Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003731.1 Hibiscus syriacus cultivar Beakdansim tig00007978_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 120964
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Found at i:695 original size:23 final size:24
Alignment explanation
Indices: 668--720 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
658 GTATTCGAAA
668 TTTGATCTTGGTC-ATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
691 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
715 TTTGAT
1 TTTGAT
721 GATTTTCAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 13 0.48
24 14 0.52
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.42
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:3098 original size:33 final size:33
Alignment explanation
Indices: 3061--3241 Score: 191
Period size: 33 Copynumber: 5.3 Consensus size: 33
3051 GGAAATTACT
*
3061 ATCGCAACGAGAGAATTGCAATGCGAAATGAAA
1 ATCGCAACGAGAGAATCGCAATGCGAAATGAAA
* * * *
3094 ATCGCAACGTGAAAATCGCAACGCGAATATGAAT
1 ATCGCAACGAGAGAATCGCAATGCGAA-ATGAAA
* *
3128 ATCACAACGCGGAAATGACTATCGCAATGCGAAATGAAA
1 ATCGCAA--C-GAGA-GA--ATCGCAATGCGAAATGAAA
**
3167 ATCGCAACGAGAGAATCATAATGCGAAATGAAA
1 ATCGCAACGAGAGAATCGCAATGCGAAATGAAA
* *
3200 ATCGCAACGAGGGAATCGCAAAGCGAAATGAAA
1 ATCGCAACGAGAGAATCGCAATGCGAAATGAAA
*
3233 ATTGCAACG
1 ATCGCAACG
3242 CGAATTTAGT
Statistics
Matches: 121, Mismatches: 20, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
33 77 0.64
34 11 0.09
35 2 0.02
36 4 0.03
37 3 0.02
38 1 0.01
39 11 0.09
40 12 0.10
ACGTcount: A:0.44, C:0.18, G:0.23, T:0.15
Consensus pattern (33 bp):
ATCGCAACGAGAGAATCGCAATGCGAAATGAAA
Found at i:3108 original size:14 final size:14
Alignment explanation
Indices: 3089--3116 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
3079 CAATGCGAAA
3089 TGAAAATCGCAACG
1 TGAAAATCGCAACG
3103 TGAAAATCGCAACG
1 TGAAAATCGCAACG
3117 CGAATATGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.21, G:0.21, T:0.14
Consensus pattern (14 bp):
TGAAAATCGCAACG
Found at i:3126 original size:20 final size:19
Alignment explanation
Indices: 3078--3175 Score: 89
Period size: 20 Copynumber: 5.3 Consensus size: 19
3068 CGAGAGAATT
*
3078 GCAATGCGAAATGAAAATC
1 GCAACGCGAAATGAAAATC
3097 GCAA--CG---TGAAAATC
1 GCAACGCGAAATGAAAATC
*
3111 GCAACGCGAATATGAATATC
1 GCAACGCGAA-ATGAAAATC
* **
3131 ACAACGCGGAAATGACTATC
1 GCAACGC-GAAATGAAAATC
*
3151 GCAATGCGAAATGAAAATC
1 GCAACGCGAAATGAAAATC
3170 GCAACG
1 GCAACG
3176 AGAGAATCAT
Statistics
Matches: 64, Mismatches: 8, Indels: 14
0.74 0.09 0.16
Matches are distributed among these distances:
14 12 0.19
16 2 0.03
17 2 0.03
19 19 0.30
20 26 0.41
21 3 0.05
ACGTcount: A:0.43, C:0.20, G:0.21, T:0.15
Consensus pattern (19 bp):
GCAACGCGAAATGAAAATC
Found at i:3295 original size:33 final size:33
Alignment explanation
Indices: 3251--3330 Score: 133
Period size: 33 Copynumber: 2.4 Consensus size: 33
3241 GCGAATTTAG
* * *
3251 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTCTCTCGTTGCGATTTTCA
3284 TTTCGCATTGCGATTCTCTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTCTCTCGTTGCGATTTTCA
3317 TTTCGCATTGCGAT
1 TTTCGCATTGCGAT
3331 AGTCATTTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.11, C:0.21, G:0.21, T:0.46
Consensus pattern (33 bp):
TTTCGCATTGCGATTCTCTCGTTGCGATTTTCA
Found at i:3296 original size:19 final size:19
Alignment explanation
Indices: 3272--3330 Score: 74
Period size: 19 Copynumber: 3.4 Consensus size: 19
3262 GATTTTGTCG
3272 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
3291 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
3305 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
3324 TTGCGAT
1 TTGCGAT
3331 AGTCATTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 6 0.18
16 7 0.21
17 7 0.21
19 13 0.39
ACGTcount: A:0.14, C:0.22, G:0.19, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:3338 original size:19 final size:17
Alignment explanation
Indices: 3280--3330 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
3270 CGTTGCGATT
3280 TTCATTTCGCATTGCGA
1 TTCATTTCGCATTGCGA
*
3297 TTC-TCTCG--TTGCGA
1 TTCATTTCGCATTGCGA
3311 TTTTCATTTCGCATTGCGA
1 --TTCATTTCGCATTGCGA
3330 T
1 T
3331 AGTCATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 10
0.69 0.05 0.26
Matches are distributed among these distances:
14 6 0.22
16 7 0.26
17 8 0.30
19 6 0.22
ACGTcount: A:0.14, C:0.24, G:0.18, T:0.45
Consensus pattern (17 bp):
TTCATTTCGCATTGCGA
Found at i:3989 original size:21 final size:21
Alignment explanation
Indices: 3923--3989 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
3913 GTGAATCGGG
*
3923 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
3943 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
3965 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
3986 CTCT
1 CTCT
3990 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:4008 original size:42 final size:41
Alignment explanation
Indices: 3923--4045 Score: 113
Period size: 42 Copynumber: 2.9 Consensus size: 41
3913 GTGAATCGGG
* * * *
3923 CTCTTGAATGGTGGGA-GGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGGA-CTC-TCGAGGATGACAGGGGC
*
3965 CTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGAGGGGACTCTCGAGG-ATGACAGGGGC
* * * * *
4007 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGACAGG
1 CTCTTGAACGGTGGGAGGGGACTCTCGA-GGATGACAGG
4046 CGAGTCGGGC
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
41 4 0.06
42 57 0.85
43 6 0.09
ACGTcount: A:0.23, C:0.19, G:0.37, T:0.22
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGGACTCTCGAGGATGACAGGGGC
Found at i:4642 original size:94 final size:94
Alignment explanation
Indices: 4496--4875 Score: 656
Period size: 94 Copynumber: 4.1 Consensus size: 94
4486 ATGGATTGCA
* *
4496 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCAGAGTATTAAAGAATACACAGT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
4560 TTAGCAGAATTGGCAGCAACCGAACAAAT
66 TTAGCAGAATTGGCAGCAACCGAACAAAT
4589 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
4654 TTAGCAGAATTGGCAGCAACCGAACAAAT
66 TTAGCAGAATTGGCAGCAACCGAACAAAT
* *
4683 TTACTTTCAACCAAAAGACAAAACAAAGACCAATACTAACTTCACAGTGTTAAAGAATATACAGT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
* *
4748 TTAGCAAAATTGGCAGCAACCGAATAAAT
66 TTAGCAGAATTGGCAGCAACCGAACAAAT
*
4777 TTAC-TTCAACCAAAAGACAAAACAAAAGACAAATACTAACTTCACAGTGTTAAAGAATAAACAG
1 TTACTTTCAACCAAAAGACAAAAC-AAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAG
* *
4841 TTTAGCAGTATTGGCAGCAACCGAATAAAT
65 TTTAGCAGAATTGGCAGCAACCGAACAAAT
4871 TTACT
1 TTACT
4876 AAGCAATCTA
Statistics
Matches: 274, Mismatches: 10, Indels: 4
0.95 0.03 0.01
Matches are distributed among these distances:
93 23 0.08
94 251 0.92
ACGTcount: A:0.47, C:0.19, G:0.12, T:0.21
Consensus pattern (94 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
TTAGCAGAATTGGCAGCAACCGAACAAAT
Found at i:6651 original size:19 final size:19
Alignment explanation
Indices: 6565--6677 Score: 119
Period size: 19 Copynumber: 6.1 Consensus size: 19
6555 TCTTTTGGTT
*
6565 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
6584 GAGAATGAAAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
**
6604 GGAAATGACTATCGCAA--C
1 -GAAATGAAAATCGCAACGC
*
6622 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
6638 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
*
6657 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
6676 GA
1 GA
6678 TTTTGGTTGC
Statistics
Matches: 80, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
14 9 0.11
15 1 0.01
16 2 0.03
17 1 0.01
18 2 0.03
19 35 0.44
20 28 0.35
21 2 0.03
ACGTcount: A:0.45, C:0.19, G:0.24, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:6724 original size:21 final size:20
Alignment explanation
Indices: 6704--6781 Score: 68
Period size: 20 Copynumber: 3.9 Consensus size: 20
6694 CGATTATCTC
6704 GTTGCGATTTTCATTTCTC-T
1 GTTGCGATTTTCATTT-TCAT
* ** *
6724 CATTGCGATAGTCATTTTCGT
1 -GTTGCGATTTTCATTTTCAT
* *
6745 GTTGCAATTTTTATTTTCAT
1 GTTGCGATTTTCATTTTCAT
*
6765 GTTGCGATTTTAATTTT
1 GTTGCGATTTTCATTTT
6782 AGAAACTATT
Statistics
Matches: 45, Mismatches: 11, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
20 31 0.69
21 14 0.31
ACGTcount: A:0.17, C:0.14, G:0.15, T:0.54
Consensus pattern (20 bp):
GTTGCGATTTTCATTTTCAT
Found at i:7357 original size:20 final size:20
Alignment explanation
Indices: 7332--7605 Score: 293
Period size: 20 Copynumber: 13.6 Consensus size: 20
7322 CTTTAAAAAT
7332 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
7352 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* * *
7372 CGCATTGCGATTTACGTATT
1 CGCGTTGCGATTTACGGATA
* *
7392 CTCGTTGCGATTTACAGATA
1 CGCGTTGCGATTTACGGATA
* *
7412 CGCGTTGCGATTTACGTATT
1 CGCGTTGCGATTTACGGATA
*
7432 CTCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
**
7452 CGTATTGCGATTTAAC--ATA
1 CGCGTTGCGATTT-ACGGATA
* **
7471 TTGTCGTTGCGATTTATAGATA
1 -CG-CGTTGCGATTTACGGATA
* *
7493 CGCGTTGCGATTTACGTATT
1 CGCGTTGCGATTTACGGATA
*
7513 CTCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
7533 CGCATTGCGATTTAACGTAT-
1 CGCGTTGCGATTT-ACGGATA
*
7553 TGTCGTTGCGATTTACGGATA
1 CG-CGTTGCGATTTACGGATA
7574 CGCGTTGCGATTTTACGGATA
1 CGCGTTGCGA-TTTACGGATA
*
7595 CTCGTTGCGAT
1 CGCGTTGCGAT
7606 AGTCAGAATC
Statistics
Matches: 207, Mismatches: 38, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
19 3 0.01
20 154 0.74
21 47 0.23
22 3 0.01
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.36
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:7398 original size:40 final size:40
Alignment explanation
Indices: 7336--7605 Score: 378
Period size: 40 Copynumber: 6.7 Consensus size: 40
7326 AAAAATCGCG
* * *
7336 TTGCGATTTACGGATACGCGTTGCGATTTACGGATACGCA
1 TTGCGATTTACGTATTCTCGTTGCGATTTACGGATACGCA
* *
7376 TTGCGATTTACGTATTCTCGTTGCGATTTACAGATACGCG
1 TTGCGATTTACGTATTCTCGTTGCGATTTACGGATACGCA
*
7416 TTGCGATTTACGTATTCTCGTTGCGATTTACGGATACGTA
1 TTGCGATTTACGTATTCTCGTTGCGATTTACGGATACGCA
* * ** *
7456 TTGCGATTTAACATATTGTCGTTGCGATTTATAGATACGCG
1 TTGCGATTT-ACGTATTCTCGTTGCGATTTACGGATACGCA
7497 TTGCGATTTACGTATTCTCGTTGCGATTTACGGATACGCA
1 TTGCGATTTACGTATTCTCGTTGCGATTTACGGATACGCA
* *
7537 TTGCGATTTAACGTATTGTCGTTGCGATTTACGGATACGCG
1 TTGCGATTT-ACGTATTCTCGTTGCGATTTACGGATACGCA
* *
7578 TTGCGATTTTACGGATACTCGTTGCGAT
1 TTGCGA-TTTACGTATTCTCGTTGCGAT
7606 AGTCAGAATC
Statistics
Matches: 203, Mismatches: 24, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
40 116 0.57
41 84 0.41
42 3 0.01
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.37
Consensus pattern (40 bp):
TTGCGATTTACGTATTCTCGTTGCGATTTACGGATACGCA
Found at i:7507 original size:81 final size:81
Alignment explanation
Indices: 7332--7605 Score: 442
Period size: 81 Copynumber: 3.4 Consensus size: 81
7322 CTTTAAAAAT
