Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003740.1 Hibiscus syriacus cultivar Beakdansim tig00008002_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78313

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9098--9157
13
4.8
13
76
15
72
26
0
1
71
0.95
9098--9162
21
3.3
20
73
20
66
26
0
1
72
0.94
9100--9162
29
2.2
29
83
11
76
25
0
1
73
0.93
9102--9144
16
2.7
16
88
0
59
25
0
2
72
0.97
9409--9465
16
3.5
16
78
7
53
71
1
0
26
0.95
9426--9468
16
2.7
16
88
0
59
72
2
0
25
0.97
9409--9460
21
2.5
21
84
3
61
73
1
0
25
0.94
10204--10308
53
2.0
52
83
8
135
34
6
3
55
1.44
11943--12028
3
28.7
3
95
0
136
32
3
0
63
1.11
12024--12064
15
2.9
14
89
7
64
60
0
0
39
0.96
12024--12064
14
2.9
15
92
7
68
60
0
0
39
0.96
12475--12511
17
2.1
17
90
5
56
70
10
18
0
1.16
24800--24845
7
6.7
7
78
12
51
86
2
10
0
0.64
24795--24846
12
4.2
12
83
11
61
84
1
13
0
0.70
24798--24845
13
3.5
13
85
5
60
87
2
10
0
0.62
24798--24844
19
2.5
20
89
6
71
87
2
10
0
0.63
25173--25218
19
2.6
17
81
15
58
30
6
13
50
1.66
25996--26448
83
5.5
83
93
2
745
26
13
23
36
1.92
27192--27483
116
2.6
115
93
4
495
37
14
19
28
1.91
27385--27563
94
1.9
94
87
2
261
35
17
17
29
1.93
27538--27964
114
3.7
117
85
6
548
38
12
19
29
1.88
27478--27978
114
4.3
117
80
10
496
37
14
18
29
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28190--28260
3
23.7
3
94
0
106
32
4
0
63
1.14
28256--28296
15
2.9
14
89
7
64
60
0
0
39
0.96
28256--28296
14
2.9
15
92
7
68
60
0
0
39
0.96
28690--28732
20
2.2
20
91
0
68
72
9
18
0
1.11
28690--28765
16
4.8
16
72
3
64
71
9
19
0
1.13
31516--31570
21
2.6
21
91
0
83
32
27
23
16
1.96
32013--32074
31
2.0
31
100
0
124
38
6
12
41
1.69
35507--35551
21
2.1
21
92
8
74
40
15
17
26
1.90
38912--38965
22
2.6
20
77
11
63
44
3
1
50
1.30
39696--39735
20
2.0
21
85
5
55
52
2
5
40
1.37
39724--39748
12
2.1
12
100
0
50
52
0
0
48
1.00
42311--42474
54
3.0
54
93
0
274
43
10
14
31
1.79
44247--44296
16
3.2
16
88
2
75
22
22
14
42
1.88
44551--44600
23
2.1
24
92
3
84
48
2
4
46
1.32
45085--45118
18
1.9
17
88
5
50
32
20
0
47
1.51
45645--45669
2
12.5
2
100
0
50
48
0
0
52
1.00
45736--45813
27
2.7
30
75
20
85
43
0
29
26
1.55
45738--45813
20
4.0
20
69
20
72
43
0
30
26
1.55
46157--46221
2
32.5
2
93
0
112
50
3
0
46
1.17
46385--46420
15
2.4
15
90
0
54
38
2
5
52
1.39
46424--46448
2
12.5
2
100
0
50
52
48
0
0
1.00
46448--46524
2
38.0
2
97
2
145
49
1
0
49
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46448--46535
6
14.5
6
93
2
50
51
1
0
47
1.08
46539--46581
18
2.4
18
88
0
59
32
6
2
58
1.38
46549--46588
18
2.2
18
100
0
80
30
5
5
60
1.40
46578--46813
15
17.2
13
66
22
76
43
4
5
47
1.46
46579--46651
28
2.7
26
85
8
83
42
6
6
43
1.58
46590--46658
28
2.6
25
78
17
75
43
7
5
43
1.56
46641--46789
18
8.2
18
71
18
96
44
3
6
46
1.44
46579--46798
94
2.2
100
82
11
301
43
4
5
46
1.48
46598--46813
96
2.2
96
84
11
289
43
4
5
47
1.44
46755--46822
28
2.4
29
78
9
68
41
0
2
55
1.15
49174--49252
40
2.0
40
94
0
140
35
21
7
35
1.82
58424--58502
34
2.3
35
88
2
124
44
24
0
31
1.54
58424--58518
35
2.7
34
76
13
104
42
26
1
30
1.62
58995--59287
148
2.0
148
90
0
460
47
8
6
37
1.59
67992--68030
19
2.0
18
85
14
51
33
0
2
64
1.08
69048--69086
18
2.2
18
95
0
69
17
33
28
20
1.96
70684--70796
23
5.0
23
82
2
129
17
26
23
31
1.97
70692--70796
45
2.3
46
81
3
122
18
26
24
30
1.98
70942--71000
30
1.9
31
86
3
84
30
5
18
45
1.71
77220--77276
24
2.4
24
79
5
62
54
10
12
22
1.68
77232--77281
24
2.1
24
92
0
82
54
8
12
26
1.64

Tables:   1

The End!