genome.fa.s3739.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003739.1 Hibiscus syriacus cultivar Beakdansim tig00007998_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70406

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6628--6930	144	2.1	146	93	6	517	26	18	22	33	1.96
6898--6942	23	2.0	23	86	0	63	20	26	26	26	1.99
12222--12268	23	2.0	23	100	0	94	34	19	21	25	1.96
16917--16969	22	2.4	23	90	9	92	39	0	3	56	1.17
16917--16966	21	2.3	21	93	3	82	40	0	4	56	1.18
19653--19679	8	3.4	8	100	0	54	33	0	0	66	0.92
21009--21069	24	2.5	24	91	2	104	49	0	8	42	1.32
23217--23254	2	19.0	2	100	0	76	50	0	0	50	1.00
38088--38128	2	20.5	2	100	0	82	51	0	48	0	1.00
39090--39154	25	2.6	25	85	9	80	52	3	1	43	1.26
39761--39853	21	4.6	20	78	4	96	38	18	24	18	1.92
39758--39871	41	2.8	41	93	4	185	42	17	21	18	1.90
39761--39853	20	4.6	20	78	4	96	38	18	24	18	1.92
39864--39916	20	2.7	20	93	0	88	28	28	18	24	1.98
40104--40147	22	2.0	22	95	0	79	20	45	15	18	1.85
40391--40434	20	2.2	20	87	0	61	11	18	20	50	1.77
41753--41797	18	2.5	18	85	0	63	26	42	15	15	1.87
42270--42315	20	2.3	20	84	0	56	36	23	21	17	1.94
42309--42366	14	3.4	18	75	24	63	48	20	18	12	1.80
42325--42375	14	3.4	14	78	19	57	52	21	15	9	1.71
42309--42375	32	2.1	33	91	2	109	49	20	17	11	1.79
44211--44264	14	3.6	14	75	18	54	42	20	25	11	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44193--44285	32	2.8	33	95	3	170	43	19	24	12	1.86
44285--44327	20	2.2	20	87	4	61	16	18	23	41	1.89
44313--44346	14	2.4	14	85	0	50	8	23	20	47	1.78
44468--44504	14	2.6	14	91	0	65	45	24	0	29	1.53
45854--45920	21	3.2	21	68	4	55	19	20	35	23	1.95
45854--45976	42	2.9	41	80	7	113	22	17	36	22	1.95
48015--48070	14	3.6	14	74	21	58	39	25	25	10	1.87
47991--48121	33	3.9	33	92	1	208	39	25	23	11	1.88
47966--48183	19	12.1	19	74	16	178	42	22	22	12	1.87
47966--48183	33	6.1	38	85	8	178	42	22	22	12	1.87
48179--48223	19	2.4	19	92	0	72	8	15	26	48	1.74
48777--48828	20	2.6	20	87	6	70	25	17	28	28	1.97
48839--48932	41	2.3	41	83	3	109	21	24	19	35	1.96
48859--48951	20	4.6	20	75	4	87	19	24	17	38	1.92
48862--48954	41	2.3	41	96	0	168	20	23	16	39	1.91
58047--58071	13	1.9	13	100	0	50	20	24	32	24	1.98
59072--59096	2	12.5	2	100	0	50	48	0	0	52	1.00
59206--59294	44	2.0	43	82	6	108	21	12	11	55	1.68
59258--59462	50	4.1	51	83	6	251	25	14	14	45	1.83
59256--59462	101	2.1	99	83	9	260	25	14	14	45	1.82
60353--60427	2	38.0	2	97	2	143	49	0	0	50	1.00
65284--65328	23	2.0	23	90	0	72	24	26	26	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65296--65607	147	2.1	147	92	4	522	33	21	18	26	1.96
67094--67138	21	2.1	21	91	0	72	17	24	26	31	1.97

Tables:   1

The End!