Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003738.1 Hibiscus syriacus cultivar Beakdansim tig00007997_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76840

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
429--476
19
2.5
20
82
3
62
29
12
6
52
1.63
1328--1388
32
1.9
32
86
3
88
26
24
18
31
1.97
1840--1896
21
2.7
21
94
0
96
21
17
38
22
1.93
5863--5902
21
1.9
21
84
0
53
37
25
10
27
1.88
5952--5997
20
2.3
20
96
0
83
43
26
13
17
1.85
5887--5978
40
2.3
42
77
11
111
43
19
13
23
1.86
5991--6032
19
2.2
19
86
0
57
21
21
19
38
1.94
6533--6594
20
3.0
20
90
7
88
48
19
19
12
1.81
6600--6669
20
3.5
20
90
1
115
11
17
20
51
1.75
8189--8249
21
2.9
21
92
0
104
34
37
14
13
1.85
8364--8413
21
2.4
21
82
0
64
22
14
32
32
1.93
8851--8924
21
3.5
21
85
7
96
21
36
20
21
1.95
8869--8939
21
3.4
20
79
11
72
22
35
19
22
1.96
8817--8939
42
2.9
41
82
7
140
21
34
17
25
1.96
10436--10495
20
3.0
20
87
0
93
43
23
18
15
1.87
10491--10579
20
4.4
20
89
0
142
12
16
23
47
1.81
10722--10836
20
5.8
20
86
0
158
12
17
23
46
1.81
11130--11165
18
2.0
18
94
0
63
16
2
25
55
1.55
13434--13493
24
2.5
24
86
0
84
38
15
16
30
1.89
13450--13501
24
2.2
24
85
0
68
36
19
17
26
1.94
13613--13647
12
2.9
12
91
0
52
14
0
28
57
1.38
14451--14519
20
3.5
20
76
7
77
31
13
23
31
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14432--14520
40
2.2
40
85
0
115
35
12
20
31
1.89
15602--15636
18
1.9
18
94
0
61
8
8
25
57
1.57
15905--15941
3
12.3
3
100
0
74
67
0
0
32
0.91
19425--19473
26
2.0
26
88
8
75
14
16
26
42
1.86
22317--22390
36
2.1
36
100
0
148
44
10
10
33
1.74
22405--22435
2
15.5
2
100
0
62
48
0
0
51
1.00
28423--28454
15
2.1
15
100
0
64
31
34
0
34
1.58
29578--29606
6
4.8
6
100
0
58
31
17
0
51
1.45
31870--31914
22
2.1
22
88
12
67
44
2
0
53
1.13
31877--31985
42
2.6
43
84
9
127
52
0
0
46
1.06
31924--31999
21
3.6
22
72
15
79
52
0
0
47
1.00
32248--32279
16
2.0
16
100
0
64
56
25
12
6
1.59
32344--32388
16
2.8
16
93
0
81
55
22
13
8
1.65
32744--32953
65
3.3
63
81
11
214
29
24
19
26
1.98
32925--32973
19
2.6
19
84
9
57
24
28
20
26
1.99
51942--52028
9
9.6
9
85
12
108
80
0
9
10
0.91
51949--52028
30
2.9
29
89
10
114
81
0
8
10
0.88
51965--52040
10
7.6
10
79
10
75
82
2
6
7
0.91
53378--53989
160
3.8
159
91
3
950
30
18
26
24
1.98
53378--53989
54
11.5
53
92
3
934
30
18
26
24
1.98
57079--57118
20
2.0
20
90
0
62
20
35
25
20
1.96
63436--63470
2
17.5
2
93
0
61
48
0
2
48
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63933--64139
65
3.2
64
80
11
217
30
24
18
26
1.98
68921--68994
14
5.9
14
66
23
56
51
21
12
14
1.75
68920--69005
24
3.6
24
93
0
136
51
22
12
13
1.75
71200--71232
12
2.8
12
90
0
57
45
6
6
42
1.53
75296--75354
21
2.8
21
89
0
82
47
25
5
22
1.71

Tables:   1

The End!