Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000375.1 Hibiscus syriacus cultivar Beakdansim tig00000686_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 54333
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Found at i:2017 original size:21 final size:21
Alignment explanation
Indices: 1966--2019 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
1956 ATTATGACTA
1966 TCGCAATGCGATTTTCCAATT
1 TCGCAATGCGATTTTCCAATT
***
1987 TCGTGTTGCGATTTTCCCAA-T
1 TCGCAATGCGATTTT-CCAATT
2008 TCGCAATGCGAT
1 TCGCAATGCGAT
2020 AAGTAAATCG
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (21 bp):
TCGCAATGCGATTTTCCAATT
Found at i:2032 original size:19 final size:19
Alignment explanation
Indices: 2008--2101 Score: 71
Period size: 21 Copynumber: 4.7 Consensus size: 19
1998 TTTTCCCAAT
*
2008 TCGCAATGCGATAAGTAAA
1 TCGCAATGCGATAAGAAAA
**
2027 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCG-A-TAAGAAAA
* **
2048 TCGCAATGCGATACTGACTA
1 TCGCAATGCGATA-AGAAAA
* *
2068 TCGCAACGCGATAATACAAAA
1 TCGCAATGCGAT-A-AGAAAA
2089 TCGCAATGCGATA
1 TCGCAATGCGATA
2102 CTGACTTGTA
Statistics
Matches: 57, Mismatches: 14, Indels: 7
0.73 0.18 0.09
Matches are distributed among these distances:
19 11 0.19
20 17 0.30
21 29 0.51
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.21
Consensus pattern (19 bp):
TCGCAATGCGATAAGAAAA
Found at i:2072 original size:20 final size:20
Alignment explanation
Indices: 2047--2107 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
2037 AATTTGGAAA
2047 ATCGCAATGCGATACTGACT
1 ATCGCAATGCGATACTGACT
* * *
2067 ATCGCAACGCGATAAT-ACAAA
1 ATCGCAATGCGATACTGAC--T
2088 ATCGCAATGCGATACTGACT
1 ATCGCAATGCGATACTGACT
2108 TGTACTCTGA
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
19 2 0.06
20 14 0.44
21 14 0.44
22 2 0.06
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (20 bp):
ATCGCAATGCGATACTGACT
Found at i:2138 original size:20 final size:20
Alignment explanation
Indices: 2113--2172 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
2103 TGACTTGTAC
*
2113 TCTGACTTTCGCAACGCGAT
1 TCTGACTTTCGCAACGAGAT
2133 TCTGACTTTCGCAACGAGAT
1 TCTGACTTTCGCAACGAGAT
*
2153 TCTGACTATCGCAACGAGAT
1 TCTGACTTTCGCAACGAGAT
2173 AATACAGAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (20 bp):
TCTGACTTTCGCAACGAGAT
Found at i:2757 original size:20 final size:20
Alignment explanation
Indices: 2717--2790 Score: 123
Period size: 20 Copynumber: 3.8 Consensus size: 20
2707 AACGGGGAAT
2717 TCGCAACGCGAAAAT-GCTA
1 TCGCAACGCGAAAATGGCTA
*
2736 TCGCAAAGCGAAAATGGCTA
1 TCGCAACGCGAAAATGGCTA
2756 TCGCAACGCGAAAATGGCTA
1 TCGCAACGCGAAAATGGCTA
*
2776 TCGCAACGAGAAAAT
1 TCGCAACGCGAAAAT
2791 CGCAATGCGA
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
19 14 0.27
20 37 0.73
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGAAAATGGCTA
Found at i:2854 original size:19 final size:19
Alignment explanation
Indices: 2830--2881 Score: 95
Period size: 19 Copynumber: 2.7 Consensus size: 19
2820 TTTCTCGTTA
2830 TTCGCATTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
2849 TTCGCATTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
*
2868 TTTGCATTGCGATT
1 TTCGCATTGCGATT
2882 CTCTCATTGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.15, C:0.19, G:0.17, T:0.48
Consensus pattern (19 bp):
TTCGCATTGCGATTTTCAT
Found at i:4935 original size:19 final size:19
Alignment explanation
Indices: 4905--4982 Score: 94
Period size: 19 Copynumber: 4.4 Consensus size: 19
4895 GGAAATGGCT
*
4905 ATCGCAACGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
4924 ATCACAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
4943 ATCGCAA--CG--A-CAAA
1 ATCGCAATGCGAAATGAAA
4957 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
4976 ATCGCAA
1 ATCGCAA
4983 CGACAAAATC
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
14 10 0.20
15 1 0.02
16 2 0.04
17 2 0.04
18 1 0.02
19 33 0.67
ACGTcount: A:0.49, C:0.21, G:0.18, T:0.13
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:4959 original size:14 final size:14
Alignment explanation
Indices: 4940--4998 Score: 64
Period size: 14 Copynumber: 3.9 Consensus size: 14
4930 ATGCGAAATG
4940 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
4954 AAAATCGCAATGCGAAATG
1 AAAATCGCAA--CG--A-C
4973 AAAATCGCAACGAC
1 AAAATCGCAACGAC
4987 AAAATCGCAACG
1 AAAATCGCAACG
4999 CGAAACACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
14 22 0.58
15 1 0.03
16 2 0.05
17 2 0.05
18 1 0.03
19 10 0.26
ACGTcount: A:0.49, C:0.24, G:0.17, T:0.10
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:4965 original size:33 final size:33
Alignment explanation
Indices: 4921--5003 Score: 148
Period size: 33 Copynumber: 2.5 Consensus size: 33
4911 ACGCGAAATG
*
4921 AAAATCACAATGCGAAATGAAAATCGCAACGAC
1 AAAATCGCAATGCGAAATGAAAATCGCAACGAC
4954 AAAATCGCAATGCGAAATGAAAATCGCAACGAC
1 AAAATCGCAATGCGAAATGAAAATCGCAACGAC
*
4987 AAAATCGCAACGCGAAA
1 AAAATCGCAATGCGAAA
5004 CACAAATCGC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 48 1.00
ACGTcount: A:0.51, C:0.22, G:0.17, T:0.11
Consensus pattern (33 bp):
AAAATCGCAATGCGAAATGAAAATCGCAACGAC
Found at i:5011 original size:33 final size:33
Alignment explanation
Indices: 4921--5014 Score: 127
Period size: 33 Copynumber: 2.8 Consensus size: 33
4911 ACGCGAAATG
* * *
4921 AAAATCACAATGCGAAATGAAAATCGCAACGAC
1 AAAATCGCAACGCGAAATCAAAATCGCAACGAC
* *
4954 AAAATCGCAATGCGAAATGAAAATCGCAACGAC
1 AAAATCGCAACGCGAAATCAAAATCGCAACGAC
4987 AAAATCGCAACGCGAAA-CACAAATCGCA
1 AAAATCGCAACGCGAAATCA-AAATCGCA
5015 TTGCGATTTT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
32 1 0.02
33 56 0.98
ACGTcount: A:0.50, C:0.23, G:0.16, T:0.11
Consensus pattern (33 bp):