* *
7332 CGCGTTGCGATTTACGGATACGCGTTGCGATTTACGGATACGCATTGCGATTT-ACGTATTCTCG
1 CGCGTTGCGATTTACGGATACTCGTTGCGATTTACGGATACGCATTGCGATTTAACGTATTGTCG
7396 TTGCGATTTACAGATA
66 TTGCGATTTACAGATA
* * * *
7412 CGCGTTGCGATTTACGTATTCTCGTTGCGATTTACGGATACGTATTGCGATTTAACATATTGTCG
1 CGCGTTGCGATTTACGGATACTCGTTGCGATTTACGGATACGCATTGCGATTTAACGTATTGTCG
*
7477 TTGCGATTTATAGATA
66 TTGCGATTTACAGATA
* *
7493 CGCGTTGCGATTTACGTATTCTCGTTGCGATTTACGGATACGCATTGCGATTTAACGTATTGTCG
1 CGCGTTGCGATTTACGGATACTCGTTGCGATTTACGGATACGCATTGCGATTTAACGTATTGTCG
*
7558 TTGCGATTTACGGATA
66 TTGCGATTTACAGATA
7574 CGCGTTGCGATTTTACGGATACTCGTTGCGAT
1 CGCGTTGCGA-TTTACGGATACTCGTTGCGAT
7606 AGTCAGAATC
Statistics
Matches: 179, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
80 49 0.27
81 111 0.62
82 19 0.11
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.36
Consensus pattern (81 bp):
CGCGTTGCGATTTACGGATACTCGTTGCGATTTACGGATACGCATTGCGATTTAACGTATTGTCG
TTGCGATTTACAGATA
Found at i:7642 original size:61 final size:61
Alignment explanation
Indices: 7331--7646 Score: 220
Period size: 61 Copynumber: 5.2 Consensus size: 61
7321 GCTTTAAAAA
* * * *
7331 TCGCGTTGCGA-TTTACGGATACGCGTTGCGAT-TTACGGATACGCATTGCGATTTACGTAT
1 TCGCGTTGCGATTTTACGGATACGCATTGCGATGTAACGAAT-CGCGTTGCGATTTACGTAT
* * * * * * *
7391 TCTCGTTGCGA-TTTACAGATACGCGTTGCGAT-TTACGTATTCTCGTTGCGATTTACGGAT
1 TCGCGTTGCGATTTTACGGATACGCATTGCGATGTAACG-AATCGCGTTGCGATTTACGTAT
* ** * * * *
7451 ACGTATTGCGATTTAAC--ATATTGTCGTTGCGATTTATA-G-ATACGCGTTGCGATTTACGTAT
1 TCGCGTTGCGATTTTACGGATA-CG-CATTGCGATGTA-ACGAAT-CGCGTTGCGATTTACGTAT
* * * * *
7512 TCTCGTTGCGA-TTTACGGATACGCATTGCGATTTAACGTATTGTCGTTGCGATTTACGGAT
1 TCGCGTTGCGATTTTACGGATACGCATTGCGATGTAACGAATCG-CGTTGCGATTTACGTAT
* * * * * *
7573 ACGCGTTGCGATTTTACGGATACTCGTTGCGATAGTCA-GAATCGCGTTGCGATTTTCATAT
1 TCGCGTTGCGATTTTACGGATACGCATTGCGAT-GTAACGAATCGCGTTGCGATTTACGTAT
*
7634 TCGAGTTGCGATT
1 TCGCGTTGCGATT
7647 CTGGAAAATC
Statistics
Matches: 203, Mismatches: 39, Indels: 27
0.75 0.14 0.10
Matches are distributed among these distances:
59 4 0.02
60 77 0.38
61 91 0.45
62 28 0.14
63 3 0.01
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.37
Consensus pattern (61 bp):
TCGCGTTGCGATTTTACGGATACGCATTGCGATGTAACGAATCGCGTTGCGATTTACGTAT
Found at i:8113 original size:31 final size:29
Alignment explanation
Indices: 8044--8114 Score: 81
Period size: 32 Copynumber: 2.3 Consensus size: 29
8034 TATTATTATT
8044 TTTTTAAA-ATTTTATATTTAAATAACTA
1 TTTTTAAATATTTTATATTTAAATAACTA
* *
8072 TGTTTATAAATATTTTTATATTATTAATAATTA
1 T-TTT-TAAATA-TTTTATATT-TAAATAACTA
8105 TTTTTAAATA
1 TTTTTAAATA
8115 AATATTATCT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
28 1 0.03
29 3 0.08
30 4 0.11
31 7 0.19
32 12 0.33
33 9 0.25
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (29 bp):
TTTTTAAATATTTTATATTTAAATAACTA
Found at i:8738 original size:3 final size:3
Alignment explanation
Indices: 8732--8796 Score: 94
Period size: 3 Copynumber: 21.7 Consensus size: 3
8722 TTTATTATTA
* * *
8732 TTG TTG TTG TTG TTG TTG TTT TTG TTG TTG TTG TTG TTC TTG ATG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
*
8780 TTG TTG TTC TTG TTG TT
1 TTG TTG TTG TTG TTG TT
8797 TTATTAATAT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.02, C:0.03, G:0.28, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:8758 original size:18 final size:18
Alignment explanation
Indices: 8735--8796 Score: 106
Period size: 18 Copynumber: 3.4 Consensus size: 18
8725 ATTATTATTG
*
8735 TTGTTGTTGTTGTTGTTT
1 TTGTTGTTGTTGTTGTTC
8753 TTGTTGTTGTTGTTGTTC
1 TTGTTGTTGTTGTTGTTC
*
8771 TTGATGTTGTTGTTGTTC
1 TTGTTGTTGTTGTTGTTC
8789 TTGTTGTT
1 TTGTTGTT
8797 TTATTAATAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 41 1.00
ACGTcount: A:0.02, C:0.03, G:0.27, T:0.68
Consensus pattern (18 bp):
TTGTTGTTGTTGTTGTTC
Found at i:9531 original size:21 final size:20
Alignment explanation
Indices: 9488--9538 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 20
9478 GATTTCGAGC
9488 AAAAAAAAGAACAACCAAAGA
1 AAAAAAAAGAACAA-CAAAGA
9509 AAAAAAAAGAAACAA-AAATGA
1 AAAAAAAAG-AACAACAAA-GA
9530 AAGAAAAAA
1 AA-AAAAAA
9539 CGAGAGGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 3 0.11
21 13 0.48
22 11 0.41
ACGTcount: A:0.80, C:0.08, G:0.10, T:0.02
Consensus pattern (20 bp):
AAAAAAAAGAACAACAAAGA
Found at i:12068 original size:31 final size:31
Alignment explanation
Indices: 12044--12153 Score: 166
Period size: 31 Copynumber: 3.5 Consensus size: 31
12034 CATAGATTCA
* * *
12044 GAAGAACTTAGGTAATCAGTCCATATGTCCC
1 GAAGAACATAGGTAAACAGTCCATATGTACC
12075 GAAGAACATAGGTAAACAGTCCATATGTACC
1 GAAGAACATAGGTAAACAGTCCATATGTACC
* *
12106 GAAGAACATAGGTAAACAGTCCATATATCCC
1 GAAGAACATAGGTAAACAGTCCATATGTACC
*
12137 GAAGAATATAGGTAAAC
1 GAAGAACATAGGTAAAC
12154 CCTCGACCTT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 73 1.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (31 bp):
GAAGAACATAGGTAAACAGTCCATATGTACC
Found at i:12753 original size:20 final size:20
Alignment explanation
Indices: 12730--12782 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
12720 CTAACTGAGA
*
12730 TATAGATACCCTGTTTATGG
1 TATAGATACCCTGTCTATGG
*
12750 TATAGATACTCTGTCTATGG
1 TATAGATACCCTGTCTATGG
12770 TATAGATACCCTG
1 TATAGATACCCTG
12783 ATAATATTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (20 bp):
TATAGATACCCTGTCTATGG
Found at i:15709 original size:13 final size:13
Alignment explanation
Indices: 15683--15725 Score: 68
Period size: 13 Copynumber: 3.3 Consensus size: 13
15673 ACGTTGACCC
*
15683 GACCCGACCTGTT
1 GACCCGACCCGTT
*
15696 GACCCAACCCGTT
1 GACCCGACCCGTT
15709 GACCCGACCCGTT
1 GACCCGACCCGTT
15722 GACC
1 GACC
15726 GTTGACTGAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.19, C:0.44, G:0.21, T:0.16
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:18290 original size:12 final size:12
Alignment explanation
Indices: 18275--18344 Score: 70
Period size: 12 Copynumber: 5.8 Consensus size: 12
18265 GATAAATGAC
18275 CTGAATTCTGTT
1 CTGAATTCTGTT
* *
18287 CTGATTTCTGAT
1 CTGAATTCTGTT
*
18299 CTGGATTCTGTT
1 CTGAATTCTGTT
*
18311 ATG-ATATCTGTT
1 CTGAAT-TCTGTT
18323 CTGAATTCTGTT
1 CTGAATTCTGTT
* *
18335 TTGATTTCTG
1 CTGAATTCTG
18345 ATATCTTCGT
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
11 2 0.04
12 43 0.91
13 2 0.04
ACGTcount: A:0.16, C:0.14, G:0.19, T:0.51
Consensus pattern (12 bp):
CTGAATTCTGTT
Found at i:18294 original size:48 final size:48
Alignment explanation
Indices: 18238--18346 Score: 139
Period size: 48 Copynumber: 2.3 Consensus size: 48
18228 AAATATTTTA
*
18238 TCTGATTTCTGA-CTTGAATTCTGTTCTGATAAATGACCTGAATTCTGT
1 TCTGATTTCTGATC-TGAATTCTGTTATGATAAATGACCTGAATTCTGT
* ** **
18286 TCTGATTTCTGATCTGGATTCTGTTATGATATCTGTTCTGAATTCTGT
1 TCTGATTTCTGATCTGAATTCTGTTATGATAAATGACCTGAATTCTGT
*
18334 TTTGATTTCTGAT
1 TCTGATTTCTGAT
18347 ATCTTCGTTT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
48 52 0.98
49 1 0.02
ACGTcount: A:0.19, C:0.15, G:0.17, T:0.49
Consensus pattern (48 bp):
TCTGATTTCTGATCTGAATTCTGTTATGATAAATGACCTGAATTCTGT
Found at i:18306 original size:24 final size:24
Alignment explanation
Indices: 18238--18346 Score: 121
Period size: 24 Copynumber: 4.5 Consensus size: 24
18228 AAATATTTTA
18238 TCTGATTTCTGA-CTTGAATTCTGT
1 TCTGATTTCTGATC-TGAATTCTGT
*** *
18262 TCTGATAAATGACCTGAATTCTGT
1 TCTGATTTCTGATCTGAATTCTGT
*
18286 TCTGATTTCTGATCTGGATTCTGT
1 TCTGATTTCTGATCTGAATTCTGT
* * *
18310 TATGATATCTGTTCTGAATTCTGT
1 TCTGATTTCTGATCTGAATTCTGT
*
18334 TTTGATTTCTGAT
1 TCTGATTTCTGAT
18347 ATCTTCGTTT
Statistics
Matches: 69, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
24 68 0.99
25 1 0.01
ACGTcount: A:0.19, C:0.15, G:0.17, T:0.49
Consensus pattern (24 bp):
TCTGATTTCTGATCTGAATTCTGT
Found at i:18513 original size:2 final size:2
Alignment explanation
Indices: 18506--18558 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
18496 GGGATGGGGG
18506 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
18548 TA TA TA TA TA T
1 TA TA TA TA TA T
18559 GTTTTAAAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:20481 original size:18 final size:18
Alignment explanation
Indices: 20460--20514 Score: 101
Period size: 18 Copynumber: 3.1 Consensus size: 18
20450 CCGCTTACCT
*
20460 GACCCGTTGACCCGACCC
1 GACCTGTTGACCCGACCC
20478 GACCTGTTGACCCGACCC
1 GACCTGTTGACCCGACCC
20496 GACCTGTTGACCCGACCC
1 GACCTGTTGACCCGACCC
20514 G
1 G
20515 TTGACCGTTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.16, C:0.45, G:0.24, T:0.15
Consensus pattern (18 bp):
GACCTGTTGACCCGACCC
Found at i:20507 original size:13 final size:13
Alignment explanation
Indices: 20491--20520 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
20481 CTGTTGACCC
*
20491 GACCCGACCTGTT
1 GACCCGACCCGTT
20504 GACCCGACCCGTT
1 GACCCGACCCGTT
20517 GACC
1 GACC
20521 GTTGACCGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.43, G:0.23, T:0.17
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:23094 original size:48 final size:48
Alignment explanation
Indices: 23038--23146 Score: 139
Period size: 48 Copynumber: 2.3 Consensus size: 48
23028 AAATATTTTA
*
23038 TCTGATTTCTGA-CTTGAATTCTGTTATGATAAATGACCTGAATTCTGT
1 TCTGATTTCTGATC-TGAATTATGTTATGATAAATGACCTGAATTCTGT
* ** **
23086 TCTGATTTCTGATCTGGATTATGTTATGATATCTGTTCTGAATTCTGT
1 TCTGATTTCTGATCTGAATTATGTTATGATAAATGACCTGAATTCTGT
*
23134 TTTGATTTCTGAT
1 TCTGATTTCTGAT
23147 ATCTTCGTTT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
48 52 0.98
49 1 0.02
ACGTcount: A:0.21, C:0.13, G:0.17, T:0.49
Consensus pattern (48 bp):
TCTGATTTCTGATCTGAATTATGTTATGATAAATGACCTGAATTCTGT
Found at i:23095 original size:12 final size:12
Alignment explanation
Indices: 23075--23144 Score: 61
Period size: 12 Copynumber: 5.8 Consensus size: 12
23065 GATAAATGAC
*
23075 CTGAATTCTGTT
1 CTGATTTCTGTT
*
23087 CTGATTTCTGAT
1 CTGATTTCTGTT
*
23099 CTGGA-TTATGTT
1 CT-GATTTCTGTT
* *
23111 ATGATATCTGTT
1 CTGATTTCTGTT
*
23123 CTGAATTCTGTT
1 CTGATTTCTGTT
*
23135 TTGATTTCTG
1 CTGATTTCTG
23145 ATATCTTCGT
Statistics
Matches: 44, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
11 2 0.05
12 40 0.91
13 2 0.05
ACGTcount: A:0.17, C:0.13, G:0.19, T:0.51
Consensus pattern (12 bp):
CTGATTTCTGTT
Found at i:23110 original size:24 final size:24
Alignment explanation
Indices: 23040--23146 Score: 90
Period size: 24 Copynumber: 4.5 Consensus size: 24
23030 ATATTTTATC
*
23040 TGATTTCTGA-CTTGAATTCTGTTA
1 TGATTTCTGATC-TGAATTATGTTA
*** * * *
23064 TGATAAATGACCTGAATTCTGTTC
1 TGATTTCTGATCTGAATTATGTTA
*
23088 TGATTTCTGATCTGGATTATGTTA
1 TGATTTCTGATCTGAATTATGTTA
* * * *
23112 TGATATCTGTTCTGAATTCTGTTT
1 TGATTTCTGATCTGAATTATGTTA
23136 TGATTTCTGAT
1 TGATTTCTGAT
23147 ATCTTCGTTT
Statistics
Matches: 64, Mismatches: 18, Indels: 2
0.76 0.21 0.02
Matches are distributed among these distances:
