genome.fa.s3729.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003729.1 Hibiscus syriacus cultivar Beakdansim tig00007973_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95309

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5822--5846	3	8.3	3	100	0	50	64	0	0	36	0.94
8697--8755	30	2.0	30	83	6	75	47	0	1	50	1.11
8938--8980	13	3.2	13	86	6	59	37	0	2	60	1.10
11621--11686	30	2.2	30	91	0	105	10	30	25	33	1.90
13366--13405	17	2.3	18	83	12	57	50	0	12	37	1.41
13934--13991	23	2.5	23	85	0	71	58	10	18	12	1.61
17582--17628	22	2.1	23	88	4	69	23	12	25	38	1.90
21117--21301	72	2.5	73	87	6	259	47	18	15	18	1.83
22194--22402	105	2.0	104	98	0	400	53	11	15	19	1.72
25460--25504	12	3.8	12	85	2	56	15	11	42	31	1.82
26617--26664	21	2.3	21	78	7	53	31	20	2	45	1.63
26875--27180	149	2.1	149	97	0	585	36	21	15	27	1.93
29421--29501	35	2.3	36	85	4	103	30	4	9	54	1.55
39934--39995	20	2.9	21	85	9	72	22	32	25	19	1.97
43519--43591	37	2.0	37	81	10	87	47	5	1	45	1.34
44727--44794	31	2.2	30	79	7	75	48	2	4	44	1.38
45372--45429	29	2.0	29	93	6	100	41	6	1	50	1.39
48651--48679	2	14.5	2	100	0	58	51	0	0	48	1.00
49233--49288	18	3.2	18	72	27	57	39	1	12	46	1.52
55025--55152	59	2.2	59	82	2	150	28	17	25	28	1.98
56014--56094	37	2.2	37	95	0	144	17	25	40	16	1.89
62508--62756	121	2.1	121	99	0	489	36	16	12	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64501--64545	22	2.0	22	91	0	72	13	37	33	15	1.86
64523--64606	29	2.9	29	90	0	132	14	33	28	23	1.94
64624--64687	33	1.9	33	90	0	101	14	28	31	26	1.95
67844--67883	20	2.0	20	95	0	71	37	20	20	22	1.94
67893--68066	20	8.8	20	74	9	142	39	22	13	24	1.90
67893--68047	60	2.6	59	79	10	170	40	22	14	23	1.90
67836--68074	100	2.4	100	87	4	333	39	21	14	24	1.90
68015--68074	20	3.0	20	78	11	70	41	21	10	26	1.85
68813--68846	12	2.8	12	90	0	50	55	29	0	14	1.40
71269--71304	18	2.0	18	94	0	63	55	25	2	16	1.55
71621--71664	20	2.2	20	95	0	79	13	20	25	40	1.89
73504--73553	4	12.5	4	82	0	64	68	4	2	26	1.18
73776--73825	21	2.4	21	89	0	82	34	32	16	18	1.92
75498--75551	20	2.7	19	83	8	72	46	22	16	14	1.84
76048--76232	20	9.2	20	72	11	121	21	14	21	42	1.89
76097--76232	40	3.4	40	77	8	150	20	13	22	44	1.86
76081--76231	80	1.9	80	90	0	239	21	13	21	43	1.87
76201--76268	20	3.3	20	63	4	55	26	16	22	35	1.94
81029--81057	14	2.1	14	100	0	58	51	20	0	27	1.47
82582--82608	11	2.5	11	100	0	54	18	14	18	48	1.82
85388--85751	157	2.3	156	78	12	372	28	19	5	46	1.72
87904--87978	2	37.5	2	100	0	150	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88756--88802	24	1.9	25	91	4	78	51	14	25	8	1.71

Tables:   1

The End!