genome.fa.s3724.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003724.1 Hibiscus syriacus cultivar Beakdansim tig00007965_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76672

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4850--4937	44	2.0	44	95	0	158	47	9	18	25	1.77
6350--6444	19	5.0	19	88	0	127	29	17	7	45	1.76
6428--7803	690	2.0	680	86	5	1896	39	17	10	33	1.83
13531--13569	20	1.9	21	89	5	62	10	25	38	25	1.87
17358--17397	21	1.9	21	85	10	55	35	10	2	52	1.48
31864--31924	31	1.9	32	83	3	79	27	16	18	37	1.92
33953--34009	17	3.5	16	85	9	80	14	24	31	29	1.94
34258--34307	24	2.0	24	84	3	64	54	0	2	44	1.11
35843--35878	17	2.1	17	94	0	63	50	8	8	33	1.63
36214--36296	30	2.7	31	77	20	102	38	8	3	49	1.51
36332--36448	29	4.1	29	77	17	111	60	1	5	31	1.31
36340--36468	54	2.4	54	78	7	145	57	0	5	36	1.27
42800--42832	2	17.0	2	93	6	59	48	0	0	51	1.00
56047--56093	24	1.9	25	91	4	78	8	25	14	51	1.71
56873--56938	2	33.0	2	100	0	132	50	0	0	50	1.00
62233--62259	11	2.5	11	100	0	54	48	18	14	18	1.82
63782--63810	14	2.1	14	100	0	58	27	0	20	51	1.47
68574--68641	20	3.3	20	63	4	55	35	22	16	26	1.94
68610--68794	20	9.2	21	72	12	122	42	22	14	21	1.89
68610--68745	40	3.4	40	78	8	159	44	22	13	19	1.86
68611--68761	80	1.9	80	91	0	248	43	22	13	21	1.87
69291--69344	20	2.7	19	83	8	72	14	16	22	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71013--71062	21	2.4	21	89	0	82	18	16	32	34	1.92
71285--71334	4	12.5	4	82	0	64	26	2	4	68	1.18
72965--73087	66	1.9	65	85	8	173	30	0	17	51	1.52
73171--73214	20	2.2	20	95	0	79	40	25	20	13	1.89
73531--73566	18	2.0	18	94	0	63	16	2	25	55	1.55
75975--76008	12	2.8	12	90	0	50	14	0	29	55	1.40

Tables:   1

The End!