24 63 0.98
25 1 0.02
ACGTcount: A:0.21, C:0.12, G:0.18, T:0.49
Consensus pattern (24 bp):
TGATTTCTGATCTGAATTATGTTA
Found at i:24575 original size:11 final size:11
Alignment explanation
Indices: 24559--24592 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
24549 GTATCGATGC
24559 ACTGATACAGT
1 ACTGATACAGT
*
24570 ACTGATACACT
1 ACTGATACAGT
*
24581 ACTGCTACAGT
1 ACTGATACAGT
24592 A
1 A
24593 ACTTTCGTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (11 bp):
ACTGATACAGT
Found at i:25338 original size:31 final size:31
Alignment explanation
Indices: 25300--25455 Score: 217
Period size: 31 Copynumber: 5.0 Consensus size: 31
25290 CCTGAAGGAC
* * *
25300 CAGTCCATA-GATTCAGAAGAACCTAGGTAAT
1 CAGTCCATATG-TCCAGAAGAACATAGGTAAA
*
25331 CAGTCCATATGTCCTGAAGAACATAGGTAAA
1 CAGTCCATATGTCCAGAAGAACATAGGTAAA
*
25362 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCAGAAGAACATAGGTAAA
25393 CAGTCCATATGTCCCA-AAGAACATAGGTAAA
1 CAGTCCATATGT-CCAGAAGAACATAGGTAAA
* *
25424 TAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCAGAAGAACATAGGTAAA
25455 C
1 C
25456 CCTCGACCCT
Statistics
Matches: 113, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
30 2 0.02
31 108 0.96
32 3 0.03
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.21
Consensus pattern (31 bp):
CAGTCCATATGTCCAGAAGAACATAGGTAAA
Found at i:27166 original size:24 final size:23
Alignment explanation
Indices: 27135--27186 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 23
27125 AAATCGCCAA
*
27135 TTTTTTTAAATAATGTCATAATTG
1 TTTTTTTAAATAATAT-ATAATTG
* *
27159 TTTTTTTAAATGATATTTAATTG
1 TTTTTTTAAATAATATATAATTG
27182 TTTTT
1 TTTTT
27187 CAAAAAAATG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 11 0.44
24 14 0.56
ACGTcount: A:0.29, C:0.02, G:0.08, T:0.62
Consensus pattern (23 bp):
TTTTTTTAAATAATATATAATTG
Found at i:28232 original size:5 final size:5
Alignment explanation
Indices: 28222--28493 Score: 418
Period size: 5 Copynumber: 54.8 Consensus size: 5
28212 ATTCTATCAT
28222 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
28272 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TA-ATA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATA-A TATAA
28322 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TAT-A
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
28371 -ATAA TATAA TATAA TATAA TATAA TATAA TAT-A -ATAA TATAA TAT-A
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
28417 TA-ATA TATATA TATAA TATAA TATAA TATAA -ATATA TATATA TATAA
1 TATA-A TATA-A TATAA TATAA TATAA TATAA TATA-A TATA-A TATAA
28464 TATAA TATAA TAT-A TATATA TATATA TATA
1 TATAA TATAA TATAA TATA-A TATA-A TATA
28494 TTAATGGTTT
Statistics
Matches: 254, Mismatches: 0, Indels: 25
0.91 0.00 0.09
Matches are distributed among these distances:
3 4 0.02
4 15 0.06
5 207 0.81
6 28 0.11
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:28494 original size:10 final size:10
Alignment explanation
Indices: 28222--28494 Score: 215
Period size: 8 Copynumber: 31.9 Consensus size: 10
28212 ATTCTATCAT
28222 TATA-ATATA
1 TATATATATA
28231 -ATATA-ATA
1 TATATATATA
28239 TA-ATATA-A
1 TATATATATA
28247 TATA-ATATA
1 TATATATATA
28256 -ATATA-ATA
1 TATATATATA
28264 TA-ATATA-A
1 TATATATATA
28272 TATA-ATATA
1 TATATATATA
28281 -ATATA-ATA
1 TATATATATA
28289 TA-ATATA-A
1 TATATATATA
28297 TATA-ATATA
1 TATATATATA
28306 -ATATA-ATA
1 TATATATATA
28314 -ATATATA-A
1 TATATATATA
28322 TATA-ATATA
1 TATATATATA
28331 -ATATA-ATA
1 TATATATATA
28339 TA-ATATA-A
1 TATATATATA
28347 TATA-ATATA
1 TATATATATA
28356 -ATATA-ATA
1 TATATATATA
28364 TA-ATATA-A
1 TATATATATA
28372 TA-ATATA-A
1 TATATATATA
28380 TATA-ATATA
1 TATATATATA
28389 -ATATA-ATA
1 TATATATATA
28397 TA-ATATA-A
1 TATATATATA
28405 TA-ATATA-A
1 TATATATATA
28413 TATATA-ATA
1 TATATATATA
28422 TATATATATA
1 TATATATATA
28432 -ATATA-ATA
1 TATATATATA
*
28440 TA-ATATAAA
1 TATATATATA
28449 TATATATATA
1 TATATATATA
28459 TATA-ATATA
1 TATATATATA
28468 -ATATA-ATA
1 TATATATATA
28476 TATATATATA
1 TATATATATA
28486 TATATATAT
1 TATATATAT
28495 TAATGGTTTG
Statistics
Matches: 221, Mismatches: 2, Indels: 81
0.73 0.01 0.27
Matches are distributed among these distances:
8 131 0.59
9 65 0.29
10 25 0.11
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (10 bp):
TATATATATA
Found at i:30307 original size:23 final size:23
Alignment explanation
Indices: 30279--30327 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
30269 GTATAATCAC
30279 TAAATTAAAATTTTCAATCTAAT
1 TAAATTAAAATTTTCAATCTAAT
30302 TAAATTAAAATTTTCAATCTAAT
1 TAAATTAAAATTTTCAATCTAAT
30325 TAA
1 TAA
30328 CAGTTTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.43
Consensus pattern (23 bp):
TAAATTAAAATTTTCAATCTAAT
Found at i:30908 original size:14 final size:14
Alignment explanation
Indices: 30889--30927 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
30879 AAACGTACTA
30889 TCTCTCCCTCCCTC
1 TCTCTCCCTCCCTC
30903 TCTCTCCCTCCCTC
1 TCTCTCCCTCCCTC
*
30917 TCTCTTCCTCC
1 TCTCTCCCTCC
30928 ATTCTGGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (14 bp):
TCTCTCCCTCCCTC
Found at i:31032 original size:2 final size:2
Alignment explanation
Indices: 31025--31050 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
31015 AGTCCATCTA
31025 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
31051 TGGCTAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:44195 original size:3 final size:3
Alignment explanation
Indices: 44189--44223 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
44179 AATAACAACA
44189 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
44224 AAAGTTTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:45958 original size:12 final size:13
Alignment explanation
Indices: 45935--45972 Score: 53
Period size: 12 Copynumber: 3.1 Consensus size: 13
45925 GTTTAAAAAA
45935 ATATTATATTATT
1 ATATTATATTATT
45948 ATATT-TATTATT
1 ATATTATATTATT
*
45960 AT-TAATATTATT
1 ATATTATATTATT
45972 A
1 A
45973 GTGTTATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
11 1 0.04
12 17 0.74
13 5 0.22
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
ATATTATATTATT
Found at i:45968 original size:24 final size:24
Alignment explanation
Indices: 45936--45990 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
45926 TTTAAAAAAA
*
45936 TATT-ATATTATTA-TATTTATTAT
1 TATTAATATTATTAGT-GTTATTAT
45959 TATTAATATTATTAGTGTTATTAT
1 TATTAATATTATTAGTGTTATTAT
*
45983 TAATAATA
1 TATTAATA
45991 ATTTTGGTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 4 0.14
24 23 0.82
25 1 0.04
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (24 bp):
TATTAATATTATTAGTGTTATTAT
Found at i:54247 original size:8 final size:9
Alignment explanation
Indices: 54220--54249 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
54210 TAGAAAAAGG
54220 AAAAATGAA
1 AAAAATGAA
54229 AAAAATGAA
1 AAAAATGAA
54238 AAAAAT-AA
1 AAAAATGAA
54246 AAAA
1 AAAA
54250 GAGGGACTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 6 0.29
9 15 0.71
ACGTcount: A:0.83, C:0.00, G:0.07, T:0.10
Consensus pattern (9 bp):
AAAAATGAA
Found at i:54715 original size:13 final size:13
Alignment explanation
Indices: 54697--54772 Score: 59
Period size: 13 Copynumber: 5.8 Consensus size: 13
54687 CATCCATCAC
54697 AGAAAAAAAGGAA
1 AGAAAAAAAGGAA
54710 AGAAAAAAAAAGAGAA
1 AG--AAAAAAAG-GAA
54726 A-AAAAAAA-GAA
1 AGAAAAAAAGGAA
**
54737 A-AAAAAGAAAAAA
1 AGAAAAA-AAGGAA
*
54750 AGGAAAAAAGGAA
1 AGAAAAAAAGGAA
*
54763 AGATAAAAAG
1 AGAAAAAAAG
54773 AAATGAAATT
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
11 9 0.18
12 2 0.04
13 24 0.47
14 4 0.08
15 8 0.16
16 4 0.08
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.01
Consensus pattern (13 bp):
AGAAAAAAAGGAA
Found at i:54721 original size:10 final size:11
Alignment explanation
Indices: 54708--54750 Score: 63
Period size: 11 Copynumber: 4.1 Consensus size: 11
54698 GAAAAAAAGG
54708 AAAGA-AAAAA
1 AAAGAGAAAAA
54718 AAAGAGAAAAA
1 AAAGAGAAAAA
*
54729 AAAAAGAAAAA
1 AAAGAGAAAAA
54740 AAAGA-AAAAA
1 AAAGAGAAAAA
54750 A
1 A
54751 GGAAAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
10 11 0.37
11 19 0.63
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (11 bp):
AAAGAGAAAAA
Found at i:54732 original size:17 final size:16
Alignment explanation
Indices: 54699--54758 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
54689 TCCATCACAG
*
54699 AAAAAAAGG-AAAGAA
1 AAAAAAAGGAAAAAAA
54714 AAAAAAA-GAGAAAAAA
1 AAAAAAAGGA-AAAAAA
* *
54730 AAAAGAA--AAAAAAG
1 AAAAAAAGGAAAAAAA
54744 AAAAAAAGGAAAAAA
1 AAAAAAAGGAAAAAA
54759 GGAAAGATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
14 12 0.32
15 8 0.22
16 17 0.46
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (16 bp):
AAAAAAAGGAAAAAAA
Found at i:54734 original size:23 final size:23
Alignment explanation
Indices: 54697--54755 Score: 77
Period size: 22 Copynumber: 2.6 Consensus size: 23
54687 CATCCATCAC
54697 AGAAAAAAAGGAAAGAAAAAAAAAG
1 AGAAAAAAA-GAAAG-AAAAAAAAG
54722 AGAAAAAAA-AAAGAAAAAAAAG
1 AGAAAAAAAGAAAGAAAAAAAAG
*
54744 A-AAAAAAGGAAA
1 AGAAAAAAAGAAA
54756 AAAGGAAAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
21 6 0.19
22 13 0.41
23 4 0.12
25 9 0.28
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (23 bp):
AGAAAAAAAGAAAGAAAAAAAAG
Found at i:54748 original size:30 final size:29
Alignment explanation
Indices: 54714--54775 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
54704 AAGGAAAGAA
54714 AAAAAAAGAGAAAAAA-AAAAGAAAAAAAAG
1 AAAAAAAG-GAAAAAAGAAAAG-AAAAAAAG
* *
54744 AAAAAAAGGAAAAAAGGAAAGATAAAAAG
1 AAAAAAAGGAAAAAAGAAAAGAAAAAAAG
54773 AAA
1 AAA
54776 TGAAATTGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 17 0.59
30 12 0.41
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (29 bp):
AAAAAAAGGAAAAAAGAAAAGAAAAAAAG
Found at i:54757 original size:10 final size:10
Alignment explanation
Indices: 54708--54758 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
54698 GAAAAAAAGG
*
54708 AAAGAAAAAA
1 AAAGGAAAAA
54718 AAAGAGAAAAAA
1 AAAG-G-AAAAA
*
54730 AAAAGAAAAA
1 AAAGGAAAAA
54740 AAA-G-AAAA
1 AAAGGAAAAA
54748 AAAGGAAAAA
1 AAAGGAAAAA
54758 A
1 A
54759 GGAAAGATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
8 7 0.20
9 2 0.06
10 17 0.49
11 1 0.03
12 8 0.23
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (10 bp):
AAAGGAAAAA
Found at i:54760 original size:8 final size:8
Alignment explanation
Indices: 54700--54763 Score: 50
Period size: 8 Copynumber: 8.4 Consensus size: 8
54690 CCATCACAGA
54700 AAAAAAGG
1 AAAAAAGG
54708 AAAGAAA--
1 AAA-AAAGG
54715 AAAAAAGAG
1 AAAAAAG-G
54724 AAAAAA--
1 AAAAAAGG
54730 AAAAGAA--
1 AAAA-AAGG
*
54737 AAAAAAGA
1 AAAAAAGG
54745 AAAAAAGG
1 AAAAAAGG
54753 AAAAAAGG
1 AAAAAAGG
54761 AAA
1 AAA
54764 GATAAAAAGA
Statistics
Matches: 48, Mismatches: 1, Indels: 14
