indices: 15057--15178 Score: 147
Period size: 36 Copynumber: 3.4 Consensus size: 35
15047 ACAAAGTTAA
**
15057 TCTCACTTGAGATCGTTTTCTC-AAAAACAAACTTTG
1 TCTCACTTGAGA-CAATTTCTCTAAAAACAAA-TTTG
* *
15093 TCTCGCTTGAGACAATTTCTCTAAAAACAATTTTTG
1 TCTCACTTGAGACAATTTCTCTAAAAACAA-ATTTG
**
15129 TCTCGTTTGAGACAATTTCTCTAAAAACAAATGTTG
1 TCTCACTTGAGACAATTTCTCTAAAAACAAAT-TTG
15165 TCTCACTTGAGACA
1 TCTCACTTGAGACA
15179 TTTTTCCAAA
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
35 8 0.11
36 67 0.89
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.36
Consensus pattern (35 bp):
TCTCACTTGAGACAATTTCTCTAAAAACAAATTTG
Found at i:15654 original size:32 final size:30
Alignment explanation
Indices: 15594--15668 Score: 98
Period size: 31 Copynumber: 2.4 Consensus size: 30
15584 TCTTGAGGCA
*
15594 GTTTCTCTAGAAATACAAAATCTTTGAGTTT
1 GTTTCTCTTGAAATACAAAATCTTTGAG-TT
15625 GTTTCTCTTGAAATA-AAACCATCTTTGAGTT
1 GTTTCTCTTGAAATACAAA--ATCTTTGAGTT
*
15656 GTTTCCCTTGAAA
1 GTTTCTCTTGAAA
15669 AGAATTTTGA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
30 3 0.08
31 28 0.70
32 9 0.22
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.41
Consensus pattern (30 bp):
GTTTCTCTTGAAATACAAAATCTTTGAGTT
Found at i:15727 original size:32 final size:32
Alignment explanation
Indices: 15613--15738 Score: 87
Period size: 32 Copynumber: 3.9 Consensus size: 32
15603 GAAATACAAA
* * * *
15613 ATCTTTGAGTTTGTTTCTCTTGAAATAAAACC
1 ATCTTTGAGTTTGTTTCTCTTAAAACAAGATC
* * ** *
15645 ATCTTTGAG-TTGTTTCCCTTGAAAAGAATTTTG
1 ATCTTTGAGTTTGTTTCTCTT-AAAACAA-GATC
*
15678 A-CTCTTGAGATAT-TTTCTCTTAAAACAAGATC
1 ATCT-TTGAG-TTTGTTTCTCTTAAAACAAGATC
**
15710 ATCTTTGAGTTTGTTTCTCTGGAAACAAG
1 ATCTTTGAGTTTGTTTCTCTTAAAACAAG
15739 GTTTTATCCC
Statistics
Matches: 71, Mismatches: 16, Indels: 14
0.70 0.16 0.14
Matches are distributed among these distances:
31 12 0.17
32 37 0.52
33 14 0.20
34 7 0.10
35 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (32 bp):
ATCTTTGAGTTTGTTTCTCTTAAAACAAGATC
Found at i:15893 original size:63 final size:64
Alignment explanation
Indices: 15826--15958 Score: 160
Period size: 63 Copynumber: 2.1 Consensus size: 64
15816 TAGATACAAT
* *
15826 TTTCTGAAAAAACAAAGTTTTGTCTCTCTTGAGACAATTTCTTTT-GAAAAATCATTGAATATG
1 TTTCTGAAAAAACAAAATTTTGTCTCTCTTGAGACAACTTCTTTTAGAAAAATCATTGAATATG
**** * * * *
15889 TTTCTTTGGAAACAAAATTTTGTCTCTTTTGAGACAACTTCTTTTAAGAAAAATCTTTGAGTCTG
1 TTTCTGAAAAAACAAAATTTTGTCTCTCTTGAGACAACTTCTTTT-AGAAAAATCATTGAATATG
15954 TTTCT
1 TTTCT
15959 TTGGAAACAA
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
63 38 0.66
65 20 0.34
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.43
Consensus pattern (64 bp):
TTTCTGAAAAAACAAAATTTTGTCTCTCTTGAGACAACTTCTTTTAGAAAAATCATTGAATATG
Found at i:15969 original size:65 final size:63
Alignment explanation
Indices: 15835--15973 Score: 206
Period size: 65 Copynumber: 2.2 Consensus size: 63
15825 TTTTCTGAAA
* *
15835 AAACAAAGTTTTGTCTCTCTTGAGACAATTTCTTTTGAAAAATCATTGAATATGTTTCTTTGG
1 AAACAAAATTTTGTCTCTCTTGAGACAACTTCTTTTGAAAAATCATTGAATATGTTTCTTTGG
* * * *
15898 AAACAAAATTTTGTCTCTTTTGAGACAACTTCTTTTAAGAAAAATCTTTGAGTCTGTTTCTTTGG
1 AAACAAAATTTTGTCTCTCTTGAGACAACTTCTTTT--GAAAAATCATTGAATATGTTTCTTTGG
15963 AAACAAAATTT
1 AAACAAAATTT
15974 ACCATCTTTG
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
63 33 0.49
65 35 0.51
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (63 bp):
AAACAAAATTTTGTCTCTCTTGAGACAACTTCTTTTGAAAAATCATTGAATATGTTTCTTTGG
Found at i:16059 original size:32 final size:33
Alignment explanation
Indices: 16005--16074 Score: 97
Period size: 32 Copynumber: 2.2 Consensus size: 33
15995 CTTGAAAAAC
* * *
16005 AAACAAACAAAATCTTTGAGTTTGTTTTTCTTG
1 AAACAAACAAAATCTTTAAGTTTGTTTCTCTCG
*
16038 AAACAAA-AACATCTTTAAGTTTGTTTCTCTCG
1 AAACAAACAAAATCTTTAAGTTTGTTTCTCTCG
16070 AAACA
1 AAACA
16075 CCAATCTTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
32 26 0.79
33 7 0.21
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (33 bp):
AAACAAACAAAATCTTTAAGTTTGTTTCTCTCG
Found at i:16408 original size:28 final size:28
Alignment explanation
Indices: 16376--16469 Score: 129
Period size: 28 Copynumber: 3.4 Consensus size: 28
16366 AAAACACATC
16376 ATCTTTGAGTTTGTTTTTCTTGAAACAA
1 ATCTTTGAGTTTGTTTTTCTTGAAACAA
*
16404 ATCTTTGAGTTTATTTTTCTTGAAACAA
1 ATCTTTGAGTTTGTTTTTCTTGAAACAA
**
16432 ATCTTTGA-TTCTGTTTCTT-TTGAAACTT
1 ATCTTTGAGTT-TGTTT-TTCTTGAAACAA
16460 ATCTTTGAGT
1 ATCTTTGAGT
16470 CGGTTTCTTT
Statistics
