genome.fa.s3741.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003741.1 Hibiscus syriacus cultivar Beakdansim tig00008007_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  163650

Tables:   1   

This is table  1  of  1  ( 113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5749--5802	25	2.2	25	83	6	65	25	7	7	59	1.51
8966--9020	25	2.2	25	80	9	67	52	1	0	45	1.11
12159--12523	139	2.6	138	90	0	577	23	21	22	32	1.98
12565--12691	63	2.0	63	93	0	218	37	0	24	37	1.61
12758--12788	14	2.2	14	100	0	62	25	0	16	58	1.38
12896--12968	34	2.1	34	92	0	119	36	6	6	49	1.56
13489--13545	21	2.8	20	81	7	69	29	19	29	21	1.97
14359--14388	14	2.1	14	93	0	51	60	0	0	40	0.97
15115--15182	28	2.3	30	78	14	79	57	2	1	38	1.23
15329--15401	30	2.3	32	81	9	78	54	1	1	42	1.17
18925--18949	4	6.2	4	100	0	50	76	0	24	0	0.80
39587--39620	17	1.9	18	88	5	52	26	26	26	20	1.99
41440--41489	15	3.3	15	76	18	50	12	6	2	80	0.98
41440--41500	16	3.8	15	76	21	52	13	4	1	80	0.95
41451--41497	23	2.1	23	92	4	78	12	2	2	82	0.84
41540--41586	24	2.0	23	87	8	67	14	2	4	78	0.99
41610--41667	3	19.3	3	85	0	80	34	1	0	63	1.04
41699--41768	29	2.4	28	81	11	79	21	11	0	67	1.22
41717--41798	9	8.8	9	73	17	51	17	10	2	69	1.28
44069--44111	20	2.2	20	86	0	59	34	20	13	30	1.92
46726--46765	13	3.0	13	81	3	53	62	0	25	12	1.30
54443--54483	20	2.0	20	85	0	55	31	26	12	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57913--58175	95	2.7	95	88	4	350	31	17	18	33	1.94
60768--60860	36	2.6	35	84	8	107	27	18	13	39	1.89
60971--61073	36	2.9	36	91	0	170	27	20	11	40	1.87
61226--61346	33	3.6	33	85	7	172	40	20	8	30	1.82
62765--62808	22	2.0	23	86	4	63	18	6	4	70	1.27
62869--62915	24	2.0	23	87	8	67	17	2	2	78	0.94
62930--62960	16	1.9	16	93	0	53	32	0	3	64	1.09
62955--63021	3	22.7	3	84	3	73	32	5	0	61	1.20
63043--63156	40	2.9	39	82	12	119	18	8	1	71	1.21
63061--63176	35	3.1	34	75	20	90	18	9	1	70	1.22
64001--64067	3	23.0	3	76	11	68	41	0	0	58	0.98
64962--65026	30	2.2	30	100	0	130	29	12	36	21	1.90
65462--65529	15	4.5	15	73	10	59	26	2	4	66	1.25
65587--65636	2	25.0	2	91	0	82	52	2	0	46	1.12
66416--66467	23	2.3	22	78	15	52	28	3	1	65	1.21
67716--67748	13	2.5	13	100	0	66	39	21	24	15	1.91
70868--70911	10	4.1	11	86	13	65	84	0	15	0	0.63
70868--70918	12	4.2	12	92	5	77	82	0	17	0	0.67
70875--70917	9	4.6	9	86	13	52	86	0	13	0	0.58
70875--70931	7	7.7	7	80	18	53	82	0	17	0	0.67
70868--70914	19	2.3	19	85	14	58	82	0	17	0	0.66
70868--70924	23	2.5	23	86	8	73	82	0	17	0	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72961--73166	100	2.0	101	93	0	351	28	22	19	29	1.98
76238--76354	45	2.6	45	91	0	198	23	23	18	33	1.97
76513--76609	3	33.0	3	76	8	92	40	1	1	57	1.12
76559--76613	17	3.1	17	82	10	67	43	1	0	54	1.10
77823--77865	15	2.8	16	82	6	54	27	4	4	62	1.35
77839--77886	15	3.1	15	81	3	51	25	4	4	66	1.27
82075--82131	25	2.3	25	79	14	64	54	3	8	33	1.48
85113--85218	41	2.6	41	83	5	126	32	14	20	33	1.92
86417--86447	16	1.9	16	93	0	53	61	0	0	38	0.96
88280--88330	26	2.0	26	84	0	66	19	11	0	68	1.20
88372--88423	11	4.6	11	77	17	54	15	3	1	78	0.98
88387--88416	15	1.9	16	93	6	53	13	6	3	76	1.11