0.76 0.02 0.22
Matches are distributed among these distances:
6 9 0.19
7 9 0.19
8 21 0.44
9 9 0.19
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (8 bp):
AAAAAAGG
Found at i:54763 original size:17 final size:17
Alignment explanation
Indices: 54697--54763 Score: 64
Period size: 17 Copynumber: 3.8 Consensus size: 17
54687 CATCCATCAC
*
54697 AGAAAAAAAGGAAAGAAA
1 AGAAAAAAAAGAAA-AAA
*
54715 A-AAAAAGAGAAAAAAAAA
1 AGAAAAA-A-AAGAAAAAA
54733 AGAAAAAAAAGAAAAAA
1 AGAAAAAAAAGAAAAAA
* *
54750 AGGAAAAAAGGAAA
1 AGAAAAAAAAGAAA
54764 GATAAAAAGA
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
17 25 0.61
18 7 0.17
19 9 0.22
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (17 bp):
AGAAAAAAAAGAAAAAA
Found at i:56215 original size:19 final size:19
Alignment explanation
Indices: 56191--56228 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
56181 AAAGTTGTAC
56191 CTCGTGGGAATCATGGGAT
1 CTCGTGGGAATCATGGGAT
56210 CTCGTGGGAATCATGGGAT
1 CTCGTGGGAATCATGGGAT
56229 TCAAATTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.16, G:0.37, T:0.26
Consensus pattern (19 bp):
CTCGTGGGAATCATGGGAT
Found at i:57718 original size:40 final size:40
Alignment explanation
Indices: 57670--57923 Score: 427
Period size: 40 Copynumber: 6.3 Consensus size: 40
57660 ATTTAATACG
*
57670 GAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACA
1 GAAGATTTTATCTCATTCAAGATTGTTTTTCCTTGAAACA
*
57710 GAAGATTTTATCTCATTCAAGATTGTTTTTCCTTGAAATA
1 GAAGATTTTATCTCATTCAAGATTGTTTTTCCTTGAAACA
*
57750 GAAGATTTTATATCATTCAAGATTGTTTTTCCTTGAAACA
1 GAAGATTTTATCTCATTCAAGATTGTTTTTCCTTGAAACA
*
57790 GAAGATTTTATCTCATTCAAGATTATTTTTCCTTGAAACA
1 GAAGATTTTATCTCATTCAAGATTGTTTTTCCTTGAAACA
* * *
57830 GAAGATTTTATCTCACTCAAGATTGTTTTTTCTTGAAATA
1 GAAGATTTTATCTCATTCAAGATTGTTTTTCCTTGAAACA
**
57870 GAAGATTTTATCTTGTTCAAGATTGTTTTTCCTTGAAACA
1 GAAGATTTTATCTCATTCAAGATTGTTTTTCCTTGAAACA
57910 GAAGATTTTATCTC
1 GAAGATTTTATCTC
57924 GCTTGAGATA
Statistics
Matches: 198, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 198 1.00
ACGTcount: A:0.30, C:0.14, G:0.13, T:0.43
Consensus pattern (40 bp):
GAAGATTTTATCTCATTCAAGATTGTTTTTCCTTGAAACA
Found at i:57837 original size:20 final size:20
Alignment explanation
Indices: 57775--57838 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
57765 TTCAAGATTG
57775 TTTTTCCTTGAAACAGAAGA
1 TTTTTCCTTGAAACAGAAGA
* **
57795 TTTTATCTCATT--CA-AGATTA
1 TTTT-TC-C-TTGAAACAGAAGA
57815 TTTTTCCTTGAAACAGAAGA
1 TTTTTCCTTGAAACAGAAGA
57835 TTTT
1 TTTT
57839 ATCTCACTCA
Statistics
Matches: 32, Mismatches: 6, Indels: 12
0.64 0.12 0.24
Matches are distributed among these distances:
17 2 0.06
18 1 0.03
19 3 0.09
20 20 0.62
21 3 0.09
22 1 0.03
23 2 0.06
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.44
Consensus pattern (20 bp):
TTTTTCCTTGAAACAGAAGA
Found at i:58053 original size:43 final size:43
Alignment explanation
Indices: 57999--58370 Score: 415
Period size: 43 Copynumber: 8.7 Consensus size: 43
57989 TGAAGAAAAT
* *
57999 CTTG-AGAGACCATCGTGATATGTAGCGGTTTTGTAATGATAAG
1 CTTGAAGAGACCATCGTGATATGTAGGGGTTTT-TAATGACAAG
* *
58042 CTTGAAG-GACCATCGTGATATGTAGGGGTTCTTTGATGAAAAG
1 CTTGAAGAGACCATCGTGATATGTAGGGGTT-TTTAATGACAAG
* * *
58085 CTTG-AGAGACCATTGTGATATGTAGGGGTTTCTTGAGGACAAG
1 CTTGAAGAGACCATCGTGATATGTAGGGGTTT-TTAATGACAAG
* * *
58128 -TTTAAGAAACCATCGTGATATGTAGGGGTTTCTTAATGATAAG
1 CTTGAAGAGACCATCGTGATATGTAGGGGTTT-TTAATGACAAG
58171 CTTGAAG-GACCATCGTGATATGTAGGGGTCTTTT-ATGACAAG
1 CTTGAAGAGACCATCGTGATATGTAGGGGT-TTTTAATGACAAG
*
58213 CTTGAAG-GACCATCGTGATATGTAGGGGTTCTTTAATGACAGG
1 CTTGAAGAGACCATCGTGATATGTAGGGGTT-TTTAATGACAAG
* * * *
58256 CTTG-AGAAACCATCGTGATATGTAGGGGATTCTTGATGACAAA
1 CTTGAAGAGACCATCGTGATATGTAGGGG-TTTTTAATGACAAG
* * *
58299 CTTG-AGAAACCATCGTGATATGTA-GGGTTTCTTGATGAAAAG
1 CTTGAAGAGACCATCGTGATATGTAGGGGTTT-TTAATGACAAG
* *
58341 CTTG-AGGGACCATCATGATATGTAGGGGTT
1 CTTGAAGAGACCATCGTGATATGTAGGGGTT
58371 CCTTGATGAC
Statistics
Matches: 289, Mismatches: 27, Indels: 26
0.85 0.08 0.08
Matches are distributed among these distances:
41 3 0.01
42 79 0.27
43 194 0.67
44 13 0.04
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.31
Consensus pattern (43 bp):
CTTGAAGAGACCATCGTGATATGTAGGGGTTTTTAATGACAAG
Found at i:58140 original size:86 final size:86
Alignment explanation
Indices: 57979--58391 Score: 461
Period size: 86 Copynumber: 4.8 Consensus size: 86
57969 CCTGATTTTC
* * * * *
57979 AGGGGTT-TCTTGAAGAAAATCTTGAGAGACCATCGTGATATGTAGCGGTTT-TGTAATGATAAG
1 AGGGGTTCT-TTGATGAAAAGCTTGAGAGACCATCGTGATATGTAGGGGTTTCT-TGATGACAAG
* *
58042 CTTGAAG-GACCATCGTGATATGT
64 -TTTAAGAAACCATCGTGATATGT
* *
58065 AGGGGTTCTTTGATGAAAAGCTTGAGAGACCATTGTGATATGTAGGGGTTTCTTGAGGACAAGTT
1 AGGGGTTCTTTGATGAAAAGCTTGAGAGACCATCGTGATATGTAGGGGTTTCTTGATGACAAGTT
58130 TAAGAAACCATCGTGATATGT
66 TAAGAAACCATCGTGATATGT
* *
58151 AGGGGTT-TCTTAATGATAAGCTTGA-AGGACCATCGTGATATGTAGGGGTCTT-TT-ATGACAA
1 AGGGGTTCT-TTGATGAAAAGCTTGAGA-GACCATCGTGATATGTAGGGGT-TTCTTGATGACAA
* *
58212 GCTTGAAG-GACCATCGTGATATGT
63 G-TTTAAGAAACCATCGTGATATGT
* * * * * **
58236 AGGGGTTCTTTAATGACAGGCTTGAGAAACCATCGTGATATGTAGGGGATTCTTGATGACAAACT
1 AGGGGTTCTTTGATGAAAAGCTTGAGAGACCATCGTGATATGTAGGGGTTTCTTGATGACAAGTT
*
58301 TGAGAAACCATCGTGATATGT
66 TAAGAAACCATCGTGATATGT
* * * *
58322 AGGGTTTC-TTGATGAAAAGCTTGAGGGACCATCATGATATGTAGGGGTTCCTTGATGACAA--T
1 AGGGGTTCTTTGATGAAAAGCTTGAGAGACCATCGTGATATGTAGGGGTTTCTTGATGACAAGTT
58384 TAAGAAAC
66 TAAGAAAC
58392 TGAGCCTTCG
Statistics
Matches: 281, Mismatches: 34, Indels: 27
0.82 0.10 0.08
Matches are distributed among these distances:
83 8 0.03
84 2 0.01
85 120 0.43
86 147 0.52
87 4 0.01
ACGTcount: A:0.29, C:0.12, G:0.28, T:0.31
Consensus pattern (86 bp):
AGGGGTTCTTTGATGAAAAGCTTGAGAGACCATCGTGATATGTAGGGGTTTCTTGATGACAAGTT
TAAGAAACCATCGTGATATGT
Found at i:58281 original size:128 final size:128
Alignment explanation
Indices: 57999--58382 Score: 501
Period size: 128 Copynumber: 3.0 Consensus size: 128
57989 TGAAGAAAAT
* *
57999 CTTGAGAGACCATCGTGATATGTAGCGGTTT-TGTAATGATAAGCTTGAAGGACCATCGTGATAT
1 CTTGAGAAACCATCGTGATATGTAGGGGTTTCT-TAATGATAAGCTTGAAGGACCATCGTGATAT
* * *
58063 GTAGGGGTTCTTTGATGAAAAGCTTG-AGAGACCATTGTGATATGTAGGGGTT-TCTTGAGGACA
65 GTAGGGG-TCTTTTATGAAAAGCTTGAAG-GACCATCGTGATATGTAGGGGTTCT-TTGATGACA
58126 AG
127 AG
* *
58128 TTTAAGAAACCATCGTGATATGTAGGGGTTTCTTAATGATAAGCTTGAAGGACCATCGTGATATG
1 CTTGAGAAACCATCGTGATATGTAGGGGTTTCTTAATGATAAGCTTGAAGGACCATCGTGATATG
* * *
58193 TAGGGGTCTTTTATGACAAGCTTGAAGGACCATCGTGATATGTAGGGGTTCTTTAATGACAGG
66 TAGGGGTCTTTTATGAAAAGCTTGAAGGACCATCGTGATATGTAGGGGTTCTTTGATGACAAG
* * * * *
58256 CTTGAGAAACCATCGTGATATGTAGGGGATTCTTGATGACAAACTTG-AGAAACCATCGTGATAT
1 CTTGAGAAACCATCGTGATATGTAGGGGTTTCTTAATGATAAGCTTGAAG-GACCATCGTGATAT
* * *
58320 GTA-GGGT-TTCTTGATGAAAAGCTTGAGGGACCATCATGATATGTAGGGGTTCCTTGATGACAA
65 GTAGGGGTCTT-TT-ATGAAAAGCTTGAAGGACCATCGTGATATGTAGGGGTTCTTTGATGACAA
58383 TTAAGAAACT
Statistics
Matches: 226, Mismatches: 23, Indels: 13
0.86 0.09 0.05
Matches are distributed among these distances:
126 2 0.01
127 8 0.04
128 147 0.65
129 68 0.30
130 1 0.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (128 bp):
CTTGAGAAACCATCGTGATATGTAGGGGTTTCTTAATGATAAGCTTGAAGGACCATCGTGATATG
TAGGGGTCTTTTATGAAAAGCTTGAAGGACCATCGTGATATGTAGGGGTTCTTTGATGACAAG
Found at i:58537 original size:90 final size:90
Alignment explanation
Indices: 58384--58731 Score: 558
Period size: 90 Copynumber: 3.9 Consensus size: 90
58374 TGATGACAAT
* *
58384 TAAGAAACTGAGCCTTCGGGGGTTTCTTGATTTTTAAGTCCTTTGGGCCATCCATAAGACCTTCA
1 TAAGAAACTGAGCCTTCGGGGGTTTCTTGATTTTTAAGTCATTCGGGCCATCCATAAGACCTTCA
*
58449 GTGAAGGATGTTTTCAAATGAGATA
66 GTGCAGGATGTTTTCAAATGAGATA
*
58474 TAAGAAACTAAGCCTTCGGGGGTTTCTTGATTTTTAAGTCATTCGGGCCATCCATAAGACCTTCA
1 TAAGAAACTGAGCCTTCGGGGGTTTCTTGATTTTTAAGTCATTCGGGCCATCCATAAGACCTTCA
*
58539 GTGCAGGATGTTTTCAAATGAGATC
66 GTGCAGGATGTTTTCAAATGAGATA
* *
58564 TAAGAAACTGAGCCTTCGAGGGTTTCTTGATTTTTAAGTCATTTGGGCCATCCATAAGACCTTCA
1 TAAGAAACTGAGCCTTCGGGGGTTTCTTGATTTTTAAGTCATTCGGGCCATCCATAAGACCTTCA
* *
58629 GTGCATGATGTTTTCAAATGAGATT
66 GTGCAGGATGTTTTCAAATGAGATA
* *
58654 TAAGAAACTGAGCCTTTGGGGGTTTCTTGATTTTTAAGTCATTCGGG-CAACCATAATG-CCTTC
1 TAAGAAACTGAGCCTTCGGGGGTTTCTTGATTTTTAAGTCATTCGGGCCATCCATAA-GACCTTC
*
58717 AG-GCAGGATGCTTTC
65 AGTGCAGGATGTTTTC
58732 CACATTTTAT
Statistics
Matches: 241, Mismatches: 16, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
88 11 0.05
89 15 0.06
90 215 0.89
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.34
Consensus pattern (90 bp):
TAAGAAACTGAGCCTTCGGGGGTTTCTTGATTTTTAAGTCATTCGGGCCATCCATAAGACCTTCA
GTGCAGGATGTTTTCAAATGAGATA
Found at i:58972 original size:12 final size:13
Alignment explanation
Indices: 58949--58986 Score: 53
Period size: 12 Copynumber: 3.1 Consensus size: 13
58939 GGCTTAAAAA
58949 ATATTATATTATT
1 ATATTATATTATT
58962 ATATT-TATTATT
1 ATATTATATTATT
*
58974 AT-TAATATTATT
1 ATATTATATTATT
58986 A
1 A
58987 GTGTTATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
11 1 0.04
12 17 0.74
13 5 0.22
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
ATATTATATTATT
Found at i:64108 original size:24 final size:24
Alignment explanation
Indices: 64078--64148 Score: 88
Period size: 24 Copynumber: 3.0 Consensus size: 24
64068 ATTTCCGACT
*
64078 TGAATTCTATTATGATTTCTGATC
1 TGAATTCTGTTATGATTTCTGATC
* * * *
64102 TGGATTCTGTTCTGATATCTGTTC
1 TGAATTCTGTTATGATTTCTGATC
*
64126 TGAATTCTGTTTTGATTTCTGAT
1 TGAATTCTGTTATGATTTCTGAT
64149 ATCTCCGTTT
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.18, C:0.13, G:0.17, T:0.52
Consensus pattern (24 bp):
TGAATTCTGTTATGATTTCTGATC
Found at i:64145 original size:12 final size:12
Alignment explanation
Indices: 64090--64146 Score: 62
Period size: 12 Copynumber: 4.8 Consensus size: 12
64080 AATTCTATTA
*
64090 TGATTTCTGATC
1 TGATTTCTGTTC
64102 TGGA-TTCTGTTC
1 T-GATTTCTGTTC
*
64114 TGATATCTGTTC
1 TGATTTCTGTTC
* *
64126 TGAATTCTGTTT
1 TGATTTCTGTTC
64138 TGATTTCTG
1 TGATTTCTG
64147 ATATCTCCGT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
11 2 0.05
12 33 0.89
13 2 0.05
ACGTcount: A:0.14, C:0.14, G:0.19, T:0.53
Consensus pattern (12 bp):
TGATTTCTGTTC
Found at i:64313 original size:2 final size:2
Alignment explanation
Indices: 64306--64344 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
64296 TGGGATGGGG
64306 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
64345 GTTTTAAAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:67043 original size:21 final size:23
Alignment explanation
Indices: 66997--67050 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
66987 CTTTCATTTA
*
66997 AACAAATATAATTAAAATTAAGT
1 AACAAATATAATTAAAATTAACT
* *
67020 AACATATATAATTAAATAACTAACT
1 AACAAATATAATT-AA-AATTAACT
67045 AACAAA
1 AACAAA
67051 ACTATTAGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