Matches: 59, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
27 2 0.03
28 54 0.92
29 3 0.05
ACGTcount: A:0.23, C:0.12, G:0.13, T:0.52
Consensus pattern (28 bp):
ATCTTTGAGTTTGTTTTTCTTGAAACAA
Found at i:16475 original size:28 final size:28
Alignment explanation
Indices: 16376--16484 Score: 105
Period size: 28 Copynumber: 3.9 Consensus size: 28
16366 AAAACACATC
**
16376 ATCTTTGAGTTTGTTT-TTCTTGAAACAA
1 ATCTTTGAGTCGGTTTCTT-TTGAAACAA
***
16404 ATCTTTGAGTTTATTT-TTCTTGAAACAA
1 ATCTTTGAGTCGGTTTCTT-TTGAAACAA
* * **
16432 ATCTTTGATTCTGTTTCTTTTGAAACTT
1 ATCTTTGAGTCGGTTTCTTTTGAAACAA
16460 ATCTTTGAGTCGGTTTCTTTTGAAA
1 ATCTTTGAGTCGGTTTCTTTTGAAA
16485 TCATTATCCC
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
28 70 0.97
29 2 0.03
ACGTcount: A:0.23, C:0.12, G:0.14, T:0.51
Consensus pattern (28 bp):
ATCTTTGAGTCGGTTTCTTTTGAAACAA
Found at i:16483 original size:56 final size:56
Alignment explanation
Indices: 16376--16484 Score: 125
Period size: 56 Copynumber: 1.9 Consensus size: 56
16366 AAAACACATC
**
16376 ATCTTTGAGTTTGTTTTTCTTGAAACAAATCTTTGAGTTTATTTTTCTTGAAACAA
1 ATCTTTGAGTTTGTTTTTCTTGAAACAAATCTTTGAGTCGATTTTTCTTGAAACAA
** *
16432 ATCTTTGA-TTCTGTTTCTT-TTGAAACTTATCTTTGAGTCGGTTTCTT-TTGAAA
1 ATCTTTGAGTT-TGTTT-TTCTTGAAACAAATCTTTGAGTCGATTT-TTCTTGAAA
16485 TCATTATCCC
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
55 2 0.04
56 39 0.87
57 4 0.09
ACGTcount: A:0.23, C:0.12, G:0.14, T:0.51
Consensus pattern (56 bp):
ATCTTTGAGTTTGTTTTTCTTGAAACAAATCTTTGAGTCGATTTTTCTTGAAACAA
Found at i:16742 original size:134 final size:133
Alignment explanation
Indices: 16493--16844 Score: 506
Period size: 134 Copynumber: 2.6 Consensus size: 133
16483 AATCATTATC
* * *
16493 CCTAAAGATGGCCAGAACTCTTCATCACGTATTAGTCGTGTCATCCCCCGACCAGATGTCTTTAT
1 CCTAAAGAT-GCCAGAACTCTTCATCACGTATGAGTCGTGTCATCCCCCGACCAGATCTCTTCAT
* * * * *
16558 CACGTAGGAGTCGTGTCACCCTTAGATAACCAGTCGTCCTCATCGTGTAGGAACTGAGTTATCAC
65 CACGTAGGAGCCGTGTCACCCCTAGATAACCAGTCGTCCTCACCGCGTAGGAACCGAGTTATCAC
16623 CCTT
130 CCTT
* *
16627 CCTAAAGATAGCCATAACTCTTCATCACGTATGAGTCGTGTCATCCCCTGACCAGATCTCTTCAT
1 CCTAAAGAT-GCCAGAACTCTTCATCACGTATGAGTCGTGTCATCCCCCGACCAGATCTCTTCAT
* *
16692 CACGTATGAGCCGTGTCACCCCTAGATAACCAGTCGTTCTCACCGCGTAGGAACCGAGTTATCAC
65 CACGTAGGAGCCGTGTCACCCCTAGATAACCAGTCGTCCTCACCGCGTAGGAACCGAGTTATCAC
16757 CCTT
130 CCTT
* * * * * *
16761 CCTAAAGATGCCCAGAATTCTTCATCATGTATGAGCCGTGTCATCCCCCGACCAAATTTCCTCAT
1 CCTAAAGATG-CCAGAACTCTTCATCACGTATGAGTCGTGTCATCCCCCGACCAGATCTCTTCAT
*
16826 CACGTAGGAACCGTGTCAC
65 CACGTAGGAGCCGTGTCAC
16845 TCTTAAACGA
Statistics
Matches: 194, Mismatches: 23, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
133 1 0.01
134 193 0.99
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.27
Consensus pattern (133 bp):
CCTAAAGATGCCAGAACTCTTCATCACGTATGAGTCGTGTCATCCCCCGACCAGATCTCTTCATC
ACGTAGGAGCCGTGTCACCCCTAGATAACCAGTCGTCCTCACCGCGTAGGAACCGAGTTATCACC
CTT
Found at i:17071 original size:18 final size:18
Alignment explanation
Indices: 17038--17085 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
17028 GGTCTTCTTT
17038 TTATTATTTAATATTATTA
1 TTATTATTT-ATATTATTA
*
17057 TTATTATTTATATTATTG
1 TTATTATTTATATTATTA
*
17075 TTATTAATTAT
1 TTATTATTTAT
17086 TTTGTTACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 18 0.67
19 9 0.33
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (18 bp):
TTATTATTTATATTATTA
Found at i:25480 original size:2 final size:2
Alignment explanation
Indices: 25469--25510 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
25459 AAAAGGAAAA
*
25469 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25511 CAAAGTATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:25927 original size:2 final size:2
Alignment explanation
Indices: 25920--25944 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
25910 TATTAAAGAA
25920 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
25945 AAATAGTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26502 original size:34 final size:34
Alignment explanation
Indices: 26448--26516 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
26438 GAATCCTAGC
26448 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
1 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
* * *
26482 AAAATTTTATCCTATTTTTAGGAGTTTGAATCCT
1 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
26516 A
1 A
26517 GTAGGACGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.32, C:0.13, G:0.12, T:0.43
Consensus pattern (34 bp):
AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
Found at i:27336 original size:109 final size:104
Alignment explanation
Indices: 27091--27704 Score: 588
Period size: 109 Copynumber: 5.8 Consensus size: 104
27081 GAACGAAATC
*
27091 TTGTTGACAATCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT-CCAATATCC
1 TTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGCCAATATCC
* * * * *
27155 TTCGC-TGCGAAGTTGAAATTGGCTCTGAAATTTGAAAAATG
66 TCCGCGTG-G-AGTTGAAATCGGCGCTGAAA-CTGAAAATTG
* *
27196 TTTGTTGACAACCAGTCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGGCACGATA
1 -TTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT-GC-CAATA
* *
27261 TCCTCCGTCGTGGAGTTAAAATC-GCGGATGAAACTGAAAAGTTG
63 TCCTCCG-CGTGGAGTTGAAATCGGC-GCTGAAACTGAAAA-TTG
* *
27305 TTCGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGGGTAGCACGATA
1 TT-GTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT-GC-CAATA
* * * * *
27370 TCCTCTGTCGTGGAGTTGAAATCGGCTCTGGAATTAGGAAATTG
63 TCCTCCG-CGTGGAGTTGAAATCGGCGCTGAAACT-GAAAATTG
*
27414 TTTGTTGACAACCAGCCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGT-CCAATATC
1 -TTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGCCAATATC
* * * * * *
27478 CTTCGCTTTGAAGTTGAGAT-TG-GCT----CCG-AAATTG
65 CTCCGC-GTGGAGTTGAAATCGGCGCTGAAACTGAAAATTG
* ** * * * * * *
27512 CTT-TCGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTTGGGT-CCAATATC
1 -TTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGCCAATATC
* * * * * *
27575 CTTCGCTGTGAAGTTGAAATTGGCCCTGAAACTAGGAAATTA
65 CTCCGC-GTGGAGTTGAAATCGGCGCTGAAACT-GAAAATTG
27617 TTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGCCACGATAT
1 TTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGCCA--ATAT
27682 CCTCCGTCGTGGAGTTGAAATCG
64 CCTCCG-CGTGGAGTTGAAATCG
27705 CAGATGGCCC
Statistics
Matches: 424, Mismatches: 59, Indels: 48
0.80 0.11 0.09
Matches are distributed among these distances:
97 70 0.17
98 9 0.02
99 3 0.01
103 1 0.00
104 5 0.01
105 50 0.12
106 75 0.18
107 1 0.00
108 33 0.08
109 165 0.39
110 10 0.02
111 2 0.00
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.32
Consensus pattern (104 bp):
TTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGCCAATATCC
TCCGCGTGGAGTTGAAATCGGCGCTGAAACTGAAAATTG
Found at i:28396 original size:68 final size:65
Alignment explanation
Indices: 28306--28463 Score: 208
Period size: 68 Copynumber: 2.4 Consensus size: 65
28296 AAGATATCTG
* * **
28306 TTGTTTCATGAGAAACGGTCTCAAGGGAAACAAAATTATGTTTTAAGGGAAATAAATTTGAAGAT
1 TTGTTTCAAGAGAAACTGTCTCAAGGGAAACAAAATT-TGTTTTAAGGGAAATAAATTCAAAGA-
28371 TT
64 TT
* * * *
28373 TGTGTTTCAAGAGTAATTGTCTCAAGGGAGACAAAATTTGTTTTAGGGGAAATAAATTCAAAGAT
1 T-TGTTTCAAGAGAAACTGTCTCAAGGGAAACAAAATTTGTTTTAAGGGAAATAAATTCAAAGAT
28438 T
65 T
*
28439 TTGTTTCAAGGGAAACTGTCTCAAG
1 TTGTTTCAAGAGAAACTGTCTCAAG
28464 ATAGACGAAA
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
65 21 0.27
66 3 0.04
67 24 0.30
68 31 0.39
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.33
Consensus pattern (65 bp):
TTGTTTCAAGAGAAACTGTCTCAAGGGAAACAAAATTTGTTTTAAGGGAAATAAATTCAAAGATT
Found at i:28439 original size:67 final size:65
Alignment explanation
Indices: 28306--28489 Score: 208
Period size: 65 Copynumber: 2.8 Consensus size: 65
28296 AAGATATCTG
* * * **
28306 TTGTTTCATGAGAAACGGTCTCAAGGGAAACAAAATTATGTTTTAAGGGAAATAAATTTGAAGAT
1 TTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATT-TGTTTTAAGGGAAATAAATTCAAAGA-
28371 TT
64 TT
* * *
28373 TGTGTTTCAAGAGTAATTGTCTCAAGGGAGACAAAATTTGTTTTAGGGGAAATAAATTCAAAGAT
1 T-TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTTAAGGGAAATAAATTCAAAGAT
28438 T
65 T
* ** * *
28439 TTGTTTCAAGGGAAACTGTCTCAAGATAGACGAAAA-TTGTTTCAAGAGAAA
1 TTGTTTCAAGAGAAACTGTCTCAAGGGAGAC-AAAATTTGTTTTAAGGGAAA
28490 CTGTCTCAAG
Statistics
Matches: 99, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
65 37 0.37
66 7 0.07
67 24 0.24
68 31 0.31
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.32
Consensus pattern (65 bp):
TTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTTAAGGGAAATAAATTCAAAGATT
Found at i:28490 original size:36 final size:36
Alignment explanation
Indices: 28439--28534 Score: 122
Period size: 36 Copynumber: 2.6 Consensus size: 36
28429 TTCAAAGATT
* *
28439 TTGTTTCAAGGGAAACTGTCTCAAGATAGACGAAAA-
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGAC-AAAAC
28475 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAAC
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAAC
* * *
28511 TTAGTTCCAAAAGAAATTGTCTCA
1 TT-GTTTCAAGAGAAACTGTCTCA
28535 CGGGGAGATG
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
35 4 0.08
36 31 0.58
37 18 0.34
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.26
Consensus pattern (36 bp):
TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAAC
Found at i:28748 original size:67 final size:67
Alignment explanation
Indices: 28668--28826 Score: 232
Period size: 67 Copynumber: 2.4 Consensus size: 67
28658 GAAACGAAAT
* *
28668 TTTGTTTTAAGGGAGATA-AAT-TCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCATGGGAGAC
1 TTTGTTTCAAGGGA-A-ACAATCTCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGAC
28731 AAAA
64 AAAA
* *
28735 TTTGTTTCGAGGGAAACAATCTCAAAGGTTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAA
1 TTTGTTTCAAGGGAAACAATCTCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAA
28800 AA
66 AA
**
28802 TTTGTTTCAAGGGAAATTATCTCAA
1 TTTGTTTCAAGGGAAACAATCTCAA
28827 GAGAGACGAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
65 1 0.01
66 4 0.05
67 78 0.94
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.32
Consensus pattern (67 bp):
TTTGTTTCAAGGGAAACAATCTCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAA
AA
Found at i:28825 original size:36 final size:36
Alignment explanation
Indices: 28701--29075 Score: 222
Period size: 36 Copynumber: 10.9 Consensus size: 36
28691 AAAGATTTTG
* * *
28701 TGTTTCAAGAGAAACTGTCTCATGGGAGACAAAATT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
* ** **
28737 TGTTTCGAGGGAAACAATCTCAA-AG-G----TTTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
* *
28767 GTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATT
1 -TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
* * *
28804 TGTTTCAAGGGAAATTATCTCAAGAGAGACGAAATT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
** * * *
28840 CATTTCAAGGGAAA-TGTTTTC-A-A-TG-----TTT
1 TGTTTCAAGGGAAACTG-TCTCAAGAGAGACAAAATT
*
28868 ATGTTTC-AGGAGAAACTGTCTCAAGGGAGACAAAATTT
1 -TGTTTCAAGG-GAAACTGTCTCAAGAGAGACAAAA-TT
*
28906 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
** * * * *
28942 CATTTCAAGGGAAA-TGTTTCCA-A-TG-----TTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
* * *
28970 ATGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
1 -TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA-TT
* *
29008 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAACT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
**
29044 CATTTCAAGGGAAACTGTCTCAAGAGAGACAA
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
29076 TGGTGAGCAC
Statistics
Matches: 251, Mismatches: 57, Indels: 62
0.68 0.15 0.17
Matches are distributed among these distances:
28 7 0.03
29 22 0.09
30 11 0.04
31 19 0.08
32 3 0.01
33 3 0.01
34 3 0.01
35 8 0.03
36 108 0.43
37 60 0.24
38 7 0.03
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28
Consensus pattern (36 bp):
TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
Found at i:28920 original size:37 final size:37
Alignment explanation
Indices: 28869--29075 Score: 186
Period size: 37 Copynumber: 5.9 Consensus size: 37
28859 TCAATGTTTA
*
28869 TGTTTC-AGGAGAAACTGTCTCAAGGGAGACAAAATTT
1 TGTTTCAAGG-GAAACTGTCTCAAGAGAGACAAAATTT
*
28906 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAA-TT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
** * **
28942 CATTTCAAGGGAAA-TGTTTC--------CAATGTTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
* * *
28970 ATGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
1 -TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
* *
29008 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAA-CT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
**
29044 CATTTCAAGGGAAACTGTCTCAAGAGAGACAA
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
29076 TGGTGAGCAC
Statistics
Matches: 135, Mismatches: 23, Indels: 25
0.74 0.13 0.14
Matches are distributed among these distances:
27 3 0.02
28 2 0.01
29 11 0.08
30 5 0.04
35 4 0.03
36 44 0.33
37 58 0.43
38 8 0.06
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (37 bp):
TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
Found at i:28941 original size:102 final size:102
Alignment explanation
Indices: 28768--29057 Score: 519
Period size: 102 Copynumber: 2.9 Consensus size: 102
28758 AAAGGTTTTG
*
28768 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAA-TTTGTTTCAAGGGAAATTATCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
