genome.fa.s3735.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003735.1 Hibiscus syriacus cultivar Beakdansim tig00007988_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77400

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19878--19972	42	2.2	42	85	7	129	35	21	15	27	1.94
20520--20560	7	5.9	7	91	0	64	43	14	2	39	1.59
20578--20632	19	3.2	19	73	26	68	43	7	10	38	1.68
20673--20711	20	2.1	19	90	9	62	33	2	10	53	1.48
22492--22530	21	2.0	20	85	10	53	35	10	10	43	1.73
23405--24535	93	12.3	93	77	3	956	36	10	16	36	1.84
23405--24535	185	6.1	186	76	5	893	36	10	16	36	1.84
23661--24535	278	3.2	274	80	4	893	36	10	16	36	1.84
24571--26812	93	24.0	93	70	9	918	36	10	16	36	1.83
24330--24778	243	1.8	243	83	4	602	38	12	15	34	1.84
24235--24871	336	1.9	336	80	4	757	37	11	15	35	1.84
24573--25188	278	2.2	279	79	7	619	39	12	14	33	1.84
24571--26080	185	8.2	185	73	9	670	36	10	15	36	1.83
25092--25676	278	2.1	277	79	2	611	35	9	17	37	1.83
26133--26822	185	3.7	183	76	5	581	35	10	17	37	1.83
33026--33075	20	2.5	20	90	0	73	30	14	16	40	1.87
33175--33214	20	2.0	21	95	5	73	32	22	20	25	1.98
33545--33708	82	2.0	82	98	0	319	27	7	22	42	1.80
36297--36334	17	2.2	17	86	9	51	15	23	28	31	1.96
43379--43742	181	2.0	180	92	0	602	25	17	21	35	1.95
43379--43742	90	4.0	90	94	0	602	25	17	21	35	1.95
43886--44462	137	4.2	135	89	3	879	33	18	21	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44445--44526	32	2.6	32	98	0	155	40	13	24	21	1.89
44572--44739	91	1.9	90	89	3	266	37	15	21	25	1.93
44888--44971	3	28.7	3	90	4	136	35	1	0	63	1.03
49169--49219	26	1.9	27	88	4	77	50	29	1	17	1.57
50296--50409	39	2.9	39	75	7	115	20	19	20	40	1.92
52389--52769	185	2.1	184	89	3	452	45	8	3	42	1.52
52899--52936	15	2.5	15	91	0	67	36	7	5	50	1.54
55690--55837	39	3.8	39	75	7	140	18	18	20	41	1.90
55680--55837	78	2.0	79	81	8	189	19	17	22	40	1.91
58068--58110	20	2.2	20	87	8	61	25	16	4	53	1.62
58516--58553	6	6.3	6	96	0	67	13	34	0	52	1.40
58522--58563	18	2.3	18	87	0	57	16	38	0	45	1.48
60448--60510	20	3.3	20	63	24	55	39	14	22	23	1.91
60439--60511	36	2.0	36	100	0	146	38	17	19	24	1.93
61756--61845	2	45.0	2	93	0	153	46	0	3	50	1.18
70193--70250	31	1.9	31	93	6	102	20	31	10	37	1.86

Tables:   1

The End!