genome.fa.s3727.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003727.1 Hibiscus syriacus cultivar Beakdansim tig00007968_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105825

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3735--3813	39	2.1	38	81	11	90	22	12	11	53	1.71
10620--10656	3	12.3	3	100	0	74	67	0	0	32	0.91
15133--15158	3	8.7	3	100	0	52	0	30	0	69	0.89
20530--20730	50	4.0	50	92	0	285	37	5	27	29	1.79
24942--25013	31	2.3	32	90	7	121	43	12	5	38	1.66
31103--31130	2	14.0	2	100	0	56	50	0	0	50	1.00
38391--38539	76	2.0	76	97	0	280	30	8	18	41	1.81
38608--38670	22	2.9	22	87	0	90	39	20	6	33	1.78
41558--41616	27	2.1	27	90	3	91	33	20	15	30	1.93
50478--50515	20	1.9	20	88	0	58	21	26	10	42	1.85
50769--50855	38	2.3	38	74	4	86	33	36	10	19	1.86
57645--57693	17	2.9	17	73	11	55	32	24	4	38	1.74
62506--62863	178	2.0	177	95	1	646	40	10	8	39	1.72
64315--64353	20	2.0	20	89	0	60	33	28	7	30	1.85
64418--64471	22	2.5	22	90	3	83	33	29	9	27	1.88
64593--64664	20	3.5	21	78	14	78	23	9	29	37	1.87
64574--64664	42	2.2	40	86	3	119	26	9	27	36	1.88
64574--64648	20	3.7	20	81	13	89	29	9	26	34	1.88
66078--66281	75	2.7	76	83	3	261	21	23	31	23	1.98
66575--66617	21	2.0	21	90	0	68	30	27	4	37	1.77
66891--66934	17	2.6	17	85	7	63	56	29	0	13	1.38
66886--66936	9	6.2	8	78	17	52	58	27	0	13	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68866--68924	21	2.8	20	82	7	66	15	25	35	23	1.94
74696--74901	75	2.7	75	84	3	263	20	24	31	23	1.98
77730--77797	29	2.3	30	78	14	77	51	0	10	38	1.36
79162--79241	40	2.0	39	80	2	88	32	13	15	38	1.86
82759--82784	3	8.7	3	100	0	52	34	0	0	65	0.93
84121--84153	12	2.8	12	95	0	57	30	9	21	39	1.84
84133--84405	83	3.3	83	94	0	449	29	14	20	36	1.92
86971--87021	25	2.0	25	84	0	66	66	1	1	29	1.13

Tables:   1

The End!