88371--88423	27	2.0	27	85	7	72	15	5	1	77	1.04
88842--88866	2	12.5	2	100	0	50	48	0	0	52	1.00
90164--90193	14	2.1	14	100	0	60	33	0	0	66	0.92
94197--94378	95	1.9	95	88	4	278	32	19	18	29	1.96
95734--95892	65	2.5	64	80	3	185	28	16	25	29	1.97
95910--95965	20	2.8	20	97	0	103	21	19	33	25	1.97
96133--96172	20	2.0	21	85	14	57	45	7	5	42	1.54
102344--102383	21	1.9	21	85	10	55	35	10	2	52	1.48
104328--104490	65	2.5	64	82	3	211	26	15	26	30	1.96
104707--104746	20	2.0	21	85	14	57	45	7	5	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105431--105547	36	3.2	36	90	1	180	30	19	11	38	1.87
105469--105632	87	1.9	84	86	3	229	33	18	9	38	1.83
105587--105636	15	2.9	17	71	17	50	34	18	4	44	1.68
105555--105769	36	6.2	36	75	14	200	30	19	11	38	1.87
105432--105677	121	2.0	123	95	1	442	31	18	10	39	1.86
105588--105832	101	2.4	101	91	1	404	28	20	10	40	1.86
105717--105902	65	2.8	64	82	8	207	28	19	12	39	1.88
105877--106002	33	3.8	33	86	8	177	40	17	10	31	1.83
105818--106002	33	5.6	33	76	16	161	36	18	10	34	1.86
107775--107800	6	4.3	6	100	0	52	0	0	15	84	0.62
108588--108632	16	2.8	16	86	3	54	66	0	0	33	0.92
114218--114624	183	2.2	183	93	2	690	39	19	16	24	1.92
123171--123213	16	2.7	16	77	0	50	60	23	4	11	1.50
126337--126375	17	2.4	17	95	4	71	43	0	5	51	1.24
131111--131158	26	2.0	26	88	12	75	62	6	4	27	1.38
136032--136067	18	2.0	18	100	0	72	22	11	22	44	1.84
144626--144799	64	2.7	63	78	13	185	30	18	21	28	1.97
144646--144799	64	2.4	64	84	6	206	31	18	20	29	1.96
144758--144795	18	2.2	18	85	4	51	34	18	21	26	1.96
147181--147278	21	4.4	22	73	19	80	29	20	22	27	1.98
147181--147278	45	2.2	44	84	12	121	29	20	22	27	1.98
153059--153110	19	2.7	19	100	0	104	17	17	30	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153018--153174	83	1.9	83	88	5	237	29	17	22	30	1.97
153144--153183	18	2.3	18	86	4	55	32	17	25	25	1.97
153656--153709	25	2.1	26	89	3	83	40	0	0	59	0.98
153656--153736	25	3.0	25	81	13	74	41	0	3	54	1.18
153698--153784	14	6.2	14	74	24	85	44	1	10	43	1.45
153700--153784	27	3.2	26	85	9	100	44	1	10	43	1.46
153696--153784	11	7.7	11	77	12	58	43	1	10	44	1.45
154020--154063	21	2.1	21	91	0	70	45	4	4	45	1.44
155860--155926	2	34.0	2	96	3	127	50	0	0	49	1.00
155959--155989	14	2.2	14	94	0	53	41	9	0	48	1.36
155953--156020	24	2.9	21	73	23	55	48	4	1	45	1.31
155978--156028	24	2.1	24	89	7	77	56	0	0	43	0.99
158187--158253	31	2.2	31	83	0	80	31	23	10	34	1.89
158420--158488	10	6.1	10	73	23	57	14	11	17	56	1.67
158413--158498	24	3.6	24	93	0	145	15	12	17	54	1.71
159557--159587	16	1.9	16	100	0	62	9	12	19	58	1.62
160312--160336	13	1.9	13	100	0	50	24	28	32	16	1.96
160341--160402	5	12.4	5	80	13	74	4	22	51	20	1.66
160332--160369	17	2.2	17	90	0	58	15	23	42	18	1.89
160344--160403	9	6.0	10	86	11	70	6	21	51	20	1.70
160355--160403	19	2.6	18	87	6	71	4	22	53	20	1.63
160356--160402	14	3.3	14	93	3	76	2	21	55	21	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160399--160440	9	4.3	10	88	11	61	33	28	23	14	1.94
160403--160441	20	1.9	20	94	5	69	35	28	20	15	1.93
161169--161258	42	2.2	42	84	6	112	45	4	3	46	1.39

Tables:   1

The End!