AAAATCGCAACGCGAAATCAAAATCGCAACGAC
Found at i:5032 original size:19 final size:19
Alignment explanation
Indices: 5010--5068 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 19
5000 GAAACACAAA
5010 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
* *
5029 TCGCGTTGCGA-TTT--TG
1 TCGCATTGCGATTTTCATT
5045 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
5062 TCGCATT
1 TCGCATT
5069 TCATTTAGCC
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
14 6 0.19
15 3 0.09
16 4 0.12
17 4 0.12
18 3 0.09
19 12 0.38
ACGTcount: A:0.12, C:0.20, G:0.20, T:0.47
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:5645 original size:17 final size:18
Alignment explanation
Indices: 5623--5669 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
5613 CGGGTCGATC
5623 AGGTGATGGCTCT-GGTG
1 AGGTGATGGCTCTGGGTG
*
5640 AGGTGATAGCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
5658 AGGTGATGGCTC
1 AGGTGATGGCTC
5670 CCGAAGTGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 12 0.44
18 15 0.56
ACGTcount: A:0.15, C:0.13, G:0.45, T:0.28
Consensus pattern (18 bp):
AGGTGATGGCTCTGGGTG
Found at i:7326 original size:22 final size:22
Alignment explanation
Indices: 7299--7342 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
7289 GATGGAGATA
7299 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGTCGGAGATGGG
7321 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGTCGGAGATGGG
7343 TGAGAGAGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.14, G:0.45, T:0.23
Consensus pattern (22 bp):
GACGGATTTCGTCGGAGATGGG
Found at i:7594 original size:41 final size:41
Alignment explanation
Indices: 7549--7626 Score: 129
Period size: 41 Copynumber: 1.9 Consensus size: 41
7539 CGAAAGTCAG
*
7549 TATCGCGTTGCGAAAGTCAGTATCACGTTGCGATTTTGTAT
1 TATCGCGTTGCGAAAGTCAGTATCACATTGCGATTTTGTAT
* *
7590 TATCGCGTTGCGATAGTCAGTATCGCATTGCGATTTT
1 TATCGCGTTGCGAAAGTCAGTATCACATTGCGATTTT
7627 CCCAATTCGC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.37
Consensus pattern (41 bp):
TATCGCGTTGCGAAAGTCAGTATCACATTGCGATTTTGTAT
Found at i:7623 original size:20 final size:20
Alignment explanation
Indices: 7529--7623 Score: 102
Period size: 20 Copynumber: 4.7 Consensus size: 20
7519 GATTATGTAT
* *
7529 TATCTCGTTGCGAAAGTCAG
1 TATCGCGTTGCGATAGTCAG
*
7549 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGATAGTCAG
* * *
7569 TATCACGTTGCGATTTTGT-AT
1 TATCGCGTTGCGA--TAGTCAG
7590 TATCGCGTTGCGATAGTCAG
1 TATCGCGTTGCGATAGTCAG
*
7610 TATCGCATTGCGAT
1 TATCGCGTTGCGAT
7624 TTTCCCAATT
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
19 3 0.05
20 45 0.71
21 13 0.21
22 2 0.03
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (20 bp):
TATCGCGTTGCGATAGTCAG
Found at i:7637 original size:41 final size:41
Alignment explanation
Indices: 7549--7644 Score: 122
Period size: 41 Copynumber: 2.3 Consensus size: 41
7539 CGAAAGTCAG
* * ** *
7549 TATCGCGTTGCGAAAGTCAGTATCACGTTGCGATTTTGTAT
1 TATCGCGTTGCGATAGTCAGTATCACATTGCGATTTTCCAA
*
7590 TATCGCGTTGCGATAGTCAGTATCGCATTGCGATTTTCCCAA
1 TATCGCGTTGCGATAGTCAGTATCACATTGCGATTTT-CCAA
7632 T-TCGCGTTGCGAT
1 TATCGCGTTGCGAT
7645 TTACTTATTC
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
41 46 0.96
42 2 0.04
ACGTcount: A:0.20, C:0.21, G:0.24, T:0.35
Consensus pattern (41 bp):
TATCGCGTTGCGATAGTCAGTATCACATTGCGATTTTCCAA
Found at i:7705 original size:21 final size:22
Alignment explanation
Indices: 7653--7705 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
7643 ATTTACTTAT
7653 TCGCATTGCG-AATTGGGAAAA
1 TCGCATTGCGAAATTGGGAAAA
**
7674 TCGCAACGCGAAATT-GGAAAA
1 TCGCATTGCGAAATTGGGAAAA
7695 TCGCATTGCGA
1 TCGCATTGCGA
7706 TAGTGATAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (22 bp):
TCGCATTGCGAAATTGGGAAAA
Found at i:8076 original size:24 final size:23
Alignment explanation
Indices: 8032--8076 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
8022 GATATTCAAT
*
8032 AAATTAAATATGAAAATACTACG
1 AAATTAAATATGAAAAAACTACG
*
8055 AAATTAAATTATTAAAAAACTA
1 AAATTAAA-TATGAAAAAACTA
8077 ATTTAATGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.60, C:0.07, G:0.04, T:0.29
Consensus pattern (23 bp):
AAATTAAATATGAAAAAACTACG
Found at i:8562 original size:50 final size:50
Alignment explanation
Indices: 8492--8590 Score: 180
Period size: 50 Copynumber: 2.0 Consensus size: 50
8482 GCATCAAAAT
* *
8492 ATGAAACATGTTATGGAAGTACTTCATCTCTAGTAGCAACACAAATCAAA
1 ATGAAACATGTTATGAAAGTACTTCATCTCTAGTAGCAAAACAAATCAAA
8542 ATGAAACATGTTATGAAAGTACTTCATCTCTAGTAGCAAAACAAATCAA
1 ATGAAACATGTTATGAAAGTACTTCATCTCTAGTAGCAAAACAAATCAA
8591 TTGTCTAACC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.43, C:0.17, G:0.13, T:0.26
Consensus pattern (50 bp):
ATGAAACATGTTATGAAAGTACTTCATCTCTAGTAGCAAAACAAATCAAA
Found at i:10739 original size:2 final size:2
Alignment explanation
Indices: 10734--10773 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
10724 TATTTTATGG
*
10734 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10774 AAGATATCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:23845 original size:60 final size:60
Alignment explanation
Indices: 23730--23848 Score: 141
Period size: 60 Copynumber: 2.0 Consensus size: 60
23720 ATTTGACACA
* * * * * * *
23730 ATGCCTTCATGTTCTAGGGGGAGGCATTCAACTGCGAGCTTATTCAACTTGAATGTCGAG
1 ATGCCTTCAAGTTCAAGGGGAAGACATTCAACTACCAGCTTATTCAACTTAAATGTCGAG
* *
23790 ATGCCTTCAAGTTCAAGGGGAAGACATTCAACTACCAGCTTGTTCGA-TCTAAATGTCGA
1 ATGCCTTCAAGTTCAAGGGGAAGACATTCAACTACCAGCTTATTCAACT-TAAATGTCGA
23849 CATCGTGGAG
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
59 1 0.02
60 48 0.98
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.29
Consensus pattern (60 bp):
ATGCCTTCAAGTTCAAGGGGAAGACATTCAACTACCAGCTTATTCAACTTAAATGTCGAG