23 12 0.48
24 2 0.08
25 11 0.44
ACGTcount: A:0.61, C:0.09, G:0.02, T:0.28
Consensus pattern (23 bp):
AACAAATATAATTAAAATTAACT
Found at i:69942 original size:173 final size:176
Alignment explanation
Indices: 69653--70002 Score: 670
Period size: 173 Copynumber: 2.0 Consensus size: 176
69643 ATCTGAAACT
69653 AGCACATAGTGATGATGAGTAATTCTTCAATTAGATAAGTGAATGAATCTTGAACTTTCTAAGAT
1 AGCACATAGTGATGATGAGTAATTCTTCAATTAGATAAGTGAATGAATCTTGAACTTTCTAAGAT
69718 TAGGGTGAACTCGTAACACACAACTAACCCTTCATCCATCGAAGTCCTCGA-TGTCTACAAAGAG
66 TAGGGTGAACTCGTAACACACAACTAACCCTTCATCCATCGAAGTCCTCGAGTGTCTACAAAGAG
69782 TATATACAATAGTGCATATATG-TTAGCCCTCTTTCT-CAGGATTA
131 TATATACAATAGTGCATATATGTTTAGCCCTCTTTCTCCAGGATTA
69826 AGCACATAGTGATGATGAGTAATTCTTCAATTAGATAAGTGAATGAATCTTGAACTTTCTAAGAT
1 AGCACATAGTGATGATGAGTAATTCTTCAATTAGATAAGTGAATGAATCTTGAACTTTCTAAGAT
69891 TAGGGTGAACTCGTAACACACAACTAACCCTTCATCCATCGAAGTCCTCGATGTGTCTACAAAGA
66 TAGGGTGAACTCGTAACACACAACTAACCCTTCATCCATCGAAGTCCTCGA-GTGTCTACAAAGA
69956 GTATATACAATAGTGCATATATGTTTAGCCCTCTTTCTCCAGGATTA
130 GTATATACAATAGTGCATATATGTTTAGCCCTCTTTCTCCAGGATTA
70003 TAATAAGTGT
Statistics
Matches: 173, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
173 116 0.67
175 35 0.20
176 14 0.08
177 8 0.05
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (176 bp):
AGCACATAGTGATGATGAGTAATTCTTCAATTAGATAAGTGAATGAATCTTGAACTTTCTAAGAT
TAGGGTGAACTCGTAACACACAACTAACCCTTCATCCATCGAAGTCCTCGAGTGTCTACAAAGAG
TATATACAATAGTGCATATATGTTTAGCCCTCTTTCTCCAGGATTA
Found at i:77784 original size:24 final size:25
Alignment explanation
Indices: 77756--77811 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
77746 TGTTTTGAAC
*
77756 TTATTGGTTAAA-CTTGA-CATTTTG
1 TTATTGGATAAATC-TGATCATTTTG
*
77780 TTATTGGATATATCTGATCATTTTG
1 TTATTGGATAAATCTGATCATTTTG
77805 TTATTGG
1 TTATTGG
77812 CAAACTTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 13 0.46
25 15 0.54
ACGTcount: A:0.23, C:0.07, G:0.18, T:0.52
Consensus pattern (25 bp):
TTATTGGATAAATCTGATCATTTTG
Found at i:78066 original size:24 final size:25
Alignment explanation
Indices: 78038--78093 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
78028 TGTTTTGAAC
*
78038 TTATTGGTTAAA-CTTGA-CATTTTG
1 TTATTGGATAAATC-TGATCATTTTG
*
78062 TTATTGGATATATCTGATCATTTTG
1 TTATTGGATAAATCTGATCATTTTG
78087 TTATTGG
1 TTATTGG
78094 CAAACTCTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 13 0.46
25 15 0.54
ACGTcount: A:0.23, C:0.07, G:0.18, T:0.52
Consensus pattern (25 bp):
TTATTGGATAAATCTGATCATTTTG
Found at i:78244 original size:283 final size:282
Alignment explanation
Indices: 77738--78299 Score: 1061
Period size: 283 Copynumber: 2.0 Consensus size: 282
77728 GCTGAGAAGA
77738 AATTATTTTGTTTTGAACTTATTGGTTAAACTTGACATTTTGTTATTGGATATATCTGATCATTT
1 AATTATTTTGTTTTGAACTTATTGGTTAAACTTGACATTTTGTTATTGGATATATCTGATCATTT
* * *
77803 TGTTATTGGCAAACTTTAATATCAGTGTATAATCTCCAATTGAGCCATGTGTATTGATTATTGGA
66 TGTTATTGGCAAACTCTAATATCAATGTATAATCTCCAATTGAGCCATATGTATTGATTATTGGA
77868 TGTCTAATTGCTAATTGAGTTATATGTACTGATTATTGTTAAAAAAATGGAATTATTTTGTTCAT
131 TGTCTAATTGCTAATTGAGTTATATGTACTGATTATTGTTAAAAAAATGGAATTATTTTGTTCAT
*
77933 TGACATTTTGTTCAATGGATAATACTATTTACTGTTGTTTAAGCTTGATATAATTGTTGCATATA
196 TGACATTTTGTTCAATGGATAATACTATTTACTGTTCTTTAAGCTTGATATAATTGTTGCATATA
77998 TTATGTCTTATTTGTTCAATGG
261 TTATGTCTTATTTGTTCAATGG
78020 AATTATTTTGTTTTGAACTTATTGGTTAAACTTGACATTTTGTTATTGGATATATCTGATCATTT
1 AATTATTTTGTTTTGAACTTATTGGTTAAACTTGACATTTTGTTATTGGATATATCTGATCATTT
78085 TGTTATTGGCAAACTCTAATATCAAATGTATAATCTCCAATTGAGCCATATGTATTGATTATTGG
66 TGTTATTGGCAAACTCTAATATC-AATGTATAATCTCCAATTGAGCCATATGTATTGATTATTGG
*
78150 ATGTTTAATTGCTAATTGAGTTATATGTACTGATTATTGTTAAAAAAATGGAATTATTTTGTTCA
130 ATGTCTAATTGCTAATTGAGTTATATGTACTGATTATTGTTAAAAAAATGGAATTATTTTGTTCA
*
78215 TTGACATTTTGTTCAATGGATAATACTATTTATTGTTCTTTAAGCTTGATATAATTGTTGCATAT
195 TTGACATTTTGTTCAATGGATAATACTATTTACTGTTCTTTAAGCTTGATATAATTGTTGCATAT
78280 ATTATGTCTTATTTGTTCAA
260 ATTATGTCTTATTTGTTCAA
78300 ATTATATAAA
Statistics
Matches: 273, Mismatches: 6, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
282 87 0.32
283 186 0.68
ACGTcount: A:0.29, C:0.09, G:0.15, T:0.47
Consensus pattern (282 bp):
AATTATTTTGTTTTGAACTTATTGGTTAAACTTGACATTTTGTTATTGGATATATCTGATCATTT
TGTTATTGGCAAACTCTAATATCAATGTATAATCTCCAATTGAGCCATATGTATTGATTATTGGA
TGTCTAATTGCTAATTGAGTTATATGTACTGATTATTGTTAAAAAAATGGAATTATTTTGTTCAT
TGACATTTTGTTCAATGGATAATACTATTTACTGTTCTTTAAGCTTGATATAATTGTTGCATATA
TTATGTCTTATTTGTTCAATGG
Found at i:78813 original size:27 final size:27
Alignment explanation
Indices: 78783--78855 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 27
78773 AACACACTTG
* * *
78783 ACTCTGACGTCTTCTAGACAATGAGTT
1 ACTCTGACGACCTCCAGACAATGAGTT
* **
78810 ACTCTGATGACCTCCAGATGATGAGTT
1 ACTCTGACGACCTCCAGACAATGAGTT
*
78837 ACTCTGATGACCTCCAGAC
1 ACTCTGACGACCTCCAGAC
78856 GACGAGCACG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (27 bp):
ACTCTGACGACCTCCAGACAATGAGTT
Found at i:80214 original size:20 final size:21
Alignment explanation
Indices: 80189--80240 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 21
80179 CAAAATGCAA
80189 AAATTAAAA-TAACAGT-AGCT
1 AAATTAAAACTAACAGTGA-CT
80209 AAATTAAAAACTAACAGTGACT
1 AAATT-AAAACTAACAGTGACT
80231 AAATTAAAAC
1 AAATTAAAAC
80241 AAAACCAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
20 5 0.17
21 9 0.31
22 14 0.48
23 1 0.03
ACGTcount: A:0.58, C:0.12, G:0.08, T:0.23
Consensus pattern (21 bp):
AAATTAAAACTAACAGTGACT
Found at i:81049 original size:21 final size:21
Alignment explanation
Indices: 81025--81064 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
81015 ATTTACATTG
81025 TTTTTCACTTG-TTTTTCTTTC
1 TTTTT-ACTTGCTTTTTCTTTC
*
81046 TTTTTTCTTGCTTTTTCTT
1 TTTTTACTTGCTTTTTCTT
81065 CAAAAATGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.03, C:0.17, G:0.05, T:0.75
Consensus pattern (21 bp):
TTTTTACTTGCTTTTTCTTTC
Found at i:81154 original size:18 final size:18
Alignment explanation
Indices: 81133--81167 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
81123 AATTCGGTAG
81133 TAGTGGAGCATTCAGTGA
1 TAGTGGAGCATTCAGTGA
*
81151 TAGTGGAGTATTCAGTG
1 TAGTGGAGCATTCAGTG
81168 GCCTATCGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.09, G:0.34, T:0.31
Consensus pattern (18 bp):
TAGTGGAGCATTCAGTGA
Found at i:81467 original size:44 final size:44
Alignment explanation
Indices: 81412--81736 Score: 231
Period size: 44 Copynumber: 7.4 Consensus size: 44
81402 CATTGAAATA
*
81412 TTGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCAGTG
1 TTGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTAAGTG
* * * * * ** * * *
81456 TTGATCTACCTCATTTTGTGAT-AAATTTGAGTGAAATGAAAATG
1 TTGATCCACCTCCTTCTGTGATGGAA-TCGAACGAGATGTAAGTG
* * *
81500 TCGATCCCCCTCCTTCTGTGATGGAATCGAACGAGATGTCAGTG
1 TTGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTAAGTG
* * * * * ** * * *
81544 TTGATCTACCTCATTTTGTGAT-AAATTTGAGTGAAATGAAAATG
1 TTGATCCACCTCCTTCTGTGATGGAA-TCGAACGAGATGTAAGTG
* * * **
81588 TCGATCCCCCTCCTTTTGTGATGGAATCGAACGAGATGTTGGTG
1 TTGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTAAGTG
* * ** * ** *
81632 TTGATCTACCTCCTTCTGTGATAGAATCGAGTGAAATAAAAATG
1 TTGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTAAGTG
* * *
81676 TTGATCCACCTTCTTCTGTGATGGAATCGAACAAGATGTTAGTG
1 TTGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTAAGTG
* * *
81720 CTGATCTACCTTCTTCT
1 TTGATCCACCTCCTTCT
81737 AAAATAGAAT
Statistics
Matches: 201, Mismatches: 76, Indels: 8
0.71 0.27 0.03
Matches are distributed among these distances:
43 4 0.02
44 193 0.96
45 4 0.02
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (44 bp):
TTGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTAAGTG
Found at i:81563 original size:88 final size:88
Alignment explanation
Indices: 81414--81730 Score: 492
Period size: 88 Copynumber: 3.6 Consensus size: 88
81404 TTGAAATATT
81414 GATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCAGTGTTGATCTACCTCATTTTGTGATA
1 GATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCAGTGTTGATCTACCTCATTTTGTGATA
81479 AATTTGAGTGAAATGAAAATGTC
66 AATTTGAGTGAAATGAAAATGTC
*
81502 GATCCCCCTCCTTCTGTGATGGAATCGAACGAGATGTCAGTGTTGATCTACCTCATTTTGTGATA
1 GATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCAGTGTTGATCTACCTCATTTTGTGATA
81567 AATTTGAGTGAAATGAAAATGTC
66 AATTTGAGTGAAATGAAAATGTC
* * ** * *
81590 GATCCCCCTCCTTTTGTGATGGAATCGAACGAGATGTTGGTGTTGATCTACCTCCTTCTGTGATA
1 GATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCAGTGTTGATCTACCTCATTTTGTGATA
* * *
81655 GAA-TCGAGTGAAATAAAAATGTT
66 -AATTTGAGTGAAATGAAAATGTC
* * * *
81678 GATCCACCTTCTTCTGTGATGGAATCGAACAAGATGTTAGTGCTGATCTACCT
1 GATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCAGTGTTGATCTACCT
81731 TCTTCTAAAA
Statistics
Matches: 213, Mismatches: 15, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
88 211 0.99
89 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.33
Consensus pattern (88 bp):
GATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCAGTGTTGATCTACCTCATTTTGTGATA
AATTTGAGTGAAATGAAAATGTC
Found at i:81781 original size:88 final size:87
Alignment explanation
Indices: 81407--81788 Score: 254
Period size: 88 Copynumber: 4.3 Consensus size: 87
81397 CATTCCATTG
* * * * * * * *
81407 AAATATTGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCAGTGTTGATCTACCTCATTT
1 AAATGTTGATCAACC-CTTTCTGTGATGGAATCGAACAAGATGTTAGTGCTGATCTACCTCCTTC
*** * * *
81472 TGTGATA-AATTTGAGTGAAATGA
65 TAAAATAGAA-TCGAGTCAAATAA
* * * * * *
81495 AAATGTCGATC-CCCCTCCTTCTGTGATGGAATCGAACGAGATGTCAGTGTTGATCTACCTCATT
1 AAATGTTGATCAACCCT--TTCTGTGATGGAATCGAACAAGATGTTAGTGCTGATCTACCTCCTT
* *** * * *
81559 TTGTGATA-AATTTGAGTGAAATGA
64 CTAAAATAGAA-TCGAGTCAAATAA
* * * * * *
81583 AAATGTCGATC-CCCCTCCTTTTGTGATGGAATCGAACGAGATGTTGGTGTTGATCTACCTCCTT
1 AAATGTTGATCAACCCT--TTCTGTGATGGAATCGAACAAGATGTTAGTGCTGATCTACCTCCTT
*** *
81647 CTGTGATAGAATCGAGTGAAATAA
64 CTAAAATAGAATCGAGTCAAATAA
* * *
81671 AAATGTTGATCCACCTTCTTCTGTGATGGAATCGAACAAGATGTTAGTGCTGATCTACCTTCTTC
1 AAATGTTGATCAACCCT-TTCTGTGATGGAATCGAACAAGATGTTAGTGCTGATCTACCTCCTTC
81736 TAAAATAGAATCGAG-CAAA-AA
65 TAAAATAGAATCGAGTCAAATAA
*
81757 GATGATGTTGATACAACCCTTTCTGTGATGGA
1 -A-AATGTTGAT-CAACCCTTTCTGTGATGGA
81789 TTAAAATGTC
Statistics
Matches: 261, Mismatches: 26, Indels: 14
0.87 0.09 0.05
Matches are distributed among these distances:
86 3 0.01
87 6 0.02
88 242 0.93
89 10 0.04
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (87 bp):
AAATGTTGATCAACCCTTTCTGTGATGGAATCGAACAAGATGTTAGTGCTGATCTACCTCCTTCT
AAAATAGAATCGAGTCAAATAA
Found at i:81786 original size:176 final size:177
Alignment explanation
Indices: 81421--81788 Score: 433
Period size: 176 Copynumber: 2.1 Consensus size: 177
81411 ATTGATCCAC
* *
81421 CTCC-TTCTGTGATGGAATCGAACGAGATGTCAGTGTTGATCTACCTCATTTTGTGATAAATTTG
