Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003746.1 Hibiscus syriacus cultivar Beakdansim tig00008016_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87378

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
517--558
21
2.0
21
86
9
59
38
0
2
59
1.10
3110--3302
93
2.0
96
86
6
270
26
20
25
26
1.99
3967--4047
37
2.1
37
84
9
99
40
17
12
29
1.86
4171--4259
34
2.7
33
82
6
99
35
10
20
33
1.86
4346--4430
32
2.7
32
81
0
98
32
22
14
30
1.93
9745--9803
20
2.8
21
87
7
75
18
27
32
22
1.97
21664--21737
32
2.5
29
77
14
78
47
4
6
41
1.49
21724--21779
17
3.4
17
68
22
55
58
0
7
33
1.25
21723--21791
33
2.1
34
97
2
131
60
0
5
33
1.20
40080--40160
3
27.0
3
94
0
144
32
1
0
66
0.99
41510--41551
16
2.7
15
79
17
50
23
2
4
69
1.20
52985--53009
12
2.1
12
100
0
50
88
0
12
0
0.53
54139--54797
82
8.2
82
90
6
1023
28
13
22
35
1.93
54139--54802
163
4.1
164
91
6
1042
28
14
21
35
1.93
55600--56123
113
4.7
113
84
7
668
37
13
19
29
1.90
56392--56488
3
33.0
3
87
4
144
31
3
0
64
1.09
56487--56521
12
3.0
12
87
4
54
62
2
0
34
1.10
57830--57858
14
2.0
15
93
6
51
20
3
6
68
1.27
60838--60872
18
1.9
18
88
0
52
34
2
0
62
1.10
61394--61440
23
2.1
22
84
4
58
65
10
8
14
1.45
61803--61837
18
1.9
18
88
0
52
51
0
8
40
1.33
67728--68123
61
6.6
60
72
14
300
21
15
23
39
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67768--67872
53
2.0
53
94
0
183
20
15
22
40
1.90
67830--68171
40
8.4
40
82
5
389
21
15
22
40
1.91
67830--67896
19
3.4
19
70
8
62
20
14
20
43
1.88
67734--68163
21
21.5
20
67
15
178
21
16
23
39
1.92
67819--68164
122
2.8
123
85
4
459
21
15
23
40
1.91
68112--68176
21
3.2
21
69
6
62
20
23
21
35
1.96
68581--68638
19
2.8
21
74
15
57
37
27
3
31
1.73
70521--70556
9
4.0
9
92
0
54
44
0
55
0
0.99
74321--74370
24
2.1
24
88
0
73
26
20
20
34
1.96
76058--76101
23
1.9
23
86
9
63
43
13
11
31
1.80
78046--78102
30
1.9
30
86
10
82
59
7
12
21
1.56
78042--78121
29
2.7
30
77
12
85
56
8
15
20
1.65
79046--79087
21
2.0
21
85
0
57
4
16
7
71
1.26

Tables:   1

The End!