Found at i:29280 original size:55 final size:55
Alignment explanation
Indices: 29196--29505 Score: 410
Period size: 55 Copynumber: 5.6 Consensus size: 55
29186 GCATTTTTTA
**
29196 TGCAAATCCACAAAATTCATCATGAGTTGATGAATCACCGTACAGTCACTTTGTG
1 TGCAAATCCACGGAATTCATCATGAGTTGATGAATCACCGTACAGTCACTTTGTG
* * *
29251 TGCAAATCAATGGAATTCATCATGAGTTGATGAATCACCGTACAGGCACTTTGTG
1 TGCAAATCCACGGAATTCATCATGAGTTGATGAATCACCGTACAGTCACTTTGTG
* ** *
29306 TGTAAATCCACAAAATTCATCATGAGTTGATGAATCACCTTACA-TACACTTTGTG
1 TGCAAATCCACGGAATTCATCATGAGTTGATGAATCACCGTACAGT-CACTTTGTG
* * * *
29361 TGTAAATCCACGAAATTCATCATGAGTTGCTGAATCAACGTACAAG-CACTTTGTG
1 TGCAAATCCACGGAATTCATCATGAGTTGATGAATCACCGTAC-AGTCACTTTGTG
* * *
29416 TGCAAATCCACGGAATTCATCATGAGTTGATGATTCATCATACA-TGCACTTTGTG
1 TGCAAATCCACGGAATTCATCATGAGTTGATGAATCACCGTACAGT-CACTTTGTG
* *
29471 TGCAAAACCACAGAATTCATCATGAGTTGATGAAT
1 TGCAAATCCACGGAATTCATCATGAGTTGATGAAT
29506 TACTGTATAA
Statistics
Matches: 225, Mismatches: 25, Indels: 10
0.87 0.10 0.04
Matches are distributed among these distances:
54 1 0.00
55 223 0.99
56 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (55 bp):
TGCAAATCCACGGAATTCATCATGAGTTGATGAATCACCGTACAGTCACTTTGTG
Found at i:29471 original size:165 final size:165
Alignment explanation
Indices: 29199--29505 Score: 490
Period size: 165 Copynumber: 1.9 Consensus size: 165
29189 TTTTTTATGC
* *
29199 AAATCCACAAAATTCATCATGAGTTGATGAATCACCGTACAGTCACTTTGTGTGCAAATCAATGG
1 AAATCCACAAAATTCATCATGAGTTGATGAATCAACGTACAGTCACTTTGTGTGCAAATCAACGG
* * *
29264 AATTCATCATGAGTTGATGAATCACCGTACAGGCACTTTGTGTGTAAATCCACAAAATTCATCAT
66 AATTCATCATGAGTTGATGAATCACCATACAGGCACTTTGTGTGCAAAACCACAAAATTCATCAT
29329 GAGTTGATGAATCACCTTACATACACTTTGTGTGT
131 GAGTTGATGAATCACCTTACATACACTTTGTGTGT
* * *
29364 AAATCCACGAAATTCATCATGAGTTGCTGAATCAACGTACAAG-CACTTTGTGTGCAAATCCACG
1 AAATCCACAAAATTCATCATGAGTTGATGAATCAACGTAC-AGTCACTTTGTGTGCAAATCAACG
* * * *
29428 GAATTCATCATGAGTTGATGATTCATCATACATGCACTTTGTGTGCAAAACCACAGAATTCATCA
65 GAATTCATCATGAGTTGATGAATCACCATACAGGCACTTTGTGTGCAAAACCACAAAATTCATCA
29493 TGAGTTGATGAAT
130 TGAGTTGATGAAT
29506 TACTGTATAA
Statistics
Matches: 129, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
165 127 0.98
166 2 0.02
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (165 bp):
AAATCCACAAAATTCATCATGAGTTGATGAATCAACGTACAGTCACTTTGTGTGCAAATCAACGG
AATTCATCATGAGTTGATGAATCACCATACAGGCACTTTGTGTGCAAAACCACAAAATTCATCAT
GAGTTGATGAATCACCTTACATACACTTTGTGTGT
Found at i:37968 original size:35 final size:34
Alignment explanation
Indices: 37929--38036 Score: 105
Period size: 35 Copynumber: 3.2 Consensus size: 34
37919 CGAATGAGTC
* *
37929 ACCCACGATTTCAACTTCACAATGAAGGACTTCGT
1 ACCCAAGATTTCAACTTCACAACGAAGGA-TTCGT
* * * *
37964 ACCCAAAGACTT-AATTTCACGACGAAGGAGTC--
1 ACCC-AAGATTTCAACTTCACAACGAAGGATTCGT
*
37996 ACCCATGATTTCAACTTCACAACGAAGGATATCGT
1 ACCCAAGATTTCAACTTCACAACGAAGGAT-TCGT
38031 ACCCAA
1 ACCCAA
38037 AAGATCGACC
Statistics
Matches: 56, Mismatches: 12, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
31 5 0.09
32 19 0.34
33 2 0.04
34 2 0.04
35 23 0.41
36 5 0.09
ACGTcount: A:0.35, C:0.28, G:0.15, T:0.22
Consensus pattern (34 bp):
ACCCAAGATTTCAACTTCACAACGAAGGATTCGT
Found at i:38012 original size:67 final size:68
Alignment explanation
Indices: 37863--38037 Score: 228
Period size: 67 Copynumber: 2.5 Consensus size: 68
37853 TCCAAGTTGA
* * * *
37863 ATTTCAGCTTCACAACGAAGGACATCGTACCCAAAAGTTTCGACTTAATTTCATGACGAATGAGT
1 ATTTCAACTTCACAACGAAGGACTTCGTACCC-AAA---T-GACTTAATTTCACGACGAAGGAGT
37928 CACCCACG
61 CACCCACG
*
37936 ATTTCAACTTCACAATGAAGGACTTCGTACCCAAA-GACTTAATTTCACGACGAAGGAGTCACCC
1 ATTTCAACTTCACAACGAAGGACTTCGTACCCAAATGACTTAATTTCACGACGAAGGAGTCACCC
*
38000 ATG
66 ACG
38003 ATTTCAACTTCACAACGAAGGA-TATCGTACCCAAA
1 ATTTCAACTTCACAACGAAGGACT-TCGTACCCAAA
38038 AGATCGACCC
Statistics
Matches: 94, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
66 1 0.01
67 61 0.65
72 3 0.03
73 29 0.31
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (68 bp):
ATTTCAACTTCACAACGAAGGACTTCGTACCCAAATGACTTAATTTCACGACGAAGGAGTCACCC
ACG
Found at i:38015 original size:32 final size:32
Alignment explanation
Indices: 37918--38024 Score: 99
Period size: 32 Copynumber: 3.2 Consensus size: 32
37908 TAATTTCATG
* *
37918 ACGAATGAGTCACCCACGATTTCAACTTCACA
1 ACGAAGGAGTCACCCAAGATTTCAACTTCACA
* * * * *
37950 ATGAAGGACTTCGTACCCAAAGACTT-AATTTCACG
1 ACGAAGGA-GTC--ACCC-AAGATTTCAACTTCACA
*
37985 ACGAAGGAGTCACCCATGATTTCAACTTCACA
1 ACGAAGGAGTCACCCAAGATTTCAACTTCACA
38017 ACGAAGGA
1 ACGAAGGA
38025 TATCGTACCC
Statistics
Matches: 57, Mismatches: 13, Indels: 10
0.71 0.16 0.12
Matches are distributed among these distances:
31 5 0.09
32 25 0.44
33 2 0.04
34 2 0.04
35 18 0.32
36 5 0.09
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.21
Consensus pattern (32 bp):
ACGAAGGAGTCACCCAAGATTTCAACTTCACA
Found at i:38681 original size:18 final size:18
Alignment explanation
Indices: 38620--38958 Score: 145
Period size: 18 Copynumber: 19.3 Consensus size: 18
38610 TCAACCTTGT
38620 TTATATAGTATATTATTATA
1 TTATATAGTATA-T-TTATA
*
38640 TT-TATA-TAT-TATATA
1 TTATATAGTATATTTATA
38655 TCT-TATAGTATATTTATA
1 T-TATATAGTATATTTATA
* ** *
38673 TTATGTAGTATAAATGTA
1 TTATATAGTATATTTATA
* *
38691 TTATATGACTATATATTTTA
1 TTATAT-AGTATAT-TTATA
* *
38711 TTATGTTGTATAGTTTAT-
1 TTATATAGTATA-TTTATA
*
38729 TTATATTGTATA-TTATA
1 TTATATAGTATATTTATA
38746 -TATATTATGT-TATTATATA
1 TTATA-TA-GTATATT-TATA
38765 TT-T-T-GTATATTTATA
1 TTATATAGTATATTTATA
**
38780 TTATATAGTATATACATA
1 TTATATAGTATATTTATA
*
38798 TTATAT--TATATGT-T-
1 TTATATAGTATATTTATA
*
38812 TTATATA-TAT-TATATA
1 TTATATAGTATATTTATA
* * * *
38828 GTGTGTA-TATATTATGTCA