1 CTCCTTTCTGTGATGGAATCGAACGAGATGTCAGTGTTGATCTACCTCATTCTGTGATAAATTCG
* * * *
81485 AGTGAAATGAAAATGTCGATCCCCCTCCTTCTGTGATGGAATCGAACGAGATGTCAGTGTTGATC
66 AGTGAAATAAAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACAAGATGTCAGTGCTGATC
* *** * ** * * **
81550 TACCTCATTTTGTGATAAATTTGAGTGAAATGAAAATGTCGATCCCC
131 TACCTCATTCTAAAATAAATTCGAGCAAAAAGAAAATGTCGATACAA
** *
81597 CTCCTTT-TGTGATGGAATCGAACGAGATGTTGGTGTTGATCTACCTCCTTCTGTGATAGAA-TC
1 CTCCTTTCTGTGATGGAATCGAACGAGATGTCAGTGTTGATCTACCTCATTCTGTGATA-AATTC
* * *
81660 GAGTGAAATAAAAATGTTGATCCACCTTCTTCTGTGATGGAATCGAACAAGATGTTAGTGCTGAT
65 GAGTGAAATAAAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACAAGATGTCAGTGCTGAT
** *
81725 CTACCTTC-TTCTAAAATAGAA-TCGAGCAAAAAGATGATGTTGATACAA
130 CTACC-TCATTCTAAAATA-AATTCGAGCAAAAAGAAAATGTCGATACAA
81773 C-CCTTTCTGTGATGGA
1 CTCCTTTCTGTGATGGA
81789 TTAAAATGTC
Statistics
Matches: 161, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
175 5 0.03
176 148 0.92
177 8 0.05
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (177 bp):
CTCCTTTCTGTGATGGAATCGAACGAGATGTCAGTGTTGATCTACCTCATTCTGTGATAAATTCG
AGTGAAATAAAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACAAGATGTCAGTGCTGATC
TACCTCATTCTAAAATAAATTCGAGCAAAAAGAAAATGTCGATACAA
Found at i:81884 original size:121 final size:120
Alignment explanation
Indices: 81670--82003 Score: 463
Period size: 121 Copynumber: 2.8 Consensus size: 120
81660 GAGTGAAATA
* * * *
81670 AAAATGTTGATCCACCTTCTTCTGTGATGGAATCGAACAAGATGTTAGTGCTGATCTACCTTCTT
1 AAAATGTCGATCCA-CTTCTTCTGTGATGGAATCGAACGAGATGTCAGTGCTGATCTACCTCCTT
* * * *
81735 CTAAAATAGAATCGAGCAAAAAGATGATGTTGATACAAC-CCTTTCTGTGATGGATT
65 CTATAATATAATCGAGAAAAAAGTTGATGTTGATACAACTCC-TTCTGTGATGGATT
* *
81791 AAAATGTCGATCCACTTCTTTCTGTGATGAAATCGAACGAGATGTCAGTGGTGATCTACCTCCTT
1 AAAATGTCGATCCACTTC-TTCTGTGATGGAATCGAACGAGATGTCAGTGCTGATCTACCTCCTT
* *
81856 CTGTAATATAATCGAGAAAAAAGTTGATGTTGATCCAACTCCTTCTGTGATGGATT
65 CTATAATATAATCGAGAAAAAAGTTGATGTTGATACAACTCCTTCTGTGATGGATT
* * *
81912 AAAATGTCGATCCACCTCCTTCTGTGATGGAATCAAATGAGATGTCAGTGCTGATCTACCTCCTT
1 AAAATGTCGATCCA-CTTCTTCTGTGATGGAATCGAACGAGATGTCAGTGCTGATCTACCTCCTT
* * *
81977 CTATGATATAATTGAGAAAACAGTTGA
65 CTATAATATAATCGAGAAAAAAGTTGA
82004 ACAATCTCTT
Statistics
Matches: 189, Mismatches: 21, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
120 4 0.02
121 180 0.95
122 5 0.03
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (120 bp):
AAAATGTCGATCCACTTCTTCTGTGATGGAATCGAACGAGATGTCAGTGCTGATCTACCTCCTTC
TATAATATAATCGAGAAAAAAGTTGATGTTGATACAACTCCTTCTGTGATGGATT
Found at i:81950 original size:33 final size:33
Alignment explanation
Indices: 81882--81950 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
81872 AAAAAAGTTG
* *
81882 ATGTTGATCCAACTCCTTCTGTGATGGATTAAA
1 ATGTCGATCCAACTCCTTCTGTGATGGAATAAA
* *
81915 ATGTCGATCCACCTCCTTCTGTGATGGAATCAA
1 ATGTCGATCCAACTCCTTCTGTGATGGAATAAA
81948 ATG
1 ATG
81951 AGATGTCAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (33 bp):
ATGTCGATCCAACTCCTTCTGTGATGGAATAAA
Found at i:82373 original size:36 final size:36
Alignment explanation
Indices: 82249--82366 Score: 173
Period size: 36 Copynumber: 3.2 Consensus size: 36
82239 ATAAGATTTC
* *
82249 TTGTTTCAAGGGAAAACTATCTCAAGTGAGACAAAAT
1 TTGTTTCAAGGG-AAACTGTCTCAAGAGAGACAAAAT
*
82286 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAAC
1 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAAT
* *
82322 TCGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAGT
1 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAAT
*
82358 TTATTTCAA
1 TTGTTTCAA
82367 AAGAAACAGA
Statistics
Matches: 73, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
36 61 0.84
37 12 0.16
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.26
Consensus pattern (36 bp):
TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAAT
Found at i:82444 original size:37 final size:36
Alignment explanation
Indices: 82386--82457 Score: 108
Period size: 37 Copynumber: 2.0 Consensus size: 36
82376 ACTCAGGCTT
*
82386 TTGTTTTGAGAGAAATTGTCTCAAAAGAGACAAAAC
1 TTGTTTTGAGAAAAATTGTCTCAAAAGAGACAAAAC
**
82422 TTGTTTTGAGTAAAAATTGTCTCAAGTGAGACAAAA
1 TTGTTTTGAG-AAAAATTGTCTCAAAAGAGACAAAA
82458 TTCATTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
36 10 0.31
37 22 0.69
ACGTcount: A:0.40, C:0.10, G:0.19, T:0.31
Consensus pattern (36 bp):
TTGTTTTGAGAAAAATTGTCTCAAAAGAGACAAAAC
Found at i:82837 original size:42 final size:40
Alignment explanation
Indices: 82724--82837 Score: 120
Period size: 42 Copynumber: 2.7 Consensus size: 40
82714 GCCCGAAGGT
*
82724 CTTATGAATGGCCCGAAGGACTTATCATCTTACTCAAAAGA
1 CTTAT-AATGGCCCGAAGGACTTATCATCATACTCAAAAGA
* * * * *
82765 CTTATAATTGACCCGAAGGATTTAAGCATCATGCTCGAAAGA
1 CTTATAA-TGGCCCGAAGGACTT-ATCATCATACTCAAAAGA
*
82807 CTTACTGATGGCCCGAAGGACTTACTCATCA
1 CTTA-TAATGGCCCGAAGGACTTA-TCATCA
82838 AGAAACCCTT
Statistics
Matches: 59, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
40 2 0.03
41 19 0.32
42 36 0.61
43 2 0.03
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.26
Consensus pattern (40 bp):
CTTATAATGGCCCGAAGGACTTATCATCATACTCAAAAGA
Found at i:83129 original size:22 final size:22
Alignment explanation
Indices: 83104--83169 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 22
83094 GCGAGACAAA
83104 ATCTTTTGTTTCGAGGGAAACT
1 ATCTTTTGTTTCGAGGGAAACT
** **
83126 ATCTTAAG---CGAGACAAA--
1 ATCTTTTGTTTCGAGGGAAACT
83143 ATCTTTTGTTTCGAGGGAAACT
1 ATCTTTTGTTTCGAGGGAAACT
83165 ATCTT
1 ATCTT
83170 AAGCGAAATA
Statistics
Matches: 31, Mismatches: 8, Indels: 10
0.63 0.16 0.20
Matches are distributed among these distances:
17 6 0.19
19 7 0.23
20 7 0.23
22 11 0.35
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (22 bp):
ATCTTTTGTTTCGAGGGAAACT
Found at i:83704 original size:39 final size:39
Alignment explanation
Indices: 82868--83680 Score: 1161
Period size: 39 Copynumber: 20.9 Consensus size: 39
82858 TTTAGTCTTT
*
82868 TAAAATCTTTTGTTTCGAGCGAAACTATCTCAAGCGAGA
1 TAAAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGA
* *
82907 T-AAATCTTCTGTTTCGAGTGAAAAC-ATCTCAAGCGAGA
1 TAAAATCTTTTGTTTCGAG-GGAAACTATCTCAAGCGAGA
* * * * *
82945 T-AAATCTTCTGCTTCGAGTGAAAAC-GTCTCAAGCAAGA
1 TAAAATCTTTTGTTTCGAG-GGAAACTATCTCAAGCGAGA
82983 TAAAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGA
1 TAAAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGA
**
83022 TAAAATAATTTGTTTC-ATGGGAAACTATCTCAAGCGAGA
1 TAAAATCTTTTGTTTCGA-GGGAAACTATCTCAAGCGAGA
*
83061 TAAAATCTTCTT-TTTCGAGGGAAACTATCTTAAGCGAGA
1 TAAAATCTT-TTGTTTCGAGGGAAACTATCTCAAGCGAGA
* *
83100 CAAAATCTTTTGTTTCGAGGGAAACTATCTTAAGCGAGA
1 TAAAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGA
* * *
83139 CAAAATCTTTTGTTTCGAGGGAAACTATCTTAAGCGAAA
1 TAAAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGA
* *
83178 TAAAATCTTTTGTTTCGAGGGAAACTATCTCGAGCGATA
1 TAAAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGA
* *
83217 TAAAATCTTATGTTTCGAGGGAAACTATCTCAAGCGCGA
1 TAAAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGA
*
83256 TAAAATCTTTTTTTTCGAGGGAAACTATCTCAAGCGAGA
1 TAAAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGA
*
83295 CAAAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGA
1 TAAAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGA
* *
83334 TAAAATCTTATGTTTCAAGGGAAACTATCTCAAGCGAGA
1 TAAAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGA
*
83373 TAAAATCTTTTGTGTCGAGGGAAACTATCTCAAGCGAGA
1 TAAAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGA
* * *
83412 CAAAATCTTTTGTTTTGAGGGAAACTATCTCAAACGAGA
1 TAAAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGA
* *
83451 CAAAATCTTTTGTTTCGAGGGAAACTATCTAAAGCGAGA
1 TAAAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGA
* *
83490 CAAAATCTTTTGTTTCAAGGGAAACTATCTCAAGCGAGA
1 TAAAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGA
* * ** * *
83529 CAAAATCTTTTGTTTCAAATGAAACTATCTGAAGCAAGA
1 TAAAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGA
* *
83568 TAAAATCTTTTGTTTCAAGGGAAACAATCTCAAGCGAGA
1 TAAAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGA
* *
83607 TAAAATCTTTTGTTTCAAGGAAAACTATCTCAAGCGAGA
1 TAAAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGA
*
83646 TAAAATATTTTGTTTCGAGGGAAACTATCTCAAGC
1 TAAAATCTTTTGTTTCGAGGGAAACTATCTCAAGC
83681 TAAACAGAAT
Statistics
Matches: 706, Mismatches: 61, Indels: 14
0.90 0.08 0.02
Matches are distributed among these distances:
38 73 0.10
39 630 0.89
40 3 0.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (39 bp):
TAAAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGA
Found at i:85954 original size:14 final size:15
Alignment explanation
Indices: 85934--85970 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 15
85924 GCAAATGCAA
85934 AGATGCAAAAATGAG
1 AGATGCAAAAATGAG
*
85949 AG-TGC-AAAATGCG
1 AGATGCAAAAATGAG
85962 AGATGCAAA
1 AGATGCAAA
85971 TGCAACAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 4
0.79 0.04 0.17
Matches are distributed among these distances:
13 9 0.47
14 6 0.32
15 4 0.21
ACGTcount: A:0.49, C:0.11, G:0.27, T:0.14
Consensus pattern (15 bp):
AGATGCAAAAATGAG
Found at i:88384 original size:20 final size:20
Alignment explanation
Indices: 88359--88412 Score: 65
Period size: 22 Copynumber: 2.6 Consensus size: 20
88349 CAAAATGCAA
88359 AAATTAAAATAACAGT-AGCT
1 AAATTAAAATAACAGTGA-CT
*
88379 AAATTAAAAACTAATAGTGACT
1 AAATT-AAAA-TAACAGTGACT
88401 AAATTAAAATAA
1 AAATTAAAATAA
88413 AACCAAACAG
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
20 8 0.27
21 8 0.27
22 13 0.43
23 1 0.03
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.26
Consensus pattern (20 bp):
AAATTAAAATAACAGTGACT
Found at i:93865 original size:30 final size:29
Alignment explanation
Indices: 93796--93870 Score: 71
Period size: 30 Copynumber: 2.5 Consensus size: 29
93786 CATAGCTTCT
* *
93796 TATCACATAACTCATGTAACATTTTCGTA
1 TATCACATAGCTCATGTAACATTTTCATA
* *
93825 TAGTCTCATAGCTCATGGTCACA-TTTCATA
1 TA-TCACATAGCTCAT-GTAACATTTTCATA
*
93855 TCATCACATAGGTCAT
1 T-ATCACATAGCTCAT
93871 ATCACATAGT
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
29 2 0.05
30 29 0.78
31 6 0.16
ACGTcount: A:0.31, C:0.23, G:0.11, T:0.36
Consensus pattern (29 bp):
TATCACATAGCTCATGTAACATTTTCATA
Found at i:94045 original size:20 final size:20
Alignment explanation
Indices: 94020--94060 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
94010 ATCATATAAC
94020 TTTTATCACTAGTTCACATA
1 TTTTATCACTAGTTCACATA
* * *
94040 TTTTATCTCTTGTTCTCATA
1 TTTTATCACTAGTTCACATA
94060 T
1 T
94061 GTTAATATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.22, C:0.20, G:0.05, T:0.54
Consensus pattern (20 bp):
TTTTATCACTAGTTCACATA
Found at i:94479 original size:2 final size:2
Alignment explanation
