Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003714.1 Hibiscus syriacus cultivar Beakdansim tig00007941_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47462

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37--76
3
13.3
3
84
10
55
35
5
0
60
1.19
1088--1275
104
1.8
102
88
6
288
29
8
11
50
1.69
2998--3215
53
4.1
54
84
8
304
27
19
20
32
1.96
2998--3245
104
2.3
104
82
6
250
29
18
19
33
1.95
9121--9173
20
2.7
20
80
14
65
37
16
26
18
1.93
9196--9266
22
3.5
22
77
9
62
32
16
22
28
1.96
9591--9890
54
5.6
54
88
3
435
27
17
21
34
1.95
9609--9929
54
5.9
54
87
2
241
27
17
21
33
1.96
9591--9931
108
3.2
108
85
3
436
26
17
21
34
1.96
9591--9931
162
2.1
162
85
4
447
26
17
21
34
1.96
9991--10016
2
13.0
2
100
0
52
50
0
0
50
1.00
11217--11294
23
3.4
23
84
5
97
39
2
3
53
1.33
11408--11451
22
2.0
22
82
4
54
45
0
2
52
1.13
13639--13680
19
2.2
19
95
0
75
23
19
33
23
1.97
18228--18282
21
2.6
21
91
0
92
27
18
18
36
1.94
25633--25687
20
2.8
20
88
0
83
43
12
10
32
1.78
25510--26228
182
3.8
200
79
15
888
28
15
12
43
1.84
25653--26345
182
3.8
182
92
1
1122
27
15
12
43
1.84
25653--26345
364
1.9
363
95
0
1244
27
15
12
43
1.84
26217--26678
112
4.1
112
95
0
791
25
15
14
44
1.84
26953--26996
21
2.1
21
100
0
88
45
0
9
45
1.35
27085--27494
7
57.7
7
69
22
209
39
0
3
55
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27105--27484
23
16.8
23
66
21
130
39
0
4
55
1.23
27087--27451
47
7.8
47
71
21
234
40
0
4
54
1.24
27087--27454
40
9.7
39
71
22
204
40
0
4
54
1.23
27107--27342
72
3.2
74
78
17
217
40
0
6
52
1.30
27281--27498
18
12.8
16
69
20
88
38
0
0
60
1.07
27382--27497
20
5.4
20
68
22
67
33
0
0
65
0.99
36758--36941
65
2.8
65
80
8
207
26
20
23
29
1.99
36758--36991
129
1.8
130
81
6
296
26
20
23
30
1.98
36781--36991
65
3.3
64
81
4
219
26
19
23
30
1.98
39136--39193
25
2.3
25
78
3
62
55
3
3
37
1.34
43366--43403
19
2.0
20
94
5
69
28
15
28
26
1.96
43371--43529
63
2.5
63
84
2
194
32
18
21
27
1.97
44816--44851
18
2.0
18
94
0
63
11
19
33
36
1.87
44728--45056
117
2.8
119
92
6
534
25
13
24
36
1.92
45073--45118
21
2.2
21
100
0
92
23
21
23
30
1.99
45066--45141
21
3.3
23
81
9
75
23
17
22
36
1.94

Tables:   1

The End!