1 TTATATAGTATATT-TAT-A
38847 TTATATAGTATATTTATA
1 TTATATAGTATATTTATA
*
38865 TTATA-A-TATATATATA
1 TTATATAGTATATTTATA
*
38881 TATATATATTATCA-TTATA
1 T-TATATAGTAT-ATTTATA
38900 TATATATA-TATATTTATA
1 T-TATATAGTATATTTATA
*
38918 TGTAT-TA-TTTATTATATA
1 T-TATATAGTATATT-TATA
38936 TTATTATA-TATTATTT-TA
1 TTA-TATAGTA-TATTTATA
38954 TTATA
1 TTATA
38959 CATATACATA
Statistics
Matches: 250, Mismatches: 36, Indels: 69
0.70 0.10 0.19
Matches are distributed among these distances:
14 8 0.03
15 18 0.07
16 41 0.16
17 27 0.11
18 86 0.34
19 47 0.19
20 23 0.09
ACGTcount: A:0.37, C:0.01, G:0.06, T:0.56
Consensus pattern (18 bp):
TTATATAGTATATTTATA
Found at i:38749 original size:2 final size:2
Alignment explanation
Indices: 38737--38975 Score: 119
Period size: 2 Copynumber: 128.5 Consensus size: 2
38727 ATTTATATTG
* * *
38737 TA TA T- TA TA TA TA T- TA TG T- TA T- TA TA TA T- TT TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * *
38774 TT TA TA T- TA TA TA GTA TA TA CA TA T- TA TA T- TA TA TG T- TT
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
38813 TA TA TA TA T- TA TA TA GTG TG TA TA TA T- TA TG TCA T- TA TA TA
1 TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA T-A TA TA TA TA
*
38854 GTA TA TT TA TA T- TA TA -A TA TA TA TA TA TA TA TA TA T- TA TCA
1 -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A
* * *
38895 T- TA TA TA TA TA TA TA TA TT TA TA TG TA T- TA TT TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
38934 TA T- TA T- TA TA TA T- TA T- TT TA T- TA TA CA TA TA CA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
38971 TA TA T
1 TA TA T
38976 TTATCATTTT
Statistics
Matches: 183, Mismatches: 26, Indels: 56
0.69 0.10 0.21
Matches are distributed among these distances:
1 23 0.13
2 152 0.83
3 8 0.04
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.55
Consensus pattern (2 bp):
TA
Found at i:38825 original size:92 final size:90
Alignment explanation
Indices: 38729--38976 Score: 236
Period size: 83 Copynumber: 2.8 Consensus size: 90
38719 TATAGTTTAT
38729 TTATATTGTATATTATATATATTATGTTATTATATATTTTGTATATTTATATTATATAGTATATA
1 TTATATTGTAT-TTATATATATTATGTTATTATATA-TTTGTATATTTATATTATATA-TATATA
38794 CATATTATATTATATGT-T-TTATATATA
63 CATATTATATTATAT-TATATTATATATA
* * * * *
38821 TTATATAG--TGTGTATATATTATGTCATTATATA---GTATATTTATATTATA-ATATATATAT
1 TTATATTGTATTTATATATATTATGTTATTATATATTTGTATATTTATATTATATATATATACAT
38880 A-TATA-TATATTATCATTATATATA
66 ATTATATTATATTAT-ATTATATATA
* * * *
38904 -TATA-TATATTTATATGTATTAT-TTATTATATATTAT-TATATATTATTTTATTATACATATA
1 TTATATTGTATTTATATATATTATGTTATTATATATT-TGTATAT-TTATATTA-TATATATATA
38965 CATATATATATT
63 CATAT-TATATT
38977 TATCATTTTT
Statistics
Matches: 127, Mismatches: 14, Indels: 31
0.74 0.08 0.18
Matches are distributed among these distances:
80 1 0.01
81 6 0.05
82 17 0.13
83 29 0.23
84 1 0.01
85 21 0.17
86 7 0.06
87 2 0.02
88 9 0.07
89 21 0.17
90 5 0.04
91 1 0.01
92 7 0.06
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (90 bp):
TTATATTGTATTTATATATATTATGTTATTATATATTTGTATATTTATATTATATATATATACAT
ATTATATTATATTATATTATATATA
Found at i:38842 original size:89 final size:85
Alignment explanation
Indices: 38737--38983 Score: 267
Period size: 85 Copynumber: 2.9 Consensus size: 85
38727 ATTTATATTG
38737 TATAT-TATATATATTATGTTATTATATATTTTGTATATTTATATTATATAGTATATACATAT-T
1 TATATGTATATATATTATGTTATTATATA-TTTGTATATTTATATTATATA-TATATACATATAT
*
38800 ATATTAT-ATGTTTTATATATATTA
64 ATATTATCA--TTATATATATA-TA
* * *
38824 TATAGTGTGTATATATTATGTCATTATATA---GTATATTTATATTATAATATATATATATATAT
1 TATA-TGTATATATATTATGTTATTATATATTTGTATATTTATATTAT-ATATATATACATATAT
38886 ATATTATCATTATATATATATA
64 ATATTATCATTATATATATATA
* * * *
38908 TATATTTATATGTATTAT-TTATTATATATTAT-TATATATTATTTTATTATACATATACATATA
1 TATATGTATATATATTATGTTATTATATATT-TGTATAT-TTATATTA-TATATATATACATATA
38971 TATATTTATCATT
63 TATA-TTATCATT
38984 TTTCTTGTTT
Statistics
Matches: 137, Mismatches: 11, Indels: 24
0.80 0.06 0.14
Matches are distributed among these distances:
82 9 0.07
83 11 0.08
84 6 0.04
85 40 0.29
86 35 0.26
87 14 0.10
88 1 0.01
89 21 0.15
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.55
Consensus pattern (85 bp):
TATATGTATATATATTATGTTATTATATATTTGTATATTTATATTATATATATATACATATATAT
ATTATCATTATATATATATA
Found at i:38867 original size:107 final size:105
Alignment explanation
Indices: 38628--38963 Score: 285
Period size: 107 Copynumber: 3.1 Consensus size: 105
38618 GTTTATATAG
* * * * *
38628 TATATTAT-TATATT-TATATATTATATATCTTATAGTATATTTATATTATGTAGTATAAATGTA
1 TATATTATATATATTATGTATATTATATATATT-T-GTATATTTATATTATATAGTATATATATA
* * * *
38691 TTATATGACTATATATTTTATTATGTTGTATAGT-TTATTTATATTG
64 TTATAT---TATATGTTTTATTATATTATATAGTATTA--TATATTA
*
38737 TATATTATATATATTATGT-TATTATATAT-TTTGTATATTTATATTATATAGTATATACATATT
1 TATATTATATATATTATGTATATTATATATATTTGTATATTTATATTATATAGTATATATATATT
*
38800 ATATTATATGTTTTATATATATTATATAGTGTGTATATATTA
66 ATATTATATGTTTTAT-TATATTATATAGTAT-TATATATTA
* * * * *
38842 TGTCATTATATAGTA-TATTTATATTATAATATATATATATATATATATTATCAT--TATATATA
1 TAT-ATTATATA-TATTATGTATATTAT-ATATATTTGTATATTTATATTAT-ATAGTATATATA
* *
38904 TATATATATTTATATGTATTATT-TATTATATATTATTATATATTA
62 TAT-TATA-TTATATGTTTTATTATATTATATAGTATTATATATTA
* *
38949 TTTTATTATACATAT
1 -TATATTATATATAT
38964 ACATATATAT
Statistics
Matches: 192, Mismatches: 20, Indels: 32
0.79 0.08 0.13
Matches are distributed among these distances:
104 11 0.06
105 19 0.10
106 15 0.08
107 57 0.30
108 28 0.15
109 30 0.16
110 30 0.16
111 2 0.01
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.56
Consensus pattern (105 bp):
TATATTATATATATTATGTATATTATATATATTTGTATATTTATATTATATAGTATATATATATT
ATATTATATGTTTTATTATATTATATAGTATTATATATTA