* *
28832 ACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
66 ACAAAATTCATTTCAAGGGAAATGTTTCCAATGTTTA
*
28869 TGTTTCAGGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
28934 ACAAAATTCATTTCAAGGGAAATGTTTCCAATGTTTA
66 ACAAAATTCATTTCAAGGGAAATGTTTCCAATGTTTA
*
28971 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
*
29036 ACAAAACTCATTTCAAGGGAAA
66 ACAAAATTCATTTCAAGGGAAA
29058 CTGTCTCAAG
Statistics
Matches: 181, Mismatches: 7, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
101 33 0.18
102 148 0.82
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (102 bp):
TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
ACAAAATTCATTTCAAGGGAAATGTTTCCAATGTTTA
Found at i:29961 original size:22 final size:22
Alignment explanation
Indices: 29936--29984 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
29926 TTGTGTTTGG
29936 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
*
29958 TCAAAGGTTTGGTATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
29980 TCAAA
1 TCAAA
29985 AGATTGATGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.37
Consensus pattern (22 bp):
TCAAAGGTTTGGCATTTGATGC
Found at i:30630 original size:20 final size:22
Alignment explanation
Indices: 30607--30657 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
30597 TTTTTTAATT
30607 TTGTTCTTT-CTTTTTTG-TTC
1 TTGTTCTTTCCTTTTTTGCTTC
*
30627 TTGTTTTTTTCCTTTTTTGCTTC
1 TTG-TTCTTTCCTTTTTTGCTTC
30650 TT-TTCTTT
1 TTGTTCTTT
30658 TTTCTTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 3 0.12
21 10 0.38
22 8 0.31
23 5 0.19
ACGTcount: A:0.00, C:0.16, G:0.08, T:0.76
Consensus pattern (22 bp):
TTGTTCTTTCCTTTTTTGCTTC
Found at i:30668 original size:22 final size:23
Alignment explanation
Indices: 30613--30666 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
30603 AATTTTGTTC
30613 TTTCTTTTTTG-TTCTTGTTTTT
1 TTTCTTTTTTGCTTCTTGTTTTT
*
30635 TTCCTTTTTTGCTTCTT-TTCTTT
1 TTTCTTTTTTGCTTCTTGTT-TTT
30658 TTTCTTTTT
1 TTTCTTTTT
30667 GCCCTTTTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 12 0.43
23 16 0.57
ACGTcount: A:0.00, C:0.15, G:0.06, T:0.80
Consensus pattern (23 bp):
TTTCTTTTTTGCTTCTTGTTTTT
Found at i:33768 original size:2 final size:2
Alignment explanation
Indices: 33757--33800 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
33747 AAAAGGAAAA
*
33757 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33799 AT
1 AT
33801 CAAAGTATTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:34068 original size:20 final size:19
Alignment explanation
Indices: 34018--34068 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
34008 AAAACGAAAT
*
34018 AATAAAAAATATATATATA
1 AATAAAAAATATATACATA
* *
34037 AGATATAAAATATATACGTA
1 A-ATAAAAAATATATACATA
34057 AATAAAAGAATA
1 AATAAAA-AATA
34069 ATCAAATAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 6 0.23
20 20 0.77
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (19 bp):
AATAAAAAATATATACATA
Found at i:34214 original size:2 final size:2
Alignment explanation
Indices: 34207--34237 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
34197 ATATTAAGAA
34207 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
34238 ATAGTAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:34311 original size:18 final size:18
Alignment explanation
Indices: 34288--34330 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
34278 TATATTATAT
34288 ATAATAATAA-TAACATGA
1 ATAATAATAATTAA-ATGA
34306 ATAATAA-AATTAAATGA
1 ATAATAATAATTAAATGA
34323 ATAA-AATA
1 ATAATAATA
34331 TCCATATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 2 0.09
17 11 0.48
18 10 0.43
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (18 bp):
ATAATAATAATTAAATGA
Found at i:34787 original size:34 final size:34
Alignment explanation
Indices: 34744--34812 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
34734 GAATCCTAGC
34744 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
1 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
* *
34778 AAAATTCTATCCTATTTTTAGGAGTTTGAATCCT
1 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
34812 A
1 A
34813 GTAGAACGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (34 bp):
AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
Found at i:36516 original size:16 final size:16
Alignment explanation
Indices: 36497--36549 Score: 55
Period size: 17 Copynumber: 3.6 Consensus size: 16
36487 TTAAAATTTA
36497 ATAAATTTATCTTAGT
