genome.fa.s3726.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003726.1 Hibiscus syriacus cultivar Beakdansim tig00007967_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87112

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10881--10939	31	2.0	31	93	6	104	20	32	10	37	1.86
11487--11512	2	13.0	2	100	0	52	50	0	0	50	1.00
20046--20103	26	2.2	25	82	8	71	44	0	5	50	1.24
20124--20206	14	5.5	15	72	16	73	49	2	1	46	1.22
20142--20180	16	2.6	14	88	11	60	51	0	2	46	1.14
20175--20235	19	3.2	19	75	11	52	47	4	0	47	1.23
20958--20999	20	2.2	18	88	12	66	50	0	0	50	1.00
20961--21009	19	2.5	20	90	6	75	51	0	0	48	1.00
21403--21483	27	3.0	28	71	15	73	55	2	0	41	1.13
24426--24523	51	1.9	50	83	6	126	23	12	6	58	1.56
27752--27818	9	7.4	9	72	14	50	82	4	8	4	0.95
27778--27817	20	2.0	21	90	5	64	87	2	7	2	0.71
29082--29160	38	2.1	38	85	4	106	30	13	20	35	1.92
29165--29380	99	2.2	97	86	4	310	35	11	17	35	1.86
29375--29496	42	3.0	41	86	4	158	25	22	22	30	1.99
29390--29502	20	5.5	20	67	8	66	24	24	21	29	1.99
29660--29748	37	2.4	36	80	9	99	33	17	10	38	1.84
29707--29866	63	2.5	65	83	4	198	30	18	13	38	1.89
29707--29878	66	2.7	65	83	3	213	31	19	12	36	1.89
29827--30099	37	7.4	37	80	7	315	27	19	13	39	1.89
29840--30099	73	3.5	72	87	6	362	27	18	13	40	1.88
29761--30099	37	9.5	36	76	10	304	28	19	12	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29831--30244	73	5.6	73	79	7	331	28	20	13	37	1.90
30104--30223	36	3.3	36	70	2	114	27	22	13	36	1.91
30529--31089	91	6.0	91	86	7	768	37	16	21	24	1.93
30839--31089	103	2.5	103	86	9	346	37	16	21	24	1.94
31218--31694	44	10.9	44	69	7	245	31	19	19	29	1.97
31212--31708	132	3.8	132	88	1	730	30	19	19	30	1.96
32197--32250	13	4.5	11	77	20	54	81	1	11	5	0.93
32202--32249	6	7.7	6	78	17	53	81	2	12	4	0.93
35153--35206	11	4.8	11	77	11	56	3	11	0	85	0.73
35170--35199	8	3.6	8	95	4	51	0	13	0	86	0.57
35165--35211	19	2.5	19	86	6	60	2	14	0	82	0.75
35158--35211	27	2.0	27	86	10	76	3	12	0	83	0.78
35158--35211	7	7.9	7	80	14	51	3	12	0	83	0.78
40161--40215	22	2.5	22	93	0	92	18	3	9	69	1.30
47231--47277	18	2.6	18	93	0	76	19	4	44	31	1.70
49079--49173	2	47.5	2	97	0	181	49	0	1	49	1.07
55175--55254	42	2.0	40	85	5	106	31	32	7	28	1.85
57505--57550	2	23.0	2	100	0	92	50	0	0	50	1.00
57547--57583	17	2.2	17	100	0	74	54	16	0	29	1.43
57824--58000	85	2.1	85	93	0	300	27	16	11	44	1.82
58729--58791	30	2.1	30	85	5	83	33	3	6	57	1.40
60981--61034	19	2.9	18	77	22	58	77	3	18	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60988--61039	13	3.9	13	82	12	54	78	1	19	0	0.84
60985--61035	11	4.9	10	80	19	52	78	1	19	0	0.85
60983--61039	18	3.1	18	80	14	64	78	1	19	0	0.83
70115--70176	22	2.7	23	82	9	74	17	24	35	22	1.95
70092--70177	23	3.9	23	74	15	74	16	24	36	23	1.94

Tables:   1

The End!