Found at i:38934 original size:57 final size:57
Alignment explanation
Indices: 38621--38973 Score: 150
Period size: 56 Copynumber: 6.3 Consensus size: 57
38611 CAACCTTGTT
* *
38621 TATATAGTATATTATTATATT-TATATATTATATATCT-TATAGTATAT-TTATATTATGTAG
1 TATATA-TATATTA-TATATTAT-TATATTATATATATATATA-TATATATTATATTA--TAT
* * * * * *
38681 TATAAATGTATTATATGACTA-TATATTTTAT-TATGT-TGTATAGT-TTAT-TTATAT
1 TATATATATATTATAT-ATTATTATATTATATATATATATATATA-TATTATATTATAT
* *
38735 TGTATAT-TA-TATATATTATGT-TATTATATAT-T-T-TGTATAT-TTATATTATAT
1 TATATATATATTATATATTAT-TATATTATATATATATATATATATATTATATTATAT
* * * *
38786 AGTATATACATATTATAT-TATATGT-T-TTATATATAT-TATATAGTGTGTATATATTATGT
1 --TATATATATATTATATAT-TAT-TATATTATATATATATATATA-TATAT-TATATTATAT
* * *
38845 CAT-TATATAGTATAT-TTA-TATTATAATATATATATATATATATATTATCATTATAT
1 TATATATATATTATATATTATTA-TATTATATATATATATATATATATTAT-ATTATAT
38901 ATATATATATATT-TATATGTATTAT-TTAT-TATATAT-TATTATATATTAT-TT-TAT
1 -TATATATATATTATATAT-TATTATATTATATATATATATA-TATATATTATATTATAT
* *
38955 TATACATATACATATATAT
1 TATATATATA-TTATATAT
38974 ATTTATCATT
Statistics
Matches: 234, Mismatches: 28, Indels: 67
0.71 0.09 0.20
Matches are distributed among these distances:
50 5 0.02
51 16 0.07
52 13 0.06
53 19 0.08
54 22 0.09
55 26 0.11
56 41 0.18
57 40 0.17
58 25 0.11
59 20 0.09
60 7 0.03
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.55
Consensus pattern (57 bp):
TATATATATATTATATATTATTATATTATATATATATATATATATATTATATTATAT
Found at i:38945 original size:28 final size:25
Alignment explanation
Indices: 38835--38964 Score: 111
Period size: 29 Copynumber: 4.9 Consensus size: 25
38825 ATAGTGTGTA
* *
38835 TATATTATGTCATTATATAGTATATT
1 TATATTATTTTATTATATA-TATATT
** *
38861 TATATTATAATA-TATATATATATA
1 TATATTATTTTATTATATATATATT
38885 TATATTATCATTATATATATATATATATT
1 TATATTAT--TT-TAT-TATATATATATT
38914 TATATGTATTATTTATTATATAT-TATT
1 TATAT-TA-T-TTTATTATATATATATT
*
38941 ATATATTATTTTATTATACATATA
1 -TATATTATTTTATTATATATATA
38965 CATATATATA
Statistics
Matches: 87, Mismatches: 8, Indels: 18
0.77 0.07 0.16
Matches are distributed among these distances:
24 13 0.15
25 17 0.20
26 12 0.14
27 8 0.09
28 12 0.14
29 19 0.22
30 5 0.06
31 1 0.01
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (25 bp):
TATATTATTTTATTATATATATATT
Found at i:38969 original size:25 final size:25
Alignment explanation
Indices: 38920--38977 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
38910 TATTTATATG
* *
38920 TATTA-TTTATTATATATTATTATA
1 TATTATTTTATTATACATTATCATA
38944 TATTATTTTATTATACA-TATACATA
1 TATTATTTTATTATACATTAT-CATA
38969 TATATATTT
1 TAT-TATTT
38978 ATCATTTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 8 0.28
25 16 0.55
26 5 0.17
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (25 bp):
TATTATTTTATTATACATTATCATA
Found at i:38975 original size:57 final size:58
Alignment explanation
Indices: 38737--38984 Score: 157
Period size: 57 Copynumber: 4.3 Consensus size: 58
38727 ATTTATATTG
* * * *
38737 TATATTATATATATTATGTTATTATATATT-TTGTATATTTAT-ATTATATAGTATATACA
1 TATA-TATATTTATTAT-TTATTATATATTATTATATAGTTATAATTATATA-CATATACA
*
38796 TAT-TATA-TTA-TATGTT-TTATATA-TATTATATAGTGTGTATATATTATGT-CAT-T--A
1 TATATATATTTATTAT-TTATTATATATTATTATATA--GT-TATA-ATTATATACATATACA
* * * *
38850 TATAGTATATTTA-TATTATAATATATATATATATATATA-TTATCATTATATATATATATA
1 TATA-TATATTTATTATT-TATTATATAT-TAT-TATATAGTTATAATTATATACATATACA
* * *
38910 TATTTATATGTATTATTTATTATATATTATTATATA-TTAT-TTTATTATACATATACA
1 TATATATATTTATTATTTATTATATATTATTATATAGTTATAATTA-TATACATATACA
*
38967 TATATATATTTATCATTT
1 TATATATATTTATTATTT
38985 TTCTTGTTTT
Statistics
Matches: 151, Mismatches: 18, Indels: 42
0.72 0.09 0.20
Matches are distributed among these distances:
53 1 0.01
54 17 0.11
55 6 0.04
56 18 0.12
57 56 0.37
58 11 0.07
59 25 0.17
60 11 0.07
61 6 0.04
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (58 bp):
TATATATATTTATTATTTATTATATATTATTATATAGTTATAATTATATACATATACA
Found at i:43564 original size:33 final size:33
Alignment explanation
Indices: 43527--43592 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
43517 AGAAGGGCTA
43527 GCTTTTCCATATAACTTGAAGCTTAAAGGAGAG
1 GCTTTTCCATATAACTTGAAGCTTAAAGGAGAG
43560 GCTTTTCCATATAACTTGAAGCTTAAAGGAGAG
1 GCTTTTCCATATAACTTGAAGCTTAAAGGAGAG
43593 TTAAAGGCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.30
Consensus pattern (33 bp):
GCTTTTCCATATAACTTGAAGCTTAAAGGAGAG
Found at i:47010 original size:22 final size:22
Alignment explanation
Indices: 46954--47045 Score: 98
Period size: 22 Copynumber: 4.2 Consensus size: 22
46944 TACCAAAACT
* * *
46954 AATCAGCATTCAAACGATTTCT
1 AATCAGCATTCAGACGAATTCC
46976 AATCAGCATTCAGACGAATTCC
1 AATCAGCATTCAGACGAATTCC
*
46998 AATCAGCATTCAGATC-AAGTCC
1 AATCAGCATTCAGA-CGAATTCC
* * *
47020 AGTCAGCATTCATACTAA-TCC
1 AATCAGCATTCAGACGAATTCC
47041 AATCA
1 AATCA
47046 ATGGTAAAGC
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
21 8 0.13
22 52 0.85
23 1 0.02
ACGTcount: A:0.37, C:0.26, G:0.11, T:0.26
Consensus pattern (22 bp):
AATCAGCATTCAGACGAATTCC
Found at i:49502 original size:7 final size:7
Alignment explanation
Indices: 49475--49592 Score: 62
Period size: 7 Copynumber: 15.4 Consensus size: 7
49465 ACAAAAACAC
49475 AAATAAA
1 AAATAAA
49482 TAAATATCAA
1 -AAATA--AA
49492 AAATAAA
1 AAATAAA
*
49499 AAATAAT
1 AAATAAA
*
49506 AAAT-AC
1 AAATAAA
*
49512 AAA-AAC
1 AAATAAA
49518 AAAT-AA
1 AAATAAA
49524 AAATAGAA
1 AAATA-AA
49532 ACTAATAATA
1 A--AATAA-A
49542 AAATACATA
1 AAATA-A-A
49551 AAATAAA
1 AAATAAA
49558 AACATAAAA
1 AA-AT-AAA
*
49567 TAAAAAAA
1 -AAATAAA
49575 CAAATAAA
1 -AAATAAA
49583 AAATAAA
1 AAATAAA
49590 AAA
1 AAA
49593 AAACAATATA
Statistics
Matches: 91, Mismatches: 6, Indels: 27