1 ATAAATTTATCTTAGT
36513 ATAAA---AT-TTA--
1 ATAAATTTATCTTAGT
36523 ATAAATTTATCTTAGT
1 ATAAATTTATCTTAGT
36539 ATAAAATTTAT
1 AT-AAATTTAT
36550 TCACTCCTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 13
0.70 0.00 0.30
Matches are distributed among these distances:
10 5 0.17
12 3 0.10
13 4 0.13
14 3 0.10
16 7 0.23
17 8 0.27
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (16 bp):
ATAAATTTATCTTAGT
Found at i:36518 original size:26 final size:26
Alignment explanation
Indices: 36488--36548 Score: 122
Period size: 26 Copynumber: 2.3 Consensus size: 26
36478 TAGTTATTTT
36488 TAAAATTTAATAAATTTATCTTAGTA
1 TAAAATTTAATAAATTTATCTTAGTA
36514 TAAAATTTAATAAATTTATCTTAGTA
1 TAAAATTTAATAAATTTATCTTAGTA
36540 TAAAATTTA
1 TAAAATTTA
36549 TTCACTCCTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (26 bp):
TAAAATTTAATAAATTTATCTTAGTA
Found at i:37436 original size:2 final size:2
Alignment explanation
Indices: 37429--37454 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
37419 AAATAATTTA
37429 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
37455 TATCATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:38142 original size:33 final size:33
Alignment explanation
Indices: 38032--38345 Score: 215
Period size: 33 Copynumber: 9.6 Consensus size: 33
38022 TTTGAAAATA
* * * *
38032 TTTTAAAAACATATAATATATGGTTTTGAAAACAT
1 TTTTGAAAATATAT-ATATAT-ATTTTTAAAACAT
* * *
38067 GTTTGAAACATTATATATTATATAGTTTTTAAAAAAA
1 TTTTGAAA-A-TATATA-TATATA-TTTTTAAAACAT
* *
38104 ATTTGAAAATAAATATATATATTTTTAAAACAT
1 TTTTGAAAATATATATATATATTTTTAAAACAT
*
38137 TTTTGAAAATATATATAT-TGTTTTTAAAACA-
1 TTTTGAAAATATATATATATATTTTTAAAACAT
* *
38168 TTTTG--AA-A-ATATATA-GTTTTAAAAACA-
1 TTTTGAAAATATATATATATATTTTTAAAACAT
* *
38195 TTTTGAAACATATAT-TATATAATTTTGAAATCA-
1 TTTTGAAA-ATATATATATAT-ATTTTTAAAACAT
*
38228 TTTTGAAAATTATATAGTATATAGTTTTAAAAACAT
1 TTTTGAAAA-TATATA-TATATA-TTTTTAAAACAT
* *
38264 TTTTG-AAA-A-CTATATA-ATTTTGAAAACAT
1 TTTTGAAAATATATATATATATTTTTAAAACAT
** * * *
38293 TTTAAAAAATATATAATATATAATTTTAAAATAC
1 TTTTGAAAATATAT-ATATATATTTTTAAAACAT
*
38327 TTTTGAAAATATATTTATA
1 TTTTGAAAATATATATATA
38346 GGTTTTGAAA
Statistics
Matches: 225, Mismatches: 32, Indels: 46
0.74 0.11 0.15
Matches are distributed among these distances:
27 22 0.10
28 1 0.00
29 17 0.08
30 5 0.02
31 15 0.07
32 18 0.08
33 58 0.26
34 28 0.12
35 28 0.12
36 8 0.04
37 25 0.11
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (33 bp):
TTTTGAAAATATATATATATATTTTTAAAACAT
Found at i:38187 original size:27 final size:28
Alignment explanation
Indices: 38118--38209 Score: 116
Period size: 27 Copynumber: 3.2 Consensus size: 28
38108 GAAAATAAAT
*
38118 ATATATA-TTTTTAAAACATTTTTGAAAAT
1 ATATATAGTTTTTAAAACA-TTTTG-AAAC
38147 ATATATATTGTTTTTAAAACATTTTGAAA-
1 ATATATA--GTTTTTAAAACATTTTGAAAC
*
38176 ATATATAGTTTTAAAAACATTTTGAAAC
1 ATATATAGTTTTTAAAACATTTTGAAAC
38204 ATATAT
1 ATATAT
38210 TATATAATTT
Statistics
Matches: 58, Mismatches: 1, Indels: 9
0.85 0.01 0.13
Matches are distributed among these distances:
27 19 0.33
28 6 0.10
29 14 0.24
30 3 0.05
31 5 0.09
32 11 0.19
ACGTcount: A:0.45, C:0.04, G:0.05, T:0.46
Consensus pattern (28 bp):
ATATATAGTTTTTAAAACATTTTGAAAC
Found at i:38230 original size:60 final size:59
Alignment explanation
Indices: 38118--38307 Score: 183
Period size: 64 Copynumber: 3.1 Consensus size: 59
38108 GAAAATAAAT
* ** *
38118 ATATATA-TTTTTAAAACATTTTTGAAAATATATATATTGTTTTTAAAACATTTTGAAA
1 ATATATAGTTTTAAAAACATTTTTGAAAATATATATATAATTTTGAAAACATTTTGAAA
*
38176 ATATATAGTTTTAAAAACA-TTTTGAAACATATATTATATAATTTTGAAATCATTTTGAAAATTA
1 ATATATAGTTTTAAAAACATTTTTGAAA-ATATA-TATATAATTTTGAAAACATTTTG---A--A
38240 TA
59 -A
* *
38242 TAGTATATAGTTTTAAAAACATTTTTG-AAA-A-CTATATAATTTTGAAAACATTTTAAAAA
1 -A-TATATAGTTTTAAAAACATTTTTGAAAATATATATATAATTTTGAAAACATTTT-GAAA
38301 ATATATA
1 ATATATA
38308 ATATATAATT
Statistics
Matches: 111, Mismatches: 8, Indels: 27
0.76 0.05 0.18
Matches are distributed among these distances:
57 6 0.05
58 16 0.14
59 16 0.14
60 20 0.18
62 1 0.01
63 1 0.01
64 21 0.19
65 1 0.01
66 2 0.02
67 2 0.02
68 20 0.18
69 5 0.05
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (59 bp):
ATATATAGTTTTAAAAACATTTTTGAAAATATATATATAATTTTGAAAACATTTTGAAA
Found at i:38243 original size:35 final size:34
Alignment explanation
Indices: 38177--38345 Score: 149
Period size: 35 Copynumber: 5.1 Consensus size: 34
38167 ATTTTGAAAA
* *
38177 TATATAGTTTTAAAAACATTTTG-AAACATATAT
