Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003733.1 Hibiscus syriacus cultivar Beakdansim tig00007982_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65128

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10160--10246
29
3.0
29
94
0
147
14
36
32
16
1.89
10257--10338
10
8.3
10
75
17
59
23
50
17
9
1.75
11002--11045
21
2.1
21
91
0
70
29
0
15
54
1.42
14145--14564
60
7.2
59
87
8
571
40
0
12
46
1.44
14323--14491
35
5.4
35
60
28
92
40
0
12
46
1.46
14142--14564
180
2.4
171
90
6
658
40
0
13
46
1.45
14511--14580
25
3.1
22
79
16
63
38
0
11
50
1.39
14446--14560
48
2.3
49
92
2
187
40
0
11
47
1.39
14532--14579
14
3.6
14
81
16
66
35
0
16
47
1.47
16878--16953
30
2.5
31
77
16
86
50
10
1
38
1.45
17130--17169
21
1.9
21
100
0
80
57
15
0
27
1.38
17198--17252
18
3.4
18
65
31
52
52
9
0
38
1.33
17267--17345
38
2.2
37
82
13
101
49
8
0
41
1.34
17366--17430
28
2.3
29
82
10
82
46
15
1
36
1.55
17512--17549
9
4.2
9
83
10
51
65
2
0
31
1.06
17719--17754
11
3.2
11
84
7
54
36
19
22
22
1.95
17999--18078
30
2.8
30
90
7
123
12
15
48
23
1.78
18084--18170
29
3.0
29
82
0
111
16
29
37
16
1.90
22077--22138
7
9.0
7
84
8
74
16
12
12
58
1.64
23209--23234
2
13.0
2
100
0
52
50
0
0
50
1.00
23501--23605
9
10.9
9
75
18
61
78
3
17
0
0.96
23500--23597
6
15.8
6
70
19
60
78
4
16
1
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23495--23548
26
2.0
26
89
3
81
74
7
16
1
1.14
23501--23605
36
2.8
37
81
12
117
78
3
17
0
0.96
23539--23606
29
2.3
29
85
7
84
80
2
16
0
0.82
23500--23606
15
6.9
15
72
13
74
78
3
16
0
0.95
23499--23606
45
2.4
44
79
14
114
78
3
16
0
0.94
23499--23606
20
5.6
19
73
14
87
78
3
16
0
0.94
25559--25816
54
4.8
55
80
10
264
30
10
16
43
1.81
25559--25816
108
2.4
108
81
6
292
30
10
16
43
1.81
25755--25977
54
4.2
53
80
10
224
28
8
18
43
1.80
26399--26892
139
3.6
139
93
1
816
36
18
21
23
1.95
31789--31835
19
2.4
20
85
3
69
63
12
23
0
1.28
38627--38752
51
2.5
50
83
10
166
16
30
28
23
1.96
42610--42638
12
2.4
12
100
0
58
6
31
27
34
1.83
43621--43659
18
2.2
18
90
4
62
66
2
0
30
1.05
43812--43967
50
3.1
51
74
17
139
24
28
32
15
1.95
46592--46683
18
5.2
17
74
13
78
36
1
2
59
1.17
46957--46990
9
3.7
9
88
4
50
50
14
8
26
1.72
48309--48360
26
2.0
25
85
10
70
21
5
0
73
1.04
49902--49927
7
3.7
7
100
0
52
73
0
0
26
0.84
51198--51258
27
2.2
29
85
5
81
29
13
9
47
1.74
52249--52342
39
2.4
39
100
0
188
29
8
19
42
1.80
55904--55965
27
2.3
27
94
0
106
0
29
27
43
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58653--58692
20
2.0
20
90
9
64
52
0
0
47
1.00
59528--59578
18
2.8
18
77
16
52
37
5
0
56
1.23
60559--60658
21
4.8
21
97
0
191
33
20
0
47
1.50
61012--61073
24
2.8
22
77
20
74
19
30
20
29
1.97
61057--61122
19
3.5
19
100
0
132
21
30
16
31
1.95
64595--64630
19
1.9
19
88
5
56
30
22
0
47
1.52

Tables:   1

The End!