0.73 0.05 0.22
Matches are distributed among these distances:
6 14 0.15
7 25 0.27
8 24 0.26
9 18 0.20
10 10 0.11
ACGTcount: A:0.76, C:0.06, G:0.01, T:0.17
Consensus pattern (7 bp):
AAATAAA
Found at i:49564 original size:13 final size:13
Alignment explanation
Indices: 49523--49597 Score: 79
Period size: 13 Copynumber: 5.9 Consensus size: 13
49513 AAAACAAATA
*
49523 AAAATAGAAAC-T
1 AAAATAAAAACAT
49535 AATAATAAAATACAT
1 AA-AATAAAA-ACAT
49550 AAAATAAAAACAT
1 AAAATAAAAACAT
49563 AAAATAAAAA-A-
1 AAAATAAAAACAT
49574 ACAAATAAAAA-AT
1 A-AAATAAAAACAT
49587 AAAA-AAAAACA
1 AAAATAAAAACA
49598 ATATAAGAAT
Statistics
Matches: 56, Mismatches: 1, Indels: 12
0.81 0.01 0.17
Matches are distributed among these distances:
11 6 0.11
12 17 0.30
13 21 0.38
14 9 0.16
15 3 0.05
ACGTcount: A:0.77, C:0.07, G:0.01, T:0.15
Consensus pattern (13 bp):
AAAATAAAAACAT
Found at i:49568 original size:27 final size:24
Alignment explanation
Indices: 49491--49595 Score: 78
Period size: 22 Copynumber: 4.4 Consensus size: 24
49481 ATAAATATCA
* *
49491 AAAAT-AAAAAATAATAAATACA-
1 AAAATAAAAAAAAAATAAAAACAT
* * *
49513 AAAA-CAAATAAAAATAGAAAC-T
1 AAAATAAAAAAAAAATAAAAACAT
49535 AATAATAAAATACATAAAATAAAAACAT
1 AA-AATAAAA-A-A-AAAATAAAAACAT
49563 AAAATAAAAAAACAAATAAAAA-AT
1 AAAATAAAAAAA-AAATAAAAACAT
49587 AAAA-AAAAA
1 AAAATAAAAA
49596 CAATATAAGA
Statistics
Matches: 67, Mismatches: 7, Indels: 17
0.74 0.08 0.19
Matches are distributed among these distances:
22 18 0.27
23 7 0.10
24 10 0.15
25 10 0.15
26 2 0.03
27 17 0.25
28 3 0.04
ACGTcount: A:0.78, C:0.06, G:0.01, T:0.15
Consensus pattern (24 bp):
AAAATAAAAAAAAAATAAAAACAT
Found at i:49579 original size:12 final size:12
Alignment explanation
Indices: 49479--49595 Score: 78
Period size: 13 Copynumber: 9.2 Consensus size: 12
49469 AAACACAAAT
49479 AAATAAATATCAAA
1 AAATAAA-AT-AAA
* *
49493 AATAAAAAATAAT
1 AA-ATAAAATAAA
*
49506 AAATACAAA-AAC
1 AAATA-AAATAAA
*
49518 AAATAAAAATAGA
1 AAAT-AAAATAAA
*
49531 AACTAATAATAAA
1 AAATAA-AATAAA
49544 ATACATAAAATAAA
1 A-A-ATAAAATAAA
49558 AACATAAAATAAA
1 AA-ATAAAATAAA
49571 AAA-ACAAATAAA
1 AAATA-AAATAAA
49583 AAATAAAA-AAA
1 AAATAAAATAAA
49594 AA
1 AA
49596 CAATATAAGA
Statistics
Matches: 85, Mismatches: 9, Indels: 21
0.74 0.08 0.18
Matches are distributed among these distances:
11 6 0.07
12 27 0.32
13 33 0.39
14 12 0.14
15 7 0.08
ACGTcount: A:0.77, C:0.06, G:0.01, T:0.16
Consensus pattern (12 bp):
AAATAAAATAAA
Found at i:49860 original size:6 final size:6
Alignment explanation
Indices: 49849--49968 Score: 50
Period size: 6 Copynumber: 19.5 Consensus size: 6
49839 TATTAAAAAC
* * * * **
49849 AAATAA AAATAA AAACAGA AAATAA GATTGA ACTTATA AAATAGA AAATAA
1 AAATAA AAATAA AAATA-A AAATAA AAATAA AAATA-A AAATA-A AAATAA
** * *
49900 ATTTAA AAAT-A ATATAA AACA-AA AAATAA AAAT-- AAATAA AATAGAA
1 AAATAA AAATAA AAATAA AA-ATAA AAATAA AAATAA AAATAA AA-ATAA
*
49946 AAATAGA AAAAATA AAATAA AAA
1 AAATA-A AAATA-A AAATAA AAA
49969 CATATAACGT
Statistics
Matches: 83, Mismatches: 22, Indels: 18
0.67 0.18 0.15
Matches are distributed among these distances:
4 4 0.05
5 5 0.06
6 43 0.52
7 31 0.37
ACGTcount: A:0.73, C:0.03, G:0.05, T:0.19
Consensus pattern (6 bp):
AAATAA
Found at i:49918 original size:22 final size:22
Alignment explanation
Indices: 49888--49968 Score: 69
Period size: 22 Copynumber: 3.7 Consensus size: 22
49878 GAACTTATAA
* **
49888 AATAGAAAATAAATTTAAAAAT
1 AATATAAAATAAAAATAAAAAT
*
49910 AATATAAAACAAAAAATAAAAAT
1 AATATAAAA-TAAAAATAAAAAT
*
49933 AA-ATAAAATAGAAAAATAGAAA-
1 AATATAAAAT--AAAAATAAAAAT
49955 AA-ATAAAATAAAAA
1 AATATAAAATAAAAA
49969 CATATAACGT
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
20 5 0.10
22 23 0.46
23 22 0.44
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.19
Consensus pattern (22 bp):
AATATAAAATAAAAATAAAAAT
Found at i:49933 original size:23 final size:22
Alignment explanation
Indices: 49903--49968 Score: 89
Period size: 23 Copynumber: 3.0 Consensus size: 22
49893 AAAATAAATT
*
49903 TAAAAATAATATAAAACAAAAAA
1 TAAAAATAA-ATAAAATAAAAAA
49926 TAAAAATAAATAAAATAGAAAAA
1 TAAAAATAAATAAAATA-AAAAA
*
49949 TAGAAA-AAATAAAATAAAAA
1 TAAAAATAAATAAAATAAAAA
49969 CATATAACGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
21 4 0.10
22 17 0.43
23 19 0.47
ACGTcount: A:0.79, C:0.02, G:0.03, T:0.17
Consensus pattern (22 bp):
TAAAAATAAATAAAATAAAAAA
Found at i:49940 original size:17 final size:17
Alignment explanation
Indices: 49886--49966 Score: 53
Period size: 17 Copynumber: 4.8 Consensus size: 17
49876 TTGAACTTAT
*
49886 AAAATAGAAAATAAATTTA
1 AAAATA-AAAATAAA-TAA
* *
49905 AAAAT-AATATAAAACAA
1 AAAATAAAAAT-AAATAA
49922 AAAATAAAAATAAATAA
1 AAAATAAAAATAAATAA
* * *
49939 AATAGAAAAAT--AGAA
1 AAAATAAAAATAAATAA
49954 AAAAT-AAAATAAA
1 AAAATAAAAATAAA
49967 AACATATAAC
Statistics
Matches: 48, Mismatches: 10, Indels: 11
0.70 0.14 0.16
Matches are distributed among these distances:
14 5 0.10
15 6 0.12
16 1 0.02
17 24 0.50
18 7 0.15
19 5 0.10
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.19
Consensus pattern (17 bp):
AAAATAAAAATAAATAA
Found at i:50026 original size:14 final size:14
Alignment explanation
Indices: 49990--50053 Score: 67
Period size: 14 Copynumber: 4.6 Consensus size: 14
49980 TATAGAAAAC
*
49990 AATAAAAAACACAA
1 AATAAAAAACAGAA
*
50004 AACAGAAAAACAGAA
1 AATA-AAAAACAGAA
* *
50019 AATAAAAAATATAA
1 AATAAAAAACAGAA
*
50033 ATTAAAAAA-AGAA
1 AATAAAAAACAGAA
50046 AATAAAAA
1 AATAAAAA
50054 CATATAAAAC
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
13 10 0.24
14 19 0.46
15 12 0.29
ACGTcount: A:0.78, C:0.06, G:0.05, T:0.11
Consensus pattern (14 bp):
AATAAAAAACAGAA
Found at i:50039 original size:27 final size:28
