Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003720.1 Hibiscus syriacus cultivar Beakdansim tig00007956_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54706

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1186--1223
3
12.3
3
84
15
51
68
0
0
31
0.90
1193--1235
21
2.1
20
86
4
59
67
0
0
32
0.91
7274--7439
86
1.9
86
81
0
197
31
18
22
27
1.97
10274--10325
22
2.4
22
96
0
95
34
40
21
3
1.71
12741--12826
43
2.0
43
93
0
145
39
22
18
19
1.92
19314--19345
2
16.0
2
100
0
64
50
0
0
50
1.00
19429--19637
81
2.6
81
83
4
235
28
21
10
39
1.86
22115--22187
33
2.2
33
85
2
103
32
8
12
46
1.71
22408--22750
68
5.0
68
90
2
521
31
25
14
29
1.94
23092--23861
59
13.1
59
90
0
1119
31
21
14
32
1.93
28292--28319
14
2.0
14
100
0
56
21
50
21
7
1.72
39579--39767
94
2.0
94
85
5
256
25
23
17
33
1.97
41195--41352
65
2.4
67
81
6
187
38
6
14
39
1.73
41263--41446
94
2.0
93
82
6
230
35
8
15
39
1.79
41354--41513
65
2.4
64
85
8
214
35
6
17
40
1.76
41195--41886
159
4.3
159
89
4
1044
36
7
16
39
1.76
41486--41539
26
2.0
27
92
3
92
31
9
20
38
1.84
41421--41603
94
2.0
92
84
6
244
36
7
16
39
1.77
41681--41841
65
2.4
67
83
7
204
35
6
16
41
1.74
41798--41955
81
2.0
80
92
1
262
36
8
16
38
1.80
43160--43216
21
2.9
19
84
7
71
52
1
1
43
1.21
46266--46321
10
5.4
10
79
8
58
32
1
3
62
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46937--46975
19
2.0
20
85
5
53
43
0
2
53
1.14
53186--53279
21
4.5
21
79
2
109
29
21
22
26
1.99
53915--53951
6
6.5
6
96
3
60
0
16
54
29
1.43
54076--54208
20
6.6
21
70
23
97
26
21
20
31
1.98
54097--54208
39
2.8
41
91
6
185
25
22
19
33
1.97

Tables:   1

The End!