Indices: 94474--94528 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
94464 TATCTTTACT
94474 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
94516 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
94529 CATTTCTCAT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:99025 original size:21 final size:22
Alignment explanation
Indices: 98972--99029 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 22
98962 GGGGCATATA
*
98972 AAAATTGTCCCGAATGACCACAT
1 AAAA-TGTCCCGAAGGACCACAT
98995 AGAAATGTCCCGAAGGACCACAT
1 A-AAATGTCCCGAAGGACCACAT
*
99018 -ATATGTCCCGAA
1 AAAATGTCCCGAA
99030 AGACTGCGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 11 0.34
23 18 0.56
24 3 0.09
ACGTcount: A:0.38, C:0.26, G:0.17, T:0.19
Consensus pattern (22 bp):
AAAATGTCCCGAAGGACCACAT
Found at i:99231 original size:31 final size:29
Alignment explanation
Indices: 99161--99236 Score: 89
Period size: 31 Copynumber: 2.5 Consensus size: 29
99151 CATAGCTTTT
*
99161 TATCACATAGCTCATGTAACATTTTCGTA
1 TATCACATAGCTCATGTAACATTTTCATA
* *
99190 TAGTCTCATAGCTCATGGTCACATTTTCATA
1 TA-TCACATAGCTCAT-GTAACATTTTCATA
*
99221 TGATCACATAGGTCAT
1 T-ATCACATAGCTCAT
99237 ATCACATAGA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
29 2 0.05
30 12 0.31
31 24 0.62
32 1 0.03
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37
Consensus pattern (29 bp):
TATCACATAGCTCATGTAACATTTTCATA
Found at i:100564 original size:20 final size:20
Alignment explanation
Indices: 100541--100589 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
100531 TTAGCTTATG
100541 GTATCGATATTGTTCATACA
1 GTATCGATATTGTTCATACA
100561 GTATCGATATTGTTCATACA
1 GTATCGATATTGTTCATACA
100581 GTATCGATA
1 GTATCGATA
100590 CCCTACTCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (20 bp):
GTATCGATATTGTTCATACA
Found at i:105366 original size:32 final size:31
Alignment explanation
Indices: 105320--105415 Score: 113
Period size: 32 Copynumber: 3.0 Consensus size: 31
105310 ATGAGTCACA
*
105320 ATAGAGTAAATATTACATTCATATAATGCAC
1 ATAGAGTAAGTATTACATTCATATAATGCAC
* *
105351 AGTAGAGTCAGTATTACATTCATATAATGCAT
1 A-TAGAGTAAGTATTACATTCATATAATGCAC
* *
105383 ATCAGAGTTAGTA-TAGCATTCAAATAATGCAC
1 AT-AGAGTAAGTATTA-CATTCATATAATGCAC
105415 A
1 A
105416 ACAAAGCTAA
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
31 4 0.07
32 52 0.93
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.31
Consensus pattern (31 bp):
ATAGAGTAAGTATTACATTCATATAATGCAC
Found at i:105701 original size:40 final size:40
Alignment explanation
Indices: 105657--105734 Score: 147
Period size: 40 Copynumber: 1.9 Consensus size: 40
105647 TTTCCGTTGG
*
105657 CAGGTTAGTAGCATGAGTAGTTCGTTGAGCACCATCGCGA
1 CAGGTTAGTAGCATGAGTAGTTCGTCGAGCACCATCGCGA
105697 CAGGTTAGTAGCATGAGTAGTTCGTCGAGCACCATCGC
1 CAGGTTAGTAGCATGAGTAGTTCGTCGAGCACCATCGC
105735 AGTAGGATTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
CAGGTTAGTAGCATGAGTAGTTCGTCGAGCACCATCGCGA
Found at i:108555 original size:62 final size:59
Alignment explanation
Indices: 108484--108678 Score: 176
Period size: 62 Copynumber: 3.2 Consensus size: 59
108474 AGAAAAAATC
* * *
108484 CATTTTAAAATTTCACTAAAGTTTTAAAAATTATGGAGGAAAGAGAGAATATGAAAGGTTTT
1 CATTTTAAAATTTCACTAAA-TTTTAAAAATTAT-GAGG-AAGAGAGAAGAAGAAAAGTTTT
* * * * *
108546 CATTTTAAAATTTTACTACAATTTTGAAAATTATAGAGGGAAGAAATAAGAGGAAAAGTTTT
1 CATTTTAAAATTTCACTA-AATTTTAAAAATTAT-GA-GGAAGAGAGAAGAAGAAAAGTTTT
* * * * * *
108608 CATTTT-AAATATTCATTAAAATTTTTAAAAGTATGAGTGTAGAGAGAAGAAGAAATGTTTC
1 CATTTTAAAAT-TTCACT-AAATTTTAAAAATTATGAG-GAAGAGAGAAGAAGAAAAGTTTT
108669 CATTTTAAAA
1 CATTTTAAAA
108679 GTATGTGTGT
Statistics
Matches: 109, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
60 1 0.01
61 29 0.27
62 74 0.68
63 5 0.05
ACGTcount: A:0.44, C:0.05, G:0.16, T:0.35
Consensus pattern (59 bp):
CATTTTAAAATTTCACTAAATTTTAAAAATTATGAGGAAGAGAGAAGAAGAAAAGTTTT
Found at i:108741 original size:4 final size:4
Alignment explanation
Indices: 108726--108798 Score: 60
Period size: 4 Copynumber: 18.8 Consensus size: 4
108716 TATGTGTATG
* * * * *
108726 TGTA TATA TGTA TGTA TGTG TGTA TGTG TGTA TG-- TGTG TGTA TGTG
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * *
108772 TGTA TGTA TGTG TGTG TGTG TGTA TGT
1 TGTA TGTA TGTA TGTA TGTA TGTA TGT
108799 GTGTGTGTGT
Statistics
Matches: 56, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
2 2 0.04
4 54 0.96
ACGTcount: A:0.15, C:0.00, G:0.34, T:0.51
Consensus pattern (4 bp):
TGTA
Found at i:108799 original size:8 final size:8
Alignment explanation
Indices: 108679--108818 Score: 96
Period size: 8 Copynumber: 18.2 Consensus size: 8
108669 CATTTTAAAA
108679 GTATGTGT
1 GTATGTGT
*
108687 G--TGTTT
1 GTATGTGT
108693 GTATGTGT
1 GTATGTGT
* * *
108701 CTGTATGT
1 GTATGTGT
108709 GTA--TGT
1 GTATGTGT
108715 GTATGTGT
1 GTATGTGT
* * *
108723 ATGTGTAT
1 GTATGTGT
* *
108731 ATATGTAT
1 GTATGTGT
108739 GTATGTGT
1 GTATGTGT
108747 GTATGTGT
1 GTATGTGT
108755 GTATGTGT
1 GTATGTGT
*
108763 G--TGTAT
1 GTATGTGT
* *
108769 GTGTGTAT
1 GTATGTGT
108777 GTATGTGT
1 GTATGTGT
*
108785 GTGTGTGT
1 GTATGTGT
108793 GTATGTGT
1 GTATGTGT
*
108801 GTGTGTGT
1 GTATGTGT
108809 G-AGTGTGT
1 GTA-TGTGT
108817 GT
1 GT
108819 GTGAGTGTGA
Statistics
Matches: 104, Mismatches: 20, Indels: 15
0.75 0.14 0.11
Matches are distributed among these distances:
6 16 0.15
8 88 0.85
ACGTcount: A:0.13, C:0.01, G:0.36, T:0.50
Consensus pattern (8 bp):
GTATGTGT
Found at i:108807 original size:6 final size:6
Alignment explanation
Indices: 108682--108867 Score: 138
Period size: 6 Copynumber: 31.0 Consensus size: 6
108672 TTTAAAAGTA
* * * * * * * *
108682 TGTGTG TGTTTG TATGTG TCTGTA TGTGTA TGTGTA TGTGTA TGTGTA
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
* * * * * * * *
108730 TATATG TATGTA TGTGTG TATGTG TGTATG TGTGTG TATGTG TGTATG
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
* * * *
108778 TATGTG TGTGTG TGTGTA TGTGTG TGTGTG TGAGTG TGTGTG TGAGTG
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
* * * * * *
108826 TGAGTG TGTGCG TGTGCG TGTGCG TGTGTG CGTGTG CGTGTG
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
108868 CGTGCGCGTG
Statistics
Matches: 148, Mismatches: 32, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 148 1.00
ACGTcount: A:0.10, C:0.03, G:0.40, T:0.46
Consensus pattern (6 bp):
TGTGTG
Found at i:108809 original size:26 final size:26
Alignment explanation
Indices: 108683--108867 Score: 138
Period size: 26 Copynumber: 7.0 Consensus size: 26
108673 TTAAAAGTAT
* *
108683 GTGTGTGTTTGTATGTGTCTGTATGTGT
1 GTGTGTGTGTGTATGTG--TGTGTGTGT
* * * * *
108711 ATGTGTATGTGTATGTGTATATATGT
1 GTGTGTGTGTGTATGTGTGTGTGTGT
* * *
108737 ATGTATGTGTGTATGTGTGTATGTGT
1 GTGTGTGTGTGTATGTGTGTGTGTGT
* *
108763 GTGTATGTGTGTATGTATGTGTGTGT
1 GTGTGTGTGTGTATGTGTGTGTGTGT
* * *
108789 GTGTGTATGTGTGTGTGTGTGAGTGT
1 GTGTGTGTGTGTATGTGTGTGTGTGT
* *
108815 GTGTGTGAGTGTGA-GTGTGTGCGTGT
1 GTGTGTGTGTGT-ATGTGTGTGTGTGT
* * * * *
108841 GCGTGTGCGTGTGTGCGTGTGCGTGT
1 GTGTGTGTGTGTATGTGTGTGTGTGT
108867 G
1 G
108868 CGTGCGCGTG
Statistics
Matches: 130, Mismatches: 25, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
26 116 0.89
28 14 0.11
ACGTcount: A:0.10, C:0.03, G:0.41, T:0.46
Consensus pattern (26 bp):
GTGTGTGTGTGTATGTGTGTGTGTGT
Found at i:108814 original size:20 final size:20
Alignment explanation
Indices: 108682--108867 Score: 121
Period size: 20 Copynumber: 9.4 Consensus size: 20
108672 TTTAAAAGTA
** *
108682 TGTGTGTGTTTGTATGTGTC
1 TGTGTGTGAGTGTATGTGTG
* *
108702 TGTATGTGTATGTGTATGTGTA
1 TGTGTGTG-A-GTGTATGTGTG
* * *
108724 TGTGTAT-ATATGTATGTATG
1 TGTGTGTGA-GTGTATGTGTG
* *
108744 TGTGTATGTGTGTATGTGTG
1 TGTGTGTGAGTGTATGTGTG
* *
108764 TGTATGT--GTGTATGTATG
1 TGTGTGTGAGTGTATGTGTG
*
108782 TGTGTGTGTGTGTATGTGTG
1 TGTGTGTGAGTGTATGTGTG
108802 TGTGTGTGAGTG--TGTGTG
1 TGTGTGTGAGTGTATGTGTG
* * *
108820 TGAGTGTGAGTGTGTGCGTG
1 TGTGTGTGAGTGTATGTGTG
* * * *
108840 TGCGTGTGCGTGTGTGCGTG
1 TGTGTGTGAGTGTATGTGTG
*
108860 TGCGTGTG
1 TGTGTGTG
108868 CGTGCGCGTG
Statistics
Matches: 137, Mismatches: 22, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
18 33 0.24
20 90 0.66
22 14 0.10
ACGTcount: A:0.10, C:0.03, G:0.40, T:0.46
Consensus pattern (20 bp):
TGTGTGTGAGTGTATGTGTG
Found at i:108826 original size:8 final size:8
Alignment explanation
Indices: 108780--108841 Score: 54
Period size: 8 Copynumber: 7.5 Consensus size: 8
108770 TGTGTATGTA
*
108780 TGTGTGTG
1 TGTGTGAG
108788 TGTGTGTA-
1 TGTGTG-AG
*
108796 TGTGTGTG
1 TGTGTGAG
108804 TGTGTGAG
1 TGTGTGAG
*
108812 TGTGTGTG
1 TGTGTGAG
108820 TGAGTGTGAG
1 T--GTGTGAG
*
108830 TGTGTGCG
1 TGTGTGAG
108838 TGTG
1 TGTG
108842 CGTGTGCGTG
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
8 37 0.84
10 7 0.16
ACGTcount: A:0.06, C:0.02, G:0.48, T:0.44
Consensus pattern (8 bp):
TGTGTGAG
Found at i:108868 original size:6 final size:6
Alignment explanation
Indices: 108799--108927 Score: 96
Period size: 6 Copynumber: 20.8 Consensus size: 6
108789 GTGTGTATGT
* * * * *
108799 GTGTGT GTGTGA GTGTGT GTGTGA GTGTGAGT GTGTGC GTGTGC GTGTGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGT--GC GTGTGC GTGTGC GTGTGC
* * * * *
108849 GTGTGTGC GTGTGC GTGTGC GTGCGC GTGCGC GTGCGC GTGCGC GTGCGC
1 --GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
* * * *
108899 GTGCGC GCGTGC GTGCGC GCGTGC GTGTG
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTG
108928 TGTATGTGTG
Statistics
Matches: 106, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
6 95 0.90
8 11 0.10
ACGTcount: A:0.02, C:0.19, G:0.50, T:0.29
Consensus pattern (6 bp):
GTGTGC
Found at i:108943 original size:4 final size:4
Alignment explanation
Indices: 108928--109081 Score: 299
Period size: 4 Copynumber: 38.5 Consensus size: 4
108918 CGTGCGTGTG
*
108928 TGTA TGTG TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
108976 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
109024 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
109072 TGTA TGTA TG
1 TGTA TGTA TG
109082 ATATACATAC
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
4 148 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (4 bp):
TGTA
Found at i:109150 original size:26 final size:26
Alignment explanation
Indices: 109082--109150 Score: 111
Period size: 26 Copynumber: 2.7 Consensus size: 26
109072 TGTATGTATG
*
109082 ATATACATACATACATATCTATATAC
1 ATATACATACATACATGTCTATATAC
109108 ATATACATACATACATGTCTATATAC
1 ATATACATACATACATGTCTATATAC
* *
109134 GTATACATATATACATG
1 ATATACATACATACATG
109151 CATGTATGTA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.43, C:0.17, G:0.04, T:0.35
Consensus pattern (26 bp):
ATATACATACATACATGTCTATATAC
Found at i:109193 original size:15 final size:15
Alignment explanation
Indices: 109173--109224 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
109163 ATATATACAT