1 TATATAATTTTAAAAACATTTTGAAAATATATAT
* * *
38210 TATATAATTTTGAAATCATTTTGAAAATTATATAG
1 TATATAATTTTAAAAACATTTTGAAAA-TATATAT
* *
38245 TATATAGTTTTAAAAACATTTTTG---A-A-A-AC
1 TATATAATTTTAAAAACA-TTTTGAAAATATATAT
* * *
38274 TATATAATTTTGAAAACATTTTAAAAAATATATAA
1 TATATAATTTTAAAAACATTTT-GAAAATATATAT
38309 TATATAATTTTAAAATAC-TTTTGAAAATATAT-T
1 TATATAATTTTAAAA-ACATTTTGAAAATATATAT
38342 TATA
1 TATA
38346 GGTTTTGAAA
Statistics
Matches: 109, Mismatches: 16, Indels: 22
0.74 0.11 0.15
Matches are distributed among these distances:
28 4 0.04
29 17 0.16
30 1 0.01
31 1 0.01
32 1 0.01
33 26 0.24
34 13 0.12
35 39 0.36
36 7 0.06
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.44
Consensus pattern (34 bp):
TATATAATTTTAAAAACATTTTGAAAATATATAT
Found at i:38305 original size:97 final size:95
Alignment explanation
Indices: 38109--38364 Score: 294
Period size: 97 Copynumber: 2.7 Consensus size: 95
38099 AAAAAATTTG
* * * *
38109 AAAATAAATATATATATTTTTAAAA-CATTTTTGAAAATATATATAT-T-GTTTTTAAAACA-TT
1 AAAATATAT-TATATAATTTTAAAATCACTTTTGAAAATATATATATATAGTTTTAAAAACATTT
* *
38170 TTGAAAATATATAGTTTTAAAAACATTTTGA
65 TTGAAAATATATAATTTTAAAAACATTTTAA
* *
38201 AACATATATTATATAATTTTGAAATCA-TTTTGAAAATTATATAGTATATAGTTTTAAAAACATT
1 AAAATATATTATATAATTTTAAAATCACTTTTGAAAA-TATATA-TATATAGTTTTAAAAACATT
*
38265 TTTGAAAACTATATAATTTTGAAAACATTTTAA
64 TTTGAAAA-TATATAATTTTAAAAACATTTTAA
*
38298 AAAATATATAATATATAATTTTAAAAT-ACTTTTGAAAATATAT-T-TATAGGTTTTGAAAAATA
1 AAAATATAT--TATATAATTTTAAAATCACTTTTGAAAATATATATATATA-GTTTT-AAAAACA
38360 TTTTT
62 TTTTT
38365 TATATATTAT
Statistics
Matches: 141, Mismatches: 11, Indels: 19
0.82 0.06 0.11
Matches are distributed among these distances:
91 22 0.16
92 15 0.11
93 3 0.02
94 1 0.01
95 15 0.11
96 15 0.11
97 40 0.28
98 6 0.04
99 24 0.17
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.45
Consensus pattern (95 bp):
AAAATATATTATATAATTTTAAAATCACTTTTGAAAATATATATATATAGTTTTAAAAACATTTT
TGAAAATATATAATTTTAAAAACATTTTAA
Found at i:38306 original size:64 final size:62
Alignment explanation
Indices: 38175--38340 Score: 199
Period size: 64 Copynumber: 2.5 Consensus size: 62
38165 ACATTTTGAA
* * *
38175 AATATATAGTTTTAAAAACATTTTGAAACATATATTATATAATTTTGAAATCATTTTGAAAATTA
1 AATATATAGTTTTAAAAACATTTTG--A-A-A-A-TATATAATTTTGAAAACATTTTAAAAAATA
38240 TAT
60 TAT
*
38243 AGTATATAGTTTTAAAAACATTTTTGAAAACTATATAATTTTGAAAACATTTTAAAAAATATAT
1 AATATATAGTTTTAAAAACA-TTTTGAAAA-TATATAATTTTGAAAACATTTTAAAAAATATAT
*
38307 AATATATAATTTTAAAATAC-TTTTGAAAATATAT
1 AATATATAGTTTTAAAA-ACATTTTGAAAATATAT
38341 TTATAGGTTT
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
62 5 0.06
63 9 0.10
64 46 0.52
65 3 0.03
66 1 0.01
67 1 0.01
68 19 0.21
69 5 0.06
ACGTcount: A:0.48, C:0.04, G:0.05, T:0.43
Consensus pattern (62 bp):
AATATATAGTTTTAAAAACATTTTGAAAATATATAATTTTGAAAACATTTTAAAAAATATAT
Found at i:38420 original size:13 final size:13
Alignment explanation
Indices: 38402--38439 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
38392 ACTTTGTTAT
38402 TTATTTTTATTTA
1 TTATTTTTATTTA
*
38415 TTATTTTTTTTTA
1 TTATTTTTATTTA
*
38428 TTAATTTTATTT
1 TTATTTTTATTT
38440 TCATTTTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (13 bp):
TTATTTTTATTTA
Found at i:38440 original size:17 final size:17
Alignment explanation
Indices: 38398--38433 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
38388 ATTAACTTTG
* *
38398 TTATTTATTTTTATTTA
1 TTATTTTTTTTTATTAA
38415 TTATTTTTTTTTATTAA
1 TTATTTTTTTTTATTAA
38432 TT
1 TT
38434 TTATTTTCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (17 bp):
TTATTTTTTTTTATTAA
Found at i:39146 original size:21 final size:21
Alignment explanation
Indices: 39120--39167 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
39110 GAAGCAAGAA
39120 CGTCGGGGAAGTGAAAGGTCT
1 CGTCGGGGAAGTGAAAGGTCT
39141 CGTCGGGGAAGTGAAAGGTCT
1 CGTCGGGGAAGTGAAAGGTCT
*
39162 TGTCGG
1 CGTCGG
39168 AAGAGGTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.21, C:0.15, G:0.44, T:0.21
Consensus pattern (21 bp):
CGTCGGGGAAGTGAAAGGTCT
Found at i:41762 original size:32 final size:30
Alignment explanation
Indices: 41712--41827 Score: 90
Period size: 32 Copynumber: 3.7 Consensus size: 30
41702 CTGTACAATT
* *
41712 GGTGTCGCCATCCCTTCCATGCGATACCAAA
1 GGTGTCGCCATGCTTTCCA-GCGATACCAAA
* *
41743 GGGTGTCGCCATGCTTTCCAGCCAACACCCAAA
1 -GGTGTCGCCATGCTTTCCAG-CGATA-CCAAA
* *
41776 GGTGTCGCCA-GCTGTTCCAAGCGACTCCCAAC
1 GGTGTCGCCATGCT-TTCC-AGCGA-TACCAAA
* *
41808 GGTGTTGCCATGCATTCCAG