Alignment explanation
Indices: 50009--50061 Score: 90
Period size: 27 Copynumber: 1.9 Consensus size: 28
49999 CACAAAACAG
*
50009 AAAAACAGAAAATAAAAA-ATATAAATT
1 AAAAAAAGAAAATAAAAACATATAAATT
50036 AAAAAAAGAAAATAAAAACATATAAA
1 AAAAAAAGAAAATAAAAACATATAAA
50062 ACAATTAGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.77, C:0.04, G:0.04, T:0.15
Consensus pattern (28 bp):
AAAAAAAGAAAATAAAAACATATAAATT
Found at i:50919 original size:7 final size:6
Alignment explanation
Indices: 50903--51005 Score: 58
Period size: 6 Copynumber: 17.7 Consensus size: 6
50893 AGATACTACT
* * * *
50903 AAAAAC AAAAAC GAAAAG AAATAA- AAAAAC AATAA- TAAAAC ATAAAAC
1 AAAAAC AAAAAC AAAAAC AAA-AAC AAAAAC AAAAAC AAAAAC A-AAAAC
* * *
50951 AAATAAC -AAAAC AAATAC -AAAAC AAAATAT AAAAA- ACAAA- AAAAAC
1 AAA-AAC AAAAAC AAAAAC AAAAAC AAAA-AC AAAAAC AAAAAC AAAAAC
50997 AAAAA- AAAA
1 AAAAAC AAAA
51006 TTTTAATACA
Statistics
Matches: 76, Mismatches: 12, Indels: 19
0.71 0.11 0.18
Matches are distributed among these distances:
5 24 0.32
6 36 0.47
7 16 0.21
ACGTcount: A:0.80, C:0.11, G:0.02, T:0.08
Consensus pattern (6 bp):
AAAAAC
Found at i:50936 original size:11 final size:11
Alignment explanation
Indices: 50922--51005 Score: 56
Period size: 10 Copynumber: 7.9 Consensus size: 11
50912 AACGAAAAGA
50922 AATAAAAAAAC
1 AATAAAAAAAC
*
50933 AATAATAAAAC
1 AATAAAAAAAC
*
50944 -AT-AAAACA-
1 AATAAAAAAAC
*
50952 AATAACAAAAC
1 AATAAAAAAAC
50963 AAATACAAAACAA-
1 -AATA-AAAA-AAC
50976 AATATAAAAAAC
1 AATA-AAAAAAC
50988 -A-AAAAAAAC
1 AATAAAAAAAC
50997 AA-AAAAAAA
1 AATAAAAAAA
51006 TTTTAATACA
Statistics
Matches: 58, Mismatches: 7, Indels: 17
0.71 0.09 0.21
Matches are distributed among these distances:
9 13 0.22
10 15 0.26
11 13 0.22
12 12 0.21
13 3 0.05
14 2 0.03
ACGTcount: A:0.80, C:0.11, G:0.00, T:0.10
Consensus pattern (11 bp):
AATAAAAAAAC
Found at i:50949 original size:19 final size:19
Alignment explanation
Indices: 50927--51034 Score: 59
Period size: 19 Copynumber: 5.9 Consensus size: 19
50917 AAAGAAATAA
*
50927 AAAAACAATAATAAAACAT
1 AAAAACAATAACAAAACAT
50946 -AAAACAAATAACAAAAC--
1 AAAAAC-AATAACAAAACAT
* *
50963 AAATACAA-AACAAAATAT
1 AAAAACAATAACAAAACAT
50981 AAAAAACAA-AA-AAAACA-
1 -AAAAACAATAACAAAACAT
* *** *
50998 AAAAAAAATTTTAATACAT
1 AAAAACAATAACAAAACAT
*
51017 AAAAACAGAAAACAAAAC
1 AAAAACA-ATAACAAAAC
51035 CAAATAAAAA
Statistics
Matches: 65, Mismatches: 15, Indels: 17
0.67 0.15 0.18
Matches are distributed among these distances:
16 14 0.22
17 2 0.03
18 19 0.29
19 25 0.38
20 5 0.08
ACGTcount: A:0.75, C:0.12, G:0.01, T:0.12
Consensus pattern (19 bp):
AAAAACAATAACAAAACAT
Found at i:50950 original size:42 final size:42
Alignment explanation
Indices: 50904--50984 Score: 105
Period size: 42 Copynumber: 1.9 Consensus size: 42
50894 GATACTACTA
*
50904 AAAACAAA-AACGAAAAGAAATA-AAAA-AACAATAATAAAACAT
1 AAAACAAATAAC-AAAACAAATACAAAACAA-AAT-ATAAAACAT
50946 AAAACAAATAACAAAACAAATACAAAACAAAATATAAAA
1 AAAACAAATAACAAAACAAATACAAAACAAAATATAAAA
50985 AACAAAAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
42 23 0.66
43 10 0.29
44 2 0.06
ACGTcount: A:0.77, C:0.11, G:0.02, T:0.10
Consensus pattern (42 bp):
AAAACAAATAACAAAACAAATACAAAACAAAATATAAAACAT
Found at i:50965 original size:5 final size:5
Alignment explanation
Indices: 50955--51004 Score: 52
Period size: 5 Copynumber: 10.4 Consensus size: 5
50945 TAAAACAAAT
* *
50955 AACAA AACAA ATACAA AACAA AATAT AA-AA AACAA AA-AA AACAA AA-AA
1 AACAA AACAA A-ACAA AACAA AACAA AACAA AACAA AACAA AACAA AACAA
51003 AA
1 AA
51005 ATTTTAATAC
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
4 11 0.28
5 23 0.59
6 5 0.13
ACGTcount: A:0.82, C:0.12, G:0.00, T:0.06
Consensus pattern (5 bp):
AACAA
Found at i:50973 original size:23 final size:22
Alignment explanation
Indices: 50946--50999 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 22
50936 AATAAAACAT
*
50946 AAAACAAATA-ACAAAACAAATA
1 AAAACAAATATAAAAAACAAA-A
50968 CAAAACAAAATATAAAAAACAAAA
1 -AAAAC-AAATATAAAAAACAAAA
50992 AAAACAAA
1 AAAACAAA
51000 AAAAAATTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
22 3 0.11
23 10 0.36
24 6 0.21
25 9 0.32
ACGTcount: A:0.80, C:0.13, G:0.00, T:0.07
Consensus pattern (22 bp):
AAAACAAATATAAAAAACAAAA
Found at i:50973 original size:30 final size:29
Alignment explanation
Indices: 50910--51005 Score: 83
Period size: 30 Copynumber: 3.3 Consensus size: 29
50900 ACTAAAAACA
* * * *
50910 AAAACGAAAAGAAATAAAAAAAC-AATAAT
1 AAAACAAAAACAAATAACAAAACAAAT-AC
50939 AAAACATAAAACAAATAACAAAACAAATAC
1 AAAACA-AAAACAAATAACAAAACAAATAC
* *
50969 AAAACAAAATATAAAAAACAAAA-AAA-AC
1 AAAACAAAA-ACAAATAACAAAACAAATAC
50997 AAAA-AAAAA
1 AAAACAAAAA
51006 TTTTAATACA
Statistics
Matches: 58, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
26 1 0.02
27 4 0.07
28 6 0.10
29 11 0.19
30 33 0.57
31 3 0.05
ACGTcount: A:0.79, C:0.10, G:0.02, T:0.08
Consensus pattern (29 bp):
AAAACAAAAACAAATAACAAAACAAATAC
Found at i:50992 original size:8 final size:9
Alignment explanation
Indices: 50955--51004 Score: 55
Period size: 9 Copynumber: 5.2 Consensus size: 9
50945 TAAAACAAAT
50955 AACAAAACAA
1 AACAAAA-AA
50965 ATACAAAACAA
1 A-ACAAAA-AA
* *
50976 AATATAAAA
1 AACAAAAAA
50985 AACAAAAAA
1 AACAAAAAA
50994 AACAAAAAA
1 AACAAAAAA
51003 AA
1 AA
51005 ATTTTAATAC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
9 20 0.57
10 5 0.14
11 10 0.29
ACGTcount: A:0.82, C:0.12, G:0.00, T:0.06
Consensus pattern (9 bp):
AACAAAAAA
Found at i:51726 original size:20 final size:20
Alignment explanation
Indices: 51703--51740 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
51693 ATGAAAGTTT
* *
51703 TTTTTTTTGGATGAACAAGC
1 TTTTTATTGGAAGAACAAGC
51723 TTTTTATTGGAAGAACAA
