Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000374.1 Hibiscus syriacus cultivar Beakdansim tig00000683_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72450

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11543--11645
21
4.8
21
90
2
143
25
29
27
18
1.98
16199--16293
27
3.5
27
95
1
163
20
10
22
47
1.80
17607--17669
32
2.0
32
84
12
85
25
1
11
61
1.38
17645--17792
64
2.3
65
78
14
173
29
1
15
54
1.50
20402--20456
11
4.9
11
73
20
51
18
7
0
74
1.04
22836--22880
19
2.2
19
84
11
54
26
4
0
68
1.08
25874--25928
11
4.9
11
73
20
51
18
7
0
74
1.04
30938--31155
97
2.2
97
84
6
264
39
20
11
28
1.87
32112--32179
27
2.5
27
90
2
100
19
8
23
48
1.76
33057--33096
19
2.1
19
95
0
71
5
25
42
27
1.75
33151--33199
20
2.5
20
89
0
71
16
22
34
26
1.95
36862--36953
46
2.0
46
100
0
184
34
13
17
34
1.88
40565--40621
10
5.7
10
89
0
78
42
0
7
50
1.29
40565--40621
4
14.2
4
92
0
78
42
0
7
50
1.29
40565--40621
6
9.5
6
90
0
78
42
0
7
50
1.29
51150--51188
20
2.0
19
85
5
51
46
7
10
35
1.67
53457--53506
14
2.8
20
66
33
58
60
20
4
16
1.52
54441--54513
33
2.2
33
83
9
96
46
5
4
43
1.45
54560--54822
11
24.0
11
69
20
63
49
5
3
41
1.43
54563--54715
9
16.7
9
68
16
57
52
6
1
38
1.38
54620--54732
20
5.9
20
72
21
82
54
8
0
35
1.38
54657--54706
25
2.1
23
92
7
82
58
4
0
38
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54648--54711
17
3.6
17
77
10
58
57
6
0
35
1.24
54805--54843
20
2.0
20
89
0
60
51
12
2
33
1.54
59320--59850
2
271.0
2
63
23
102
46
4
5
43
1.47
59350--59477
51
2.5
51
83
3
152
42
1
2
53
1.23
59453--59518
13
4.5
13
75
25
53
48
4
4
42
1.44
60171--60210
21
1.9
21
89
0
62
45
17
7
30
1.76
60916--60994
20
3.5
23
77
17
78
8
0
11
79
0.93
60917--61003
34
2.6
33
80
10
90
9
1
10
79
0.99
60921--61003
12
7.2
12
70
25
63
9
1
9
79
0.99
60931--61016
45
1.9
44
81
11
104
9
3
10
76
1.12
61882--61949
15
4.6
14
76
15
66
11
4
7
76
1.13
61971--62033
22
2.8
22
86
9
83
15
3
1
79
0.94
61980--62012
17
1.9
17
88
11
50
15
6
0
78
0.93
61971--62036
23
3.0
22
86
8
89
16
3
1
78
0.95
61997--62052
23
2.5
23
79
2
60
23
1
1
73
1.03
62071--62138
17
4.3
15
72
18
57
11
2
8
76
1.12
62071--62144
25
3.0
25
70
16
64
13
2
9
74
1.17
62139--62320
83
2.2
83
87
2
251
24
6
17
51
1.68
62253--62334
32
2.7
31
81
7
96
29
4
21
43
1.73
62363--62472
7
15.9
7
72
16
86
14
0
5
79
0.96
62370--62497
15
8.4
14
73
18
80
14
0
7
77
1.02
62365--62445
31
2.6
30
73
21
78
14
1
6
77
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62364--62464
48
2.1
48
82
10
118
14
0
5
78
0.99
62363--62468
49
2.2
49
80
13
121
15
0
5
78
0.99
62442--62498
25
2.3
25
90
0
87
14
0
8
77
0.99
64975--65050
22
3.5
22
87
3
82
26
13
26
34
1.93
64995--65054
22
2.7
22
92
0
93
26
11
25
36
1.90
68435--68500
33
2.0
33
100
0
132
30
21
15
33
1.94

Tables:   1

The End!