Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003742.1 Hibiscus syriacus cultivar Beakdansim tig00008010_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73284
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:8790 original size:2 final size:2
Alignment explanation
Indices: 8783--8816 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
8773 TTCATACTTG
8783 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8817 AAGACCGGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9131 original size:45 final size:45
Alignment explanation
Indices: 9073--9192 Score: 215
Period size: 45 Copynumber: 2.7 Consensus size: 45
9063 AACTAATTAA
*
9073 TTTTTTATATGCATTAACCATATGTGACTAAAATTAATTAATAAG
1 TTTTTTATGTGCATTAACCATATGTGACTAAAATTAATTAATAAG
9118 TTTTTTATGTGCATTAACCATATGTGACTAAAATTAATTAATAAG
1 TTTTTTATGTGCATTAACCATATGTGACTAAAATTAATTAATAAG
*
9163 -TTTTTATGTGCATTAACCAAATGTGACTAA
1 TTTTTTATGTGCATTAACCATATGTGACTAA
9193 GTAATAGTAA
Statistics
Matches: 73, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
44 29 0.40
45 44 0.60
ACGTcount: A:0.38, C:0.10, G:0.11, T:0.42
Consensus pattern (45 bp):
TTTTTTATGTGCATTAACCATATGTGACTAAAATTAATTAATAAG
Found at i:11344 original size:21 final size:21
Alignment explanation
Indices: 11315--11374 Score: 93
Period size: 21 Copynumber: 2.9 Consensus size: 21
11305 AAAAATAATA
* *
11315 AAAGAAGTACCGATACTCATT
1 AAAGGAGTACCAATACTCATT
11336 AAAGGAGTACCAATACTCATT
1 AAAGGAGTACCAATACTCATT
*
11357 AAAGGAGTATCAATACTC
1 AAAGGAGTACCAATACTC
11375 CCTGTCATGG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.43, C:0.18, G:0.15, T:0.23
Consensus pattern (21 bp):
AAAGGAGTACCAATACTCATT
Found at i:16844 original size:6 final size:6
Alignment explanation
Indices: 16833--16863 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
16823 CCCTAAACTT
16833 TATGTA TATGTA TATGTA TATGTA TATGTA T
1 TATGTA TATGTA TATGTA TATGTA TATGTA T
16864 GCGTGTGATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (6 bp):
TATGTA
Found at i:17744 original size:21 final size:21
Alignment explanation
Indices: 17718--17757 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
17708 TAAAACGCTC
17718 AATAATAATATTTCCGGTAGA
1 AATAATAATATTTCCGGTAGA
* *
17739 AATAATAATGTTTTCGGTA
1 AATAATAATATTTCCGGTA
17758 ATTTTTACCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.07, G:0.15, T:0.38
Consensus pattern (21 bp):
AATAATAATATTTCCGGTAGA
Found at i:21191 original size:16 final size:16
Alignment explanation
Indices: 21172--21205 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
21162 GTGAGAATAT
*
21172 ATTTAAGTGGTAGATG
1 ATTTAAGTGATAGATG
21188 ATTTAAGTGATAGATG
1 ATTTAAGTGATAGATG
21204 AT
1 AT
21206 GTAATTATCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.26, T:0.38
Consensus pattern (16 bp):
ATTTAAGTGATAGATG
Found at i:23019 original size:29 final size:29
Alignment explanation
Indices: 22976--23058 Score: 130
Period size: 29 Copynumber: 2.8 Consensus size: 29
22966 CTCACCTAAC
*
22976 TAAATTGATGTAAGCAATGACATCATTACT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
* *
23006 TAAATGATGTAAGCAATGGCATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
23035 TAAATGATGTAAGCAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
23059 ATTTAGTTTG
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 44 0.92
30 4 0.08
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.31
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:24721 original size:17 final size:16
Alignment explanation
Indices: 24699--24732 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
24689 TAAAAACAGT
24699 AAATAAAAAGATAAATA
1 AAATAAAAAGA-AAATA
*
24716 AAATAAGAAGAAAATA
1 AAATAAAAAGAAAATA
24732 A
1 A
24733 TCCTCACGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (16 bp):
AAATAAAAAGAAAATA
Found at i:25251 original size:24 final size:24
Alignment explanation
Indices: 25207--25256 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
25197 ATAAAGAACC
*
25207 AAAATAAACTTTAATATACCATTA
1 AAAATAAACTTTAATAAACCATTA
*
25231 AAAATAAAGTTTAA-ACAACCATTA
1 AAAATAAACTTTAATA-AACCATTA
25255 AA
1 AA
25257 TCAACCACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 1 0.04
24 22 0.96
ACGTcount: A:0.58, C:0.12, G:0.02, T:0.28
Consensus pattern (24 bp):
AAAATAAACTTTAATAAACCATTA
Found at i:29485 original size:29 final size:29
Alignment explanation
Indices: 29442--29524 Score: 139
Period size: 29 Copynumber: 2.8 Consensus size: 29
29432 CTCACCTAAC
*
29442 TAAATTGATGTAAGCAATGACATCATTACT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
*
29472 TAAATGATGTAAGCAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
29501 TAAATGATGTAAGCAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
29525 ATTTAGTTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
29 46 0.92
30 4 0.08
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.31
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:29830 original size:6 final size:6
Alignment explanation
Indices: 29819--29852 Score: 59
Period size: 6 Copynumber: 5.5 Consensus size: 6
29809 ACAAATGAAT
29819 TTAATA TTAATA TTAATA TTAATA TTTAATA TTA
1 TTAATA TTAATA TTAATA TTAATA -TTAATA TTA
29853 GTACTATTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (6 bp):
TTAATA
Found at i:29836 original size:12 final size:13
Alignment explanation
Indices: 29817--29852 Score: 65
Period size: 12 Copynumber: 2.8 Consensus size: 13
29807 AAACAAATGA
29817 ATTTAATATTAAT
1 ATTTAATATTAAT
29830 A-TTAATATTAAT
1 ATTTAATATTAAT
29842 ATTTAATATTA
1 ATTTAATATTA
29853 GTACTATTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 12 0.55
13 10 0.45
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
ATTTAATATTAAT
Found at i:29888 original size:23 final size:21
Alignment explanation
Indices: 29835--29888 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 21
29825 TTAATATTAA
*
29835 TATTAATATTTAATATTAGTAC
1 TATTAA-ATTTAATATTAGCAC
* *
29857 TATTGAATTTAATATTTTGCATC
1 TATTAAATTTAATA-TTAGCA-C
29880 TATTAAATT
1 TATTAAATT
29889 AATTTGTATA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 8 0.31
22 9 0.35
23 9 0.35
ACGTcount: A:0.37, C:0.06, G:0.06, T:0.52
Consensus pattern (21 bp):
TATTAAATTTAATATTAGCAC
Found at i:36103 original size:2 final size:2
Alignment explanation
Indices: 36098--36130 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
36088 AAATTAAAAT
36098 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
36131 TAAAGAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:37519 original size:19 final size:19
Alignment explanation
Indices: 37479--37517 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
37469 TTACAAACAT
37479 AATAAATGAATTAAACCAA
1 AATAAATGAATTAAACCAA
*
37498 AATAAAT-AATTAGACCAA
1 AATAAATGAATTAAACCAA
37516 AA
1 AA
37518 ATGGTGGTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.64, C:0.10, G:0.05, T:0.21
Consensus pattern (19 bp):
AATAAATGAATTAAACCAA
Found at i:37952 original size:21 final size:22
Alignment explanation
Indices: 37927--37974 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
37917 AAATACACAA
*
37927 TTTTTT-CCTTTAAAAAATGGG
1 TTTTTTGCCTTTAAAAAAAGGG
**
37948 TTTTTTGTTTTTAAAAAAAGGG
1 TTTTTTGCCTTTAAAAAAAGGG
37970 TTTTT
1 TTTTT
37975 CTTTTCCAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.27, C:0.04, G:0.15, T:0.54
Consensus pattern (22 bp):
TTTTTTGCCTTTAAAAAAAGGG
Found at i:37979 original size:21 final size:22
Alignment explanation
Indices: 37927--37979 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
37917 AAATACACAA
* *
37927 TTTTTTC-CTTTAAAAAATGGG
1 TTTTTTCTTTTTAAAAAAAGGG
*
37948 TTTTTTGTTTTTAAAAAAAGGG
1 TTTTTTCTTTTTAAAAAAAGGG
37970 -TTTTTCTTTT
1 TTTTTTCTTTT
37980 CCAGTGGCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 15 0.56
22 12 0.44
ACGTcount: A:0.25, C:0.06, G:0.13, T:0.57
Consensus pattern (22 bp):
TTTTTTCTTTTTAAAAAAAGGG
Found at i:40279 original size:29 final size:29
Alignment explanation
Indices: 40236--40318 Score: 139
Period size: 29 Copynumber: 2.8 Consensus size: 29
40226 CTCACCTAAC
40236 TAAATTGATGTAAGCAATGACATCATTAAT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
*
40266 TAAATGATGTAAGCAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
*
40295 TAAATGATGTAAGTAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
40319 ATTTAGTTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
29 46 0.92
30 4 0.08
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:43705 original size:15 final size:15
Alignment explanation
Indices: 43685--43714 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
43675 CTTTCTCATA
43685 GTTATTGTTGGAATT
1 GTTATTGTTGGAATT
*
43700 GTTATTGTTGTAATT
1 GTTATTGTTGGAATT
43715 CCAGCCTCGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.00, G:0.23, T:0.57
Consensus pattern (15 bp):
GTTATTGTTGGAATT
Found at i:44914 original size:29 final size:29
Alignment explanation
Indices: 44871--44953 Score: 139
Period size: 29 Copynumber: 2.8 Consensus size: 29
44861 CTCACCTAAC
44871 TAAATTGATGTAAGCAATGACATCATTAAT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
*
44901 TAAATGATGTAAGCAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
*
44930 TAAATGATGTAAGTAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
44954 ATTTAGTTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
29 46 0.92
30 4 0.08
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:52477 original size:23 final size:23
Alignment explanation
Indices: 52450--52508 Score: 100
Period size: 23 Copynumber: 2.6 Consensus size: 23
52440 ATTTACTTGC
*
52450 CCAACAGATCAGCCTCAATTACT
1 CCAACGGATCAGCCTCAATTACT
52473 CCAACGGATCAGCCTCAATTACT
1 CCAACGGATCAGCCTCAATTACT
*
52496 CTAACGGATCAGC
1 CCAACGGATCAGC
52509 TTGCTTTGAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.32, C:0.34, G:0.14, T:0.20
Consensus pattern (23 bp):
CCAACGGATCAGCCTCAATTACT
Found at i:54148 original size:2 final size:2
Alignment explanation
Indices: 54141--54186 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
54131 GTTAAAGAGG
54141 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
54183 AT AT
1 AT AT
54187 GAGTTTGAGT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:61460 original size:49 final size:49
Alignment explanation
Indices: 61364--61463 Score: 116
Period size: 48 Copynumber: 2.0 Consensus size: 49
61354 TCACGCTGAG
** *
61364 ATGACGAGTTTCAATAGAAAATATTTTTTATTCGAACTCATAGATCAAA
1 ATGACGAGTTTCAATAGAAAATATTTTTTATTAAAACTCATACATCAAA
*
61413 ATGACGAG-TTCAA-ATAAAATATTTTTTTATTAAAA-TCTATCACATCAAA
1 ATGACGAGTTTCAATAGAAAATA-TTTTTTATTAAAACTC-AT-ACATCAAA
61462 AT
1 AT
61464 AAAAAATTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
47 9 0.20
48 18 0.41
49 17 0.39
ACGTcount: A:0.43, C:0.12, G:0.09, T:0.36
Consensus pattern (49 bp):
ATGACGAGTTTCAATAGAAAATATTTTTTATTAAAACTCATACATCAAA
Found at i:61477 original size:13 final size:13
Alignment explanation
Indices: 61459--61483 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
61449 CTATCACATC
61459 AAAATAAAAAATT
1 AAAATAAAAAATT
61472 AAAATAAAAAAT
1 AAAATAAAAAAT
61484 ATTTTTATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AAAATAAAAAATT
Found at i:62401 original size:3 final size:3
Alignment explanation
Indices: 62393--62422 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
62383 CGAGGGATTG
*
62393 CAA CAA CAA CAA CAA CAA CAA CAA TAA CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
62423 AGGAACTGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.67, C:0.30, G:0.00, T:0.03
Consensus pattern (3 bp):
CAA
Found at i:64381 original size:37 final size:36
Alignment explanation
Indices: 64305--64381 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
64295 TTTTTATATT
*
64305 TTTAATTTTGTAAAAAAATTTATATAAATATTATGAA
1 TTTAATTTTGTAAAAAAA-TTATATAAATATTATCAA
* *
64342 TTTAATTTTTTAAAGAAAA-TATATAAATATTTTACAA
1 TTTAATTTTGTAAA-AAAATTATATAAATATTAT-CAA
64379 TTT
1 TTT
64382 GTAATATTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 13 0.37
37 18 0.51
38 4 0.11
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.48
Consensus pattern (36 bp):
TTTAATTTTGTAAAAAAATTATATAAATATTATCAA
Found at i:68052 original size:21 final size:23
Alignment explanation
Indices: 68026--68074 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
68016 AAAATTCTCA
*
68026 AATCCCT-AAATTTC-AATATTT
1 AATCCCTAAAATTTCAAATATCT
68047 AATCCCTAAAATTTCAAATATCT
1 AATCCCTAAAATTTCAAATATCT
68070 AATCC
1 AATCC
68075 TTTAAATCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 7 0.28
22 7 0.28
23 11 0.44
ACGTcount: A:0.41, C:0.22, G:0.00, T:0.37
Consensus pattern (23 bp):
AATCCCTAAAATTTCAAATATCT
Found at i:68081 original size:23 final size:22
Alignment explanation
Indices: 68026--68081 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
68016 AAAATTCTCA
*
68026 AATCCC-TAAATTTCAATATTT
1 AATCCCTTAAATTTCAATATCT
*
68047 AATCCCTAAAATTTCAAATATCT
1 AATCCCTTAAATTTC-AATATCT
*
68070 AATCCTTTAAAT
1 AATCCCTTAAAT
68082 CCATTGATAG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 6 0.21
22 7 0.24
23 16 0.55
ACGTcount: A:0.41, C:0.20, G:0.00, T:0.39
Consensus pattern (22 bp):
AATCCCTTAAATTTCAATATCT
Found at i:72176 original size:53 final size:53
Alignment explanation
Indices: 72096--72201 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
72086 TTCATAATGT
72096 TGCGAGGAATATGTTCTTTGTTAAGCAACTTCAAAGCCAACAGGTCCACGGGA
1 TGCGAGGAATATGTTCTTTGTTAAGCAACTTCAAAGCCAACAGGTCCACGGGA
72149 TGCGAGGAATATGTTCTTTGTTAAGCAACTTCAAAGCCAACAGGTCCACGGGA
1 TGCGAGGAATATGTTCTTTGTTAAGCAACTTCAAAGCCAACAGGTCCACGGGA
72202 CGCTCGTGCC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (53 bp):
TGCGAGGAATATGTTCTTTGTTAAGCAACTTCAAAGCCAACAGGTCCACGGGA
Found at i:72378 original size:29 final size:29
Alignment explanation
Indices: 72346--72408 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 29
72336 TACTGGAAAC
*
72346 ATTATTAG-GCATTAAAAATGACCGAAAAT
1 ATTATTAGAGC-TAAAAAATGACCGAAAAT
72375 ATTATTAGACGCTAAAAAATGACCGAAAAT
1 ATTATTAGA-GCTAAAAAATGACCGAAAAT
72405 ATTA
1 ATTA
72409 AAACGCATGA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
29 8 0.26
30 21 0.68
31 2 0.06
ACGTcount: A:0.49, C:0.11, G:0.13, T:0.27
Consensus pattern (29 bp):
ATTATTAGAGCTAAAAAATGACCGAAAAT
Done.