1 TTTTTATTGGAAGAACAA
51741 ATGAAGAGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (20 bp):
TTTTTATTGGAAGAACAAGC
Found at i:52105 original size:7 final size:7
Alignment explanation
Indices: 52086--52116 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
52076 ACTAATATTG
52086 TACTTTAA
1 TACTTT-A
52094 TACTTTA
1 TACTTTA
52101 TACTTTA
1 TACTTTA
52108 TACTTTA
1 TACTTTA
52115 TA
1 TA
52117 TATATATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 17 0.74
8 6 0.26
ACGTcount: A:0.32, C:0.13, G:0.00, T:0.55
Consensus pattern (7 bp):
TACTTTA
Found at i:52120 original size:2 final size:2
Alignment explanation
Indices: 52113--52151 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
52103 CTTTATACTT
*
52113 TA TA TA TA TA TA TA TA T- TA TA TA TA TA TT TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
52152 CTTTTTTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:52251 original size:8 final size:7
Alignment explanation
Indices: 52188--52294 Score: 54
Period size: 7 Copynumber: 16.0 Consensus size: 7
52178 GTACTCTTAC
52188 TTATATA
1 TTATATA
52195 TTATATA
1 TTATATA
52202 CTTATA-A
1 -TTATATA
*
52209 GTATA-A
1 TTATATA
*
52215 -TGTATA
1 TTATATA
*
52221 CT-TATA
1 TTATATA
52227 TTATATA
1 TTATATA
*
52234 -TGTATA
1 TTATATA
52240 TTATATA
1 TTATATA
52247 CTTATA-A
1 -TTATATA
*
52254 TGTAT-TG
1 T-TATATA
52261 TT-TATA
1 TTATATA
52267 CTTATATA
1 -TTATATA
52275 -TATATA
1 TTATATA
52281 TCT-TATA
1 T-TATATA
52288 TTATATA
1 TTATATA
52295 CAATATGTAT
Statistics
Matches: 79, Mismatches: 7, Indels: 28
0.69 0.06 0.25
Matches are distributed among these distances:
5 4 0.05
6 26 0.33
7 34 0.43
8 15 0.19
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (7 bp):
TTATATA
Found at i:52303 original size:46 final size:46
Alignment explanation
Indices: 52191--52304 Score: 135
Period size: 46 Copynumber: 2.5 Consensus size: 46
52181 CTCTTACTTA
* ** *
52191 TATATTATATACTTATAA-GTATAATGTATACTTATATTATATATG
1 TATATTATATACTAATAATGTATTGTTTATACTTATATTATATATG
* *
52236 TATATTATATACTTATAATGTATTGTTTATACTTATATATATATATCT
1 TATATTATATACTAATAATGTATTGTTTATACTTATAT-TATATAT-G
52284 TATATTATATAC-AAT-ATGTAT
1 TATATTATATACTAATAATGTAT
52305 ATAAGTATAT
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
45 18 0.30
46 22 0.36
47 9 0.15
48 12 0.20
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.51
Consensus pattern (46 bp):
TATATTATATACTAATAATGTATTGTTTATACTTATATTATATATG
Found at i:52419 original size:32 final size:32
Alignment explanation
Indices: 52352--52421 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
52342 ATTTAAAATA
**
52352 TATATACTTATAATGTATGCTTATTACTTATT
1 TATATACTTATAATGTATGAGTATTACTTATT
52384 TATATACTTATAA-GTATAGAGTA-TACTTATAT
1 TATATACTTATAATGTAT-GAGTATTACTTAT-T
52416 TATATA
1 TATATA
52422 TGTATATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 11 0.32
32 23 0.68
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.49
Consensus pattern (32 bp):
TATATACTTATAATGTATGAGTATTACTTATT
Found at i:52426 original size:19 final size:18
Alignment explanation
Indices: 52386--52440 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 18
52376 TACTTATTTA
* *
52386 TATACTTATAAGTATAGAG
1 TATACTTAT-ATTATATAG
52405 TATACTTATATTATATATG
1 TATACTTATATTATATA-G
52424 TATA-TATATATTATATA
1 TATACT-TATATTATATA
52441 AATATAAACT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 7 0.22
19 25 0.78
ACGTcount: A:0.42, C:0.04, G:0.07, T:0.47
Consensus pattern (18 bp):
TATACTTATATTATATAG
Found at i:52429 original size:2 final size:2
Alignment explanation
Indices: 52411--52491 Score: 62
Period size: 2 Copynumber: 42.0 Consensus size: 2
52401 AGAGTATACT
* * *
52411 TA TA T- TA TA TA TG TA TA TA TA TA T- TA TA TA AA TA TA AA CTA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA
* * * *
52452 TA T- TA TA AA TA TA TA AA TA TA AA TA TA TA T- TC TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
52492 AAACTATAAT
Statistics
Matches: 61, Mismatches: 13, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
1 4 0.07
2 56 0.92
3 1 0.02
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.46
Consensus pattern (2 bp):
TA
Found at i:52453 original size:26 final size:26
Alignment explanation
Indices: 52424--52481 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
52414 ATTATATATG
*
52424 TATATATAT-ATTATATAAATATAAA
1 TATATATATAAATATATAAATATAAA
52449 CTATAT-TATAAATATATAAATATAAA
1 -TATATATATAAATATATAAATATAAA
52475 TATATAT
1 TATATAT
52482 TCTATATATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 8 0.28
26 21 0.72
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (26 bp):
TATATATATAAATATATAAATATAAA
Found at i:52480 original size:27 final size:26
Alignment explanation
Indices: 52435--52500 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 26
52425 ATATATATAT
*
52435 TATATAAATATAAACTATATTATAAA
1 TATATAAATATAAAATATATTATAAA
* *
52461 TATATAAATATAAATATATATTCTATA
1 TATATAAATATAAA-ATATATTATAAA
52488 TATA-AAACTATAA
1 TATATAAA-TATAA
52501 TATTATAGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 17 0.49
27 18 0.51
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (26 bp):
TATATAAATATAAAATATATTATAAA
Found at i:52503 original size:32 final size:32
Alignment explanation
Indices: 52418--52478 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
52408 ACTTATATTA
* *
52418 TATATGTATATATATAT-TATATAAATATAAAC
1 TATAT-TATAAATATATAAATATAAATATAAAC
52450 TATATTATAAATATATAAATATAAATATA
1 TATATTATAAATATATAAATATAAATATA
52479 TATTCTATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 10 0.38
32 16 0.62
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (32 bp):
TATATTATAAATATATAAATATAAATATAAAC
Done.