genome.fa.s3736.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003736.1 Hibiscus syriacus cultivar Beakdansim tig00007994_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86356

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
833--872	16	2.3	18	83	12	57	42	2	2	52	1.28
4361--4386	13	2.0	13	100	0	52	46	0	0	53	1.00
12544--12598	27	2.0	27	82	3	65	58	5	0	36	1.21
15250--15286	19	1.9	19	94	0	65	32	29	16	21	1.95
15312--15424	20	5.6	20	77	10	122	30	25	19	23	1.98
15349--15439	20	4.4	20	73	13	78	37	26	16	19	1.93
15312--15439	41	3.1	41	89	3	188	34	25	17	22	1.96
15590--15640	22	2.3	22	96	0	93	19	45	15	19	1.86
15758--15813	26	2.2	26	96	0	103	33	3	14	48	1.61
16033--16076	20	2.2	20	87	0	61	20	18	25	36	1.95
17987--18055	20	3.5	19	82	7	84	34	23	23	18	1.96
18185--18252	20	3.4	20	84	8	93	17	19	26	36	1.94
18239--18281	19	2.2	19	87	4	59	11	13	25	48	1.77
18757--18864	21	5.1	21	77	4	110	19	36	19	25	1.95
18757--18879	42	2.9	42	77	9	126	21	35	18	24	1.95
20264--20325	14	4.3	14	75	6	61	37	0	14	48	1.44
20501--20690	20	9.8	20	77	12	143	26	17	22	33	1.96
20500--20690	40	4.9	39	79	8	203	26	17	21	33	1.96
20500--20690	60	3.3	60	78	11	234	26	17	21	33	1.96
20858--20897	12	3.3	12	85	0	53	17	0	25	57	1.40
20861--20895	18	1.9	18	94	0	61	20	0	22	57	1.41
23173--23224	24	2.2	24	82	0	59	36	21	19	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24065--24263	21	9.7	21	77	11	207	22	17	25	35	1.95
24045--24263	62	3.5	62	80	9	277	22	17	25	34	1.96
24030--24263	41	5.7	41	88	4	339	22	17	26	33	1.96
24249--24296	21	2.3	20	78	3	51	31	20	14	33	1.93
24348--24384	19	1.9	19	94	0	65	27	16	24	32	1.96
32464--32490	14	1.9	14	100	0	54	14	11	29	44	1.80
38772--38872	30	3.4	30	100	0	202	27	6	2	62	1.36
44960--45064	9	12.1	8	69	12	57	76	3	4	15	1.10
45070--45148	3	26.3	3	82	10	81	65	5	2	26	1.26
45114--45174	12	4.5	15	86	10	55	68	1	3	26	1.14
46279--46317	16	2.5	16	83	4	53	66	2	0	30	1.05
46325--46601	38	7.6	35	77	13	233	45	8	2	43	1.47
46325--46601	75	3.8	72	79	8	278	45	8	2	43	1.47
46324--46601	36	7.6	38	77	13	226	45	8	2	43	1.47
46976--47637	85	7.8	85	86	1	777	25	17	21	35	1.95
47710--47879	86	2.0	86	88	0	250	25	21	24	29	1.99
67479--67580	35	3.0	34	87	4	145	39	15	4	40	1.69
71960--72073	42	2.7	43	89	4	178	22	15	17	43	1.87
72261--72304	22	2.0	23	86	4	63	45	0	0	54	0.99
72253--72311	31	1.9	31	86	13	86	45	0	0	54	0.99
72257--72329	29	2.4	32	78	17	84	47	1	0	50	1.09
72316--72418	28	3.6	28	75	17	79	46	0	2	50	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72559--72665	16	6.2	17	69	18	53	47	0	2	48	1.22
72815--72865	15	3.4	15	86	0	75	39	13	5	41	1.69
72799--72871	30	2.5	29	90	2	119	32	16	6	43	1.74
79786--79843	23	2.5	22	77	5	62	20	20	24	34	1.97
79775--79837	23	2.8	23	82	2	74	17	25	25	31	1.97
84779--84843	23	2.8	23	77	11	78	16	24	24	33	1.96

Tables:   1

The End!