genome.fa.s3716.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003716.1 Hibiscus syriacus cultivar Beakdansim tig00007946_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68459

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
997--1187	36	5.7	35	67	25	112	25	20	13	39	1.90
979--1198	65	3.4	64	85	3	282	26	20	13	39	1.90
1246--1509	134	2.0	133	81	2	305	27	30	16	25	1.96
1701--1735	3	11.7	3	100	0	70	34	0	0	65	0.93
3118--3253	65	2.1	65	90	4	213	27	24	19	29	1.98
6443--6476	18	1.9	18	88	5	52	35	26	14	23	1.94
6480--6515	18	2.0	18	100	0	72	27	33	22	16	1.95
15301--15407	44	2.4	44	88	0	151	32	21	18	27	1.97
15912--15948	13	2.8	13	91	4	56	35	10	5	48	1.61
17731--17765	13	2.6	14	86	13	56	45	8	5	40	1.58
18099--18254	65	2.4	64	82	9	201	27	24	17	30	1.97
20728--20798	19	3.6	19	94	3	106	33	14	7	45	1.71
21502--21566	14	5.0	12	83	14	69	80	1	18	0	0.80
21502--21566	19	3.4	18	87	12	94	80	1	18	0	0.80
24943--24994	21	2.6	21	90	6	81	32	13	7	46	1.72
45678--45727	20	2.5	20	87	6	66	28	18	24	30	1.97
45866--45915	21	2.5	21	87	9	70	30	22	24	24	1.99
46178--46246	22	3.1	22	85	0	66	26	20	18	34	1.96
54112--54161	23	2.2	23	96	0	91	32	0	6	62	1.20
54857--54924	25	2.8	25	86	4	95	50	1	2	45	1.26
54770--55074	38	8.4	37	74	15	208	47	3	5	42	1.44
54823--54960	63	2.2	65	82	5	165	47	2	5	44	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54883--55074	39	5.1	37	79	8	217	47	4	7	40	1.50
55038--55097	23	2.5	25	81	10	79	51	5	5	38	1.45
55006--55120	60	1.9	61	90	1	187	52	2	5	40	1.38
55063--55156	37	2.5	35	86	8	125	50	4	4	41	1.41
62697--62925	39	6.1	38	87	5	308	41	3	9	46	1.53
62954--63008	28	2.0	28	86	13	78	18	5	1	74	1.10

Tables:   1

The End!