genome.fa.s3747.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003747.1 Hibiscus syriacus cultivar Beakdansim tig00008019_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108156

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
936--996	30	2.0	30	96	0	113	32	9	16	40	1.81
5936--5966	5	6.2	5	92	0	53	0	38	38	22	1.54
9476--9504	2	14.5	2	100	0	58	51	0	48	0	1.00
11326--11351	2	13.0	2	100	0	52	50	0	0	50	1.00
11493--11526	4	8.2	4	93	6	59	52	23	0	23	1.47
16291--16343	26	2.0	26	100	0	106	33	22	3	39	1.72
21984--22040	29	2.0	29	93	6	98	12	35	31	21	1.90
23593--23707	53	2.2	53	82	0	140	48	9	12	29	1.72
30394--30505	23	4.8	23	76	10	102	28	10	14	46	1.78
38256--38338	36	2.3	36	83	10	107	12	19	37	31	1.88
38376--38434	6	9.8	6	90	0	82	28	30	20	20	1.97
40032--40099	2	34.0	2	100	0	136	50	0	0	50	1.00
41267--41321	21	2.7	21	83	5	60	36	1	3	58	1.26
43402--43438	20	1.9	19	89	10	58	45	10	24	18	1.81
45906--46054	3	49.7	3	87	0	217	34	4	0	61	1.20
51131--51202	35	2.1	35	97	0	135	19	11	26	43	1.84
52786--52859	21	3.6	21	68	3	69	20	16	25	37	1.93
52811--52902	20	4.6	20	79	2	103	13	18	22	45	1.84
52782--52879	41	2.4	41	91	0	151	18	17	23	40	1.91
52976--53000	6	4.2	6	100	0	50	36	48	16	0	1.46
53166--53222	25	2.3	25	96	0	105	49	22	7	21	1.73
53523--53570	6	8.0	6	100	0	96	0	16	50	33	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54901--54959	3	20.0	3	85	3	75	28	0	1	69	0.98
63949--64289	83	4.1	83	97	0	592	27	12	21	37	1.90
67685--68585	76	11.9	76	96	0	1633	22	20	21	36	1.95
68748--68806	3	20.0	3	85	3	75	28	0	1	69	0.98
74685--74741	22	2.6	22	76	15	64	61	0	1	36	1.07
75437--75474	19	2.0	19	100	0	76	31	36	21	10	1.87
75489--75559	32	2.2	32	92	0	115	30	30	29	8	1.87
75547--75641	29	3.3	29	95	0	163	13	30	32	23	1.93
75668--75782	49	2.4	49	88	8	177	20	37	19	22	1.94
75994--76032	16	2.3	18	86	8	55	38	0	5	56	1.22
76137--76227	46	1.9	48	85	12	127	40	0	10	48	1.38
76254--76306	12	4.3	12	81	11	63	30	0	16	52	1.44
76287--76363	34	2.3	33	82	10	95	41	0	11	46	1.40
76404--76450	16	3.0	16	84	9	53	29	0	10	59	1.31
76425--76455	15	2.1	14	94	5	53	38	0	6	54	1.26
78602--78634	17	1.9	17	100	0	66	48	9	6	36	1.60
78601--78651	14	3.4	14	82	12	57	45	7	7	39	1.62
78629--78672	21	2.1	21	86	0	61	45	4	9	40	1.56
78639--78672	11	3.2	11	83	8	52	47	5	8	38	1.59
78619--78683	14	5.2	13	76	17	50	46	7	7	38	1.61
78769--78861	11	7.9	12	72	12	68	49	4	2	44	1.34
78772--78860	23	3.8	23	75	7	90	49	4	2	43	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78828--79040	12	15.2	13	69	23	82	44	10	1	43	1.49
78822--79040	26	8.9	25	71	19	115	44	10	1	43	1.48
78822--79040	98	2.2	98	96	1	404	44	10	1	43	1.48
79036--79062	7	3.9	7	100	0	54	14	14	14	55	1.70
79135--79182	14	3.6	14	81	16	66	47	16	0	35	1.47
79154--79505	60	6.3	49	73	22	193	46	13	0	40	1.43
79203--79632	60	7.2	60	94	3	769	45	14	0	39	1.45
82686--82739	28	1.9	28	96	0	99	57	12	0	29	1.36
82682--82746	28	2.3	28	84	10	96	55	10	0	33	1.35
82716--82764	21	2.3	21	85	3	71	53	16	0	30	1.43
83376--83492	20	5.8	20	71	16	82	11	17	47	23	1.79
83376--83478	30	3.4	30	89	0	170	10	18	47	23	1.79
83456--83488	10	3.3	10	100	0	66	9	18	51	21	1.73
83502--83613	29	3.9	29	98	0	215	8	27	44	19	1.79
88659--88710	26	2.0	26	96	0	95	26	5	53	13	1.62
91032--91291	126	2.1	126	98	0	502	40	8	20	30	1.83
91958--92002	21	2.1	22	87	4	65	26	24	26	22	2.00
92032--92080	25	2.0	25	95	0	89	16	18	30	34	1.93
95879--95930	27	2.0	27	88	3	79	34	13	19	32	1.90
97524--97736	36	5.9	36	86	4	304	37	19	23	19	1.94
97519--97736	72	3.0	72	94	0	382	38	19	23	18	1.93
97787--97835	26	1.9	26	87	4	73	36	10	20	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98765--98863	47	2.1	46	83	1	117	32	11	9	47	1.70
99510--99564	21	2.6	21	91	0	83	18	23	27	30	1.97
99509--99577	21	3.3	21	83	0	75	20	24	23	31	1.98
99574--100060	42	11.7	42	95	0	863	35	24	19	21	1.96
100418--100684	135	2.0	135	96	1	500	27	20	17	34	1.95
100813--101276	224	2.1	224	88	4	684	28	12	19	40	1.87
103300--103460	88	1.8	88	85	2	225	34	18	13	34	1.89

Tables:   1

The End!