109173 ATGTACATGTTCTAC
1 ATGTACATGTTCTAC
* * *
109188 ATGTACATATAC-AT
1 ATGTACATGTTCTAC
109202 ATGTACATGTTCTAC
1 ATGTACATGTTCTAC
109217 ATGTACAT
1 ATGTACAT
109225 ATACATACAA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
14 11 0.37
15 19 0.63
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (15 bp):
ATGTACATGTTCTAC
Found at i:109198 original size:29 final size:29
Alignment explanation
Indices: 109165--109231 Score: 134
Period size: 29 Copynumber: 2.3 Consensus size: 29
109155 TATGTATTAT
109165 ATATACATATGTACATGTTCTACATGTAC
1 ATATACATATGTACATGTTCTACATGTAC
109194 ATATACATATGTACATGTTCTACATGTAC
1 ATATACATATGTACATGTTCTACATGTAC
109223 ATATACATA
1 ATATACATA
109232 CAATCATTCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.37
Consensus pattern (29 bp):
ATATACATATGTACATGTTCTACATGTAC
Found at i:109278 original size:19 final size:19
Alignment explanation
Indices: 109256--109292 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
109246 TGTAAACATG
*
109256 CATCATGCATACATGCATA
1 CATCATACATACATGCATA
*
109275 CATCATATATACATGCAT
1 CATCATACATACATGCAT
109293 GTTTTACATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.38, C:0.24, G:0.08, T:0.30
Consensus pattern (19 bp):
CATCATACATACATGCATA
Found at i:110039 original size:284 final size:280
Alignment explanation
Indices: 109620--110172 Score: 756
Period size: 284 Copynumber: 2.0 Consensus size: 280
109610 CAATTTACTT
* *
109620 CAAACCCTATAAATCACATCATAAATTCATTTCAAACCTGTAAATTATTTCATAATCTCCAAATC
1 CAAACCCTATAAATCACATCATAAATTCATTTCAAACCTATAAATTATATCATAATCTCCAAATC
* *
109685 ATATAAACTTTTGTTCACCAACTTTTTAAACGAATGCAATTTAGTTTATTTTTATATTAATTTCA
66 ATATAAACTTTTGTTCACCAACTTTTTAAACGAATGCAATTTAGTTCATTTTTAGATTAATTTCA
* *
109750 GCTTCACATTTTAAAATTATTTCGATTTGATCCATTAGAGTTGTTTAATTTATTTAAATTTCAGT
131 GCTTCACATTTTAAAATTATTTCAATTTGATCC-GTAGA--TGTTTAATTTATTTAAATTTCA-T
109815 -TTGTAA-TTTCATATTTATTCAATTTAGTCCTTAAAATTATATTTTTATCTAAAATT-ACCCTA
192 CTT-TAACTTTCATATTTATTCAATTTAGTCCTTAAAATTATATTTTTATC-AAAATTGA-CCTA
*
109877 TGACTATTTCTATTTTGTTATTCAATC
254 TAACTATTTCTATTTTGTTATTCAATC
* * * * *
109904 CAAACCCTATAAATTATATCATAAACTTCATTTTAAGCCATATAAATTATATCATAATCTCCTAA
1 CAAACCCTATAAATCACATCATAAA-TTCATTTCAAACC-TATAAATTATATCATAATCTCCAAA
* * * * * *
109969 -C-TCTAAACTTTTGTTTACCAATTTTTTAAATGGATGCAATTTAGTTCATTTTTGGATTAATTT
64 TCATATAAACTTTTGTTCACCAACTTTTTAAACGAATGCAATTTAGTTCATTTTTAGATTAATTT
* ** * *
110032 TAGCTTCATGTTTTACAATTATTTCAATTTGATCCGTAGATGTTTAATTTATTTAAATTTTATCT
129 CAGCTTCACATTTTAAAATTATTTCAATTTGATCCGTAGATGTTTAATTTATTTAAATTTCATCT
* * *
110097 TTAACTTTCATATTTGTTTAATTTAGTCCTTAAAATTATATTTTTATCAAAATTGACTTATAACT
194 TTAACTTTCATATTTATTCAATTTAGTCCTTAAAATTATATTTTTATCAAAATTGACCTATAACT
110162 ATTTCTATTTT
259 ATTTCTATTTT
110173 TTTTTTTTTT
Statistics
Matches: 238, Mismatches: 26, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
280 28 0.12
281 65 0.27
283 4 0.02
284 107 0.45
285 12 0.05
286 22 0.09
ACGTcount: A:0.33, C:0.14, G:0.06, T:0.47
Consensus pattern (280 bp):
CAAACCCTATAAATCACATCATAAATTCATTTCAAACCTATAAATTATATCATAATCTCCAAATC
ATATAAACTTTTGTTCACCAACTTTTTAAACGAATGCAATTTAGTTCATTTTTAGATTAATTTCA
GCTTCACATTTTAAAATTATTTCAATTTGATCCGTAGATGTTTAATTTATTTAAATTTCATCTTT
AACTTTCATATTTATTCAATTTAGTCCTTAAAATTATATTTTTATCAAAATTGACCTATAACTAT
TTCTATTTTGTTATTCAATC
Found at i:113912 original size:2 final size:2
Alignment explanation
Indices: 113905--113936 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
113895 ATCAAATTGA
113905 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
113937 TGATTAAGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:114762 original size:60 final size:60
Alignment explanation
Indices: 114649--114764 Score: 144
Period size: 60 Copynumber: 1.9 Consensus size: 60
114639 ATAATCATAT
* * * ** *
114649 GATCATTTTGTAACTTTTAATAGTTGGAGGACTCAACAAAGCAATGTCCTATAGTTAGAG
1 GATCATTTTATAACTTTTAATAGTTGGAAGACTCAACAAAACAATCACATATAGTTAGAG
* *
114709 GATCATTTTATAACTTTTTATAGTTGGAAGATTCAACAAAACAA-CACAATATAGTT
1 GATCATTTTATAACTTTTAATAGTTGGAAGACTCAACAAAACAATCAC-ATATAGTT
114765 GGATTACCAT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
59 1 0.02
60 46 0.98
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34
Consensus pattern (60 bp):
GATCATTTTATAACTTTTAATAGTTGGAAGACTCAACAAAACAATCACATATAGTTAGAG
Found at i:116157 original size:23 final size:23
Alignment explanation
Indices: 116127--116170 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
116117 TCGACGAGGG
116127 TCGAGAATGATATGATCGTGTCA
1 TCGAGAATGATATGATCGTGTCA
116150 TCGAGAATGATATGATCGTGT
1 TCGAGAATGATATGATCGTGT
116171 GCATGGGACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.30, C:0.11, G:0.27, T:0.32
Consensus pattern (23 bp):
TCGAGAATGATATGATCGTGTCA
Found at i:116229 original size:28 final size:28
Alignment explanation
Indices: 116197--116250 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
116187 ACCCGACCAT
116197 AGGTCGCCAAGCACTCCAAGCGACCTAC
1 AGGTCGCCAAGCACTCCAAGCGACCTAC
* *
116225 AGGTCGCCATGCACTCCCAGCGACCT
1 AGGTCGCCAAGCACTCCAAGCGACCT
116251 TGTAGGTGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.24, C:0.41, G:0.22, T:0.13
Consensus pattern (28 bp):
AGGTCGCCAAGCACTCCAAGCGACCTAC
Found at i:117009 original size:19 final size:16
Alignment explanation
Indices: 116974--117015 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 16
116964 AAACAGAAAT
116974 TTAGTTAATTAGTTTG
1 TTAGTTAATTAGTTTG
116990 TTAGTATAATTATTGTTTG
1 TTAGT-TAATTA--GTTTG
117009 TT-GTTAA
1 TTAGTTAA
117016 GTATATTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 5 0.22
17 9 0.39
18 2 0.09
19 7 0.30
ACGTcount: A:0.26, C:0.00, G:0.17, T:0.57
Consensus pattern (16 bp):
TTAGTTAATTAGTTTG
Found at i:117050 original size:25 final size:25
Alignment explanation
Indices: 117005--117053 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
116995 ATAATTATTG
117005 TTTGTTGTTAAGTATATTATATTAA
1 TTTGTTGTTAAGTATATTATATTAA
117030 TTTGTTAGTTTAAGT-TA-TATATTA
1 TTTGTT-G-TTAAGTATATTATATTA
117054 GATTATAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 13 0.59
26 3 0.14
27 6 0.27
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.57
Consensus pattern (25 bp):
TTTGTTGTTAAGTATATTATATTAA
Found at i:120265 original size:102 final size:104
Alignment explanation
Indices: 120110--120432 Score: 381
Period size: 102 Copynumber: 3.2 Consensus size: 104
120100 TTATAGTAAT
120110 TTGATAGTAATGA-TAG-TAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATT
1 TTGATAGTAATGATTAGTTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGA-T
* *
120173 TAGTAATGATTAATAATGAAATTATTA-TAATTTTAATGA
65 TAATAATGAGTAATAATGAAATTATTATTAATTTTAATGA
120212 TTGATAGT-ATGATTAGTTAATAATGAAATTATTATTAA-TTTTAATGATTTGATAGTAATGATT
1 TTGATAGTAATGATTAGTTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATT
* *
120275 AATGATTAGTAATAATGAAATTATTATTAATTTTAATGA
66 AATAATGAGTAATAATGAAATTATTATTAATTTTAATGA
* * *
120314 TTGATAGTAATGATTAG-TAATGATTAGTAATAATGAAATTATTAATTTTTAATAATTTGATAGT
1 TTGATAGTAATGATTAGTTAAT-A--A-TGA-AAT--TATTATTAATTTTTAATGATTTGATAGT
120378 AATG-------AT-AGTAATAAT--AATTATTATTAATATTTAATGA
59 AATGATTAATAATGAGTAATAATGAAATTATTATTAAT-TTTAATGA
*
120415 TTGATATTAATGATTAGT
1 TTGATAGTAATGATTAGT
120433 AATGATTGAT
Statistics
Matches: 199, Mismatches: 8, Indels: 28
0.85 0.03 0.12
Matches are distributed among these distances:
100 13 0.07
101 52 0.26
102 67 0.34
103 32 0.16
105 1 0.01
106 2 0.01
107 3 0.02
109 8 0.04
110 21 0.11
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.46
Consensus pattern (104 bp):
TTGATAGTAATGATTAGTTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATT
AATAATGAGTAATAATGAAATTATTATTAATTTTAATGA
Found at i:120333 original size:10 final size:10
Alignment explanation
Indices: 120318--120344 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
120308 TAATGATTGA
120318 TAGTAATGAT
1 TAGTAATGAT
120328 TAGTAATGAT
1 TAGTAATGAT
120338 TAGTAAT
1 TAGTAAT
120345 AATGAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.19, T:0.41
Consensus pattern (10 bp):
TAGTAATGAT
Found at i:120347 original size:23 final size:23
Alignment explanation
Indices: 120308--120397 Score: 62
Period size: 23 Copynumber: 4.0 Consensus size: 23
120298 TTATTAATTT
*
120308 TAATGATT-GATAGTAATGATTAG
1 TAATGATTAG-TAATAATGATTAG
*
120331 TAATGATTAGTAATAATGAAATTAT
1 TAATGATTAGTAATAATG--ATTAG
** * *
120356 TAATTTTTAATAAT-TTGA-TAG
1 TAATGATTAGTAATAATGATTAG
*
120377 TAATGA-TAGTAATAATAATTA
1 TAATGATTAGTAATAATGATTA
120398 TTATTAATAT
Statistics
Matches: 50, Mismatches: 12, Indels: 11
0.68 0.16 0.15
Matches are distributed among these distances:
20 6 0.12
21 8 0.16
22 3 0.06
23 15 0.30
24 3 0.06
25 15 0.30
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.42
Consensus pattern (23 bp):
TAATGATTAGTAATAATGATTAG
Found at i:120435 original size:23 final size:23
Alignment explanation
Indices: 120409--120452 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
120399 TATTAATATT
*
120409 TAATGATTGATATTAATGATTAG
1 TAATGATTGATAGTAATGATTAG
*
120432 TAATGATTGATAGTATTGATT
1 TAATGATTGATAGTAATGATT
120453 TACGACTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.45
Consensus pattern (23 bp):
TAATGATTGATAGTAATGATTAG
Found at i:120436 original size:158 final size:160
Alignment explanation
Indices: 120054--120439 Score: 553
Period size: 158 Copynumber: 2.4 Consensus size: 160
120044 TTATAAGATT
* *
120054 TAGTAATGATTAGTAATGATGAAATTATTATTAATATTTAATGATTTTATAGTAATTTGATAGTA
1 TAGTAATGATTAGTAATAAT-AAATTATTATTAATATTTAATGATTTGATAGTAA--TGATAGTA
120119 ATGA-TAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTTAGTAATGAT
63 ATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTTAGTAATGAT
*
120183 TAATAATGAAATTATTATAATTTTAATGATTGA
128 TAATAATGAAATTATTATAATTTTAATAATTGA
120216 TAGT-ATGATTAGTTAATAATGAAATTATTATTAAT-TTTAATGATTTGATAGTAATGAT--TAA
1 TAGTAATGATTAG-TAATAAT-AAATTATTATTAATATTTAATGATTTGATAGTAATGATAGTAA
120277 TGATTAGTAATAATGAAATTATTATTAA-TTTTAATGA-TTGATAGTAATGA-TTAGTAATGATT
64 TGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTTAGTAATGA-T
*
120339 AGTAATAATGAAATTATTA-ATTTTTAATAATTTGA
128 --TAATAATGAAATTATTATAATTTTAATAA-TTGA
*
120374 TAGTAATGA-TAGTAATAAT-AATTATTATTAATATTTAATGA-TTGATATTAATGATTAGTAAT
1 TAGTAATGATTAGTAATAATAAATTATTATTAATATTTAATGATTTGATAGTAATGA-TAGTAAT
120436 GATT
65 GATT
120440 GATAGTATTG
Statistics
Matches: 208, Mismatches: 5, Indels: 26
0.87 0.02 0.11
Matches are distributed among these distances:
155 35 0.17
156 23 0.11
157 31 0.15
158 60 0.29
159 8 0.04
161 26 0.12
162 25 0.12
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.46
Consensus pattern (160 bp):
TAGTAATGATTAGTAATAATAAATTATTATTAATATTTAATGATTTGATAGTAATGATAGTAATG
ATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTTAGTAATGATTAA
TAATGAAATTATTATAATTTTAATAATTGA
Done.