1 GGTGTCGCCATGCTTTCCAG
41828 GCGAATCCCT
Statistics
Matches: 68, Mismatches: 10, Indels: 13
0.75 0.11 0.14
Matches are distributed among these distances:
31 6 0.09
32 53 0.78
33 9 0.13
ACGTcount: A:0.21, C:0.34, G:0.23, T:0.22
Consensus pattern (30 bp):
GGTGTCGCCATGCTTTCCAGCGATACCAAA
Found at i:42281 original size:43 final size:43
Alignment explanation
Indices: 42233--42316 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
42223 AATAAATAAT
*
42233 TTTAATTTTAACCACATTGAATAATTCTTAATTTAATATTTTA
1 TTTAATTTTAACCACATTGAATAATTATTAATTTAATATTTTA
* * *
42276 TTTAATTTTAATCACATTGAATCATTATTATTTTAATATTT
1 TTTAATTTTAACCACATTGAATAATTATTAATTTAATATTT
42317 ATGTAAACAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.36, C:0.08, G:0.02, T:0.54
Consensus pattern (43 bp):
TTTAATTTTAACCACATTGAATAATTATTAATTTAATATTTTA
Found at i:43682 original size:20 final size:20
Alignment explanation
Indices: 43646--43683 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
43636 ATCCTATTCC
**
43646 CTGATAATCTTTTATTCCCA
1 CTGATAATCTTACATTCCCA
43666 CTGATAATCTTACATTCC
1 CTGATAATCTTACATTCC
43684 GTGAACCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.26, G:0.05, T:0.42
Consensus pattern (20 bp):
CTGATAATCTTACATTCCCA
Found at i:45731 original size:18 final size:17
Alignment explanation
Indices: 45710--45747 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
45700 AATTATAAAG
*
45710 TTATCCTAATATATATAA
1 TTATACTAATAT-TATAA
45728 TTATACTAATATTATAA
1 TTATACTAATATTATAA
45745 TTA
1 TTA
45748 GTCTTATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (17 bp):
TTATACTAATATTATAA
Found at i:47114 original size:14 final size:14
Alignment explanation
Indices: 47055--47118 Score: 55
Period size: 14 Copynumber: 4.9 Consensus size: 14
47045 GCTTGTAACC
* *
47055 AAAATTATATTTAT
1 AAAATTATAATAAT
47069 -AAATTATAATAAT
1 AAAATTATAATAAT
*
47082 --AA-TAAAATAAT
1 AAAATTATAATAAT
47093 AAAATTATAATAAT
1 AAAATTATAATAAT
* *
47107 ATATTTATAATA
1 AAAATTATAATA
47119 CAACTCGGAC
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
11 8 0.20
12 2 0.05
13 13 0.32
14 18 0.44
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAAATTATAATAAT
Found at i:55419 original size:21 final size:23
Alignment explanation
Indices: 55371--55421 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
55361 TTCCCTTGTG
55371 GGGGGGAATCGGTTCCCCTTCAA
1 GGGGGGAATCGGTTCCCCTTCAA
* *
55394 AGGGGGAATTGGTT-CCC-TCAA
1 GGGGGGAATCGGTTCCCCTTCAA
55415 GGGGGGA
1 GGGGGGA
55422 TCGATTACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 10 0.40
22 3 0.12
23 12 0.48
ACGTcount: A:0.20, C:0.20, G:0.41, T:0.20
Consensus pattern (23 bp):
GGGGGGAATCGGTTCCCCTTCAA
Found at i:68295 original size:18 final size:17
Alignment explanation
Indices: 68274--68311 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
68264 AATTATAAAG
*
68274 TTATCCTAATATATATAA
1 TTATACTAATAT-TATAA
68292 TTATACTAATATTATAA
1 TTATACTAATATTATAA
68309 TTA
1 TTA
68312 GTCTTATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (17 bp):
TTATACTAATATTATAA
Found at i:69931 original size:23 final size:23
Alignment explanation
Indices: 69861--69932 Score: 74
Period size: 23 Copynumber: 3.2 Consensus size: 23
69851 CAAACAAACG
* *
69861 AAAACATACCA-AAAGGTAGAGA
1 AAAATATACCATAAAGGTAGACA
* * *
69883 AAAATATACCATAAAAGTAAATA
1 AAAATATACCATAAAGGTAGACA
* *
69906 AAAATGTATCATAAAGGTAGACA
1 AAAATATACCATAAAGGTAGACA
69929 AAAA
1 AAAA
69933 ACATGTCATA
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
22 10 0.25
23 30 0.75
ACGTcount: A:0.61, C:0.10, G:0.12, T:0.17
Consensus pattern (23 bp):
AAAATATACCATAAAGGTAGACA
Found at i:70360 original size:21 final size:22
Alignment explanation
Indices: 70336--70381 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
70326 TATTTAATGA
70336 AAAAAAAAAAAAAATAACTG-G
1 AAAAAAAAAAAAAATAACTGTG
**
70357 AAAAAAGGAAAAAATAACTGTG
1 AAAAAAAAAAAAAATAACTGTG
70379 AAA
1 AAA
70382 TAAAGACAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.72, C:0.04, G:0.13, T:0.11
Consensus pattern (22 bp):
AAAAAAAAAAAAAATAACTGTG
Found at i:75691 original size:14 final size:15
Alignment explanation
Indices: 75672--75701 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
75662 TCAAACATTT
75672 AACAATCCA-AAACA
1 AACAATCCAGAAACA
75686 AACAATCCAGAAACA
1 AACAATCCAGAAACA
75701 A
1 A
75702 CAAAATCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.63, C:0.27, G:0.03, T:0.07
Consensus pattern (15 bp):
AACAATCCAGAAACA
Done.