genome.fa.s3743.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003743.1 Hibiscus syriacus cultivar Beakdansim tig00008012_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71871

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12960--13000	13	3.0	13	83	13	55	53	14	17	14	1.73
12966--13000	15	2.5	14	86	13	54	57	11	14	17	1.66
15268--15371	30	3.4	31	85	10	142	33	7	13	45	1.72
15355--15409	13	4.2	13	75	13	58	34	3	12	49	1.59
15805--15861	15	3.6	15	73	13	51	35	12	10	42	1.77
15952--15983	16	2.0	17	88	11	50	43	21	21	12	1.86
19709--19760	15	3.2	17	77	22	67	36	19	0	44	1.51
19703--19750	14	3.2	14	76	23	53	37	16	0	45	1.48
24706--24802	29	3.3	29	69	11	79	36	15	12	36	1.85
24655--24791	60	2.3	60	87	5	188	37	13	13	35	1.85
26350--26384	2	17.5	2	100	0	70	51	0	0	48	1.00
26889--26969	37	2.2	37	86	6	119	37	6	4	51	1.48
28061--28085	10	2.5	10	100	0	50	68	0	8	24	1.16
28194--28232	19	2.1	19	85	0	51	41	17	10	30	1.83
30701--30742	22	1.9	22	85	9	59	35	2	0	61	1.09
42938--43016	25	2.9	26	75	20	72	32	0	1	65	1.00
46397--46465	22	3.0	22	75	12	59	69	1	2	26	1.11
49637--49727	38	2.4	39	81	7	114	13	8	35	42	1.75
50210--50258	18	2.8	18	90	3	73	28	30	10	30	1.90
51015--51107	48	1.9	48	91	0	150	32	4	17	46	1.67
51216--51246	16	1.9	16	93	0	53	41	0	12	45	1.42
51571--51609	19	2.1	19	85	9	53	43	5	0	51	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57453--57492	21	1.9	21	84	0	53	22	12	35	30	1.91
60261--60363	36	2.9	35	92	2	161	25	15	15	43	1.86
67788--68026	95	2.5	95	93	5	414	43	10	4	41	1.58